Prupe.3G023000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0020158
Physical Location & Seq
Forward (+)
1698858 .. 1700163
1306 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G023000.1

Sequence Viewer

Length: 834 bp
ATGACCACTCTGAGCACTCTCTTCCATCTCCACACTTCACCTTCAAACCCTACCCTCTCTCACGCCTCTCCTCACCTCCACCTCTCTTGCTCTTTCAAACCCAAAACCCCCAAACCACCATCTCTCTTCTCTTCAACAACACCACCACCTGCAAGAGACAGAGTCATAGACTTTGGAAAACACAAGGGCAAGATGCTAGGAACTCTCCCTTCAAGCTACCTCAGATGGATCTCCAAGAACCTCCGAGCCCGTGACTTTGAAGACTGGGCAAAGCTCGCAGACCAGGTCCTAGACGACGCCGTTTACAAGGACCGGATCGAATGGGAGTTGGCTGAGAACGTTCTGAATGGTAACAGGAGCAGTGCTCTTGGTGCAGGTGGAGTTTCTGAGTTGTTGGAAATGAGTGAGAGGTTTGGTTGGGATAATAATGACAAGATTGGTTGGAGAAAAGTGAATTTTGAGCTTCTGGGTACTTCTAGAGGTGGAAGAATTCCAAGACTGAGTGAAAATGGAGGAGGAGAGAGAGAGGTGGAGAGGATGAGGGAGAGGGAGAAGAAGAAGAAGGTTGAGGTTTTGGGGGAAGGTGGAGAGAGGAGGAGGGAGAGGAGGGGGAGATTGAGAATGAAGAGGGAAGACGGAGGTGGGGTGAGGGAGGAGAGGGAGGAGAAGTTGGGGATTTTGGAAAAGGGTGGGGGTGATATTGGAAATGAAGTTGGATTAGGGAGGAACAAAGAGAATGATGAAGGTTGGATGGTTGAGAATTCAAACAGATTTCCTGGACGTGAAGCTCTGTTGAAGAAGGCATACAGCAGAAGAATGAGAAGATTTTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
QSregVF_b

Protein Analysis

278

Amino Acids

31.5

Weight (kDa)

9.85

Isoelectric Point (pI)

46.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020158)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51080
fragaria_vesca FvH4_6g36940
malus_domestica MD09G1165300.v1.1
prunus_persica Prupe.3G023000_v2.0.a1
pyrus_communis pycom04g06160
rosa_wichuraiana Rw2G038390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 157, 365
Acc36I ACCTGC 2 cut(s) 157, 365
AclI AACGTT 1 cut(s) 339
AclWI GGATC 2 cut(s) 236, 323
AcsI RAATTY 3 cut(s) 454, 489, 760
AcyI GRCGYC 1 cut(s) 297
AfaI GTAC 1 cut(s) 472
AgsI TTSAA 7 cut(s) 45, 97, 135, 213, 260, 765, 796
AjiI CACGTC 1 cut(s) 782
AjnI CCWGG 2 cut(s) 282, 775
AluBI AGCT 4 cut(s) 216, 274, 463, 788
AluI AGCT 4 cut(s) 216, 274, 463, 788
Alw21I GWGCWC 2 cut(s) 17, 367
Alw26I GTCTC 1 cut(s) 150
AlwI GGATC 2 cut(s) 236, 323
ApoI RAATTY 3 cut(s) 454, 489, 760
Asp700I GAANNNNTTC 1 cut(s) 826
AspS9I GGNCC 2 cut(s) 286, 310
AsuHPI GGTGA 4 cut(s) 30, 65, 658, 707
AvaII GGWCC 2 cut(s) 286, 310
BanII GRGCYC 1 cut(s) 250
BarI GAAGNNNNNNTAC 2 cut(s) 788, 820
BbsI GAAGAC 2 cut(s) 267, 639
Bbv12I GWGCWC 2 cut(s) 17, 367
BccI CCATC 4 cut(s) 33, 127, 219, 745
BceAI ACGGC 1 cut(s) 284
BciT130I CCWGG 2 cut(s) 284, 777
BcoDI GTCTC 1 cut(s) 150
BfaI CTAG 3 cut(s) 197, 290, 477
BfuAI ACCTGC 2 cut(s) 157, 365
Bme1390I CCNGG 2 cut(s) 284, 777
Bme18I GGWCC 2 cut(s) 286, 310
BmgBI CACGTC 1 cut(s) 782
BmgT120I GGNCC 2 cut(s) 286, 310
BmrFI CCNGG 2 cut(s) 284, 777
BmrI ACTGGG 1 cut(s) 274
BmsI GCATC 1 cut(s) 183
BmuI ACTGGG 1 cut(s) 274
BpiI GAAGAC 2 cut(s) 267, 639
BplI GAGNNNNNCTC 2 cut(s) 349, 381
BsaHI GRCGYC 1 cut(s) 297
BsaWI WCCGGW 1 cut(s) 312
BsaXI ACNNNNNCTCC 4 cut(s) 630, 653, 660, 683
Bse1I ACTGG 1 cut(s) 269
BseBI CCWGG 2 cut(s) 284, 777
BseGI GGATG 2 cut(s) 543, 756
BseMII CTCAG 4 cut(s) 235, 324, 378, 491
BseNI ACTGG 1 cut(s) 269
BseRI GAGGAG 8 cut(s) 60, 528, 531, 607, 610, 619, 668, 677
BsgI GTGCAG 1 cut(s) 393
BsiHKAI GWGCWC 2 cut(s) 17, 367
BsiSI CCGG 1 cut(s) 313
BsmAI GTCTC 1 cut(s) 150
Bsp1286I GDGCHC 3 cut(s) 17, 250, 367
Bsp143I GATC 2 cut(s) 228, 315
BspCNI CTCAG 4 cut(s) 234, 325, 379, 492
BspMI ACCTGC 2 cut(s) 157, 365
BspPI GGATC 2 cut(s) 236, 323
BsrI ACTGG 1 cut(s) 269
BssMI GATC 2 cut(s) 228, 315
BssNI GRCGYC 1 cut(s) 297
Bst2UI CCWGG 2 cut(s) 284, 777
Bst6I CTCTTC 4 cut(s) 26, 131, 136, 620
BstACI GRCGYC 1 cut(s) 297
BstC8I GCNNGC 1 cut(s) 276
BstDEI CTNAG 5 cut(s) 11, 221, 333, 387, 500
BstF5I GGATG 2 cut(s) 543, 756
BstKTI GATC 2 cut(s) 231, 318
BstMAI GTCTC 1 cut(s) 150
BstMBI GATC 2 cut(s) 228, 315
BstMWI GCNNNNNNNGC 2 cut(s) 275, 371
BstNI CCWGG 2 cut(s) 284, 777
BstSCI CCNGG 2 cut(s) 282, 775
BstV2I GAAGAC 2 cut(s) 267, 639
BstX2I RGATCY 1 cut(s) 228
BstYI RGATCY 1 cut(s) 228
BtrI CACGTC 1 cut(s) 782
BtsCI GGATG 2 cut(s) 543, 756
BtsI GCAGTG 1 cut(s) 367
BtsIMutI CAGTG 1 cut(s) 367
BveI ACCTGC 2 cut(s) 157, 365
Cac8I GCNNGC 1 cut(s) 276
Cfr13I GGNCC 2 cut(s) 286, 310
CseI GACGC 1 cut(s) 305
CsiI ACCWGGT 1 cut(s) 282
Csp6I GTAC 1 cut(s) 471
CspCI CAANNNNNGTGG 2 cut(s) 68, 103
CviJI RGCY 6 cut(s) 216, 248, 274, 332, 463, 788
CviKI_1 RGCY 6 cut(s) 216, 248, 274, 332, 463, 788
CviQI GTAC 1 cut(s) 471
DdeI CTNAG 5 cut(s) 11, 221, 333, 387, 500
DpnI GATC 2 cut(s) 230, 317
DpnII GATC 2 cut(s) 228, 315
Eam1104I CTCTTC 4 cut(s) 26, 131, 136, 620
EarI CTCTTC 4 cut(s) 26, 131, 136, 620
Eco24I GRGCYC 1 cut(s) 250
Eco47I GGWCC 2 cut(s) 286, 310
EcoO109I RGGNCCY 1 cut(s) 286
EcoRI GAATTC 2 cut(s) 489, 760
EcoRII CCWGG 2 cut(s) 282, 775
EcoT38I GRGCYC 1 cut(s) 250
FaiI YATR 2 cut(s) 167, 805
FokI GGATG 2 cut(s) 550, 763
FriOI GRGCYC 1 cut(s) 250
FspBI CTAG 3 cut(s) 197, 290, 477
HapII CCGG 1 cut(s) 313
HgaI GACGC 1 cut(s) 305
Hin1I GRCGYC 1 cut(s) 297
HinfI GANTC 1 cut(s) 162
HpaII CCGG 1 cut(s) 313
HphI GGTGA 4 cut(s) 30, 65, 658, 707
Hpy166II GTNNAC 1 cut(s) 304
Hpy188I TCNGA 5 cut(s) 12, 224, 245, 345, 388
Hpy188III TCNNGA 1 cut(s) 477
Hpy8I GTNNAC 1 cut(s) 304
Hpy99I CGWCG 1 cut(s) 299
HpyAV CCTTC 6 cut(s) 51, 219, 556, 575, 737, 793
HpyCH4IV ACGT 2 cut(s) 339, 781
HpyCH4V TGCA 2 cut(s) 152, 374
HpyF10VI GCNNNNNNNGC 2 cut(s) 275, 371
HpyF3I CTNAG 5 cut(s) 11, 221, 333, 387, 500
HpySE526I ACGT 2 cut(s) 339, 781
Hsp92I GRCGYC 1 cut(s) 297
Kzo9I GATC 2 cut(s) 228, 315
LmnI GCTCC 1 cut(s) 357
LweI GCATC 1 cut(s) 183
MabI ACCWGGT 1 cut(s) 282
MaeI CTAG 3 cut(s) 197, 290, 477
MaeII ACGT 2 cut(s) 339, 781
MaeIII GTNAC 2 cut(s) 251, 350
MalI GATC 2 cut(s) 230, 317
MboI GATC 2 cut(s) 228, 315
MflI RGATCY 1 cut(s) 228
MhlI GDGCHC 3 cut(s) 17, 250, 367
MluCI AATT 3 cut(s) 454, 489, 760
MlyI GAGTC 1 cut(s) 171
MmeI TCCRAC 4 cut(s) 375, 422, 694, 728
MroXI GAANNNNTTC 1 cut(s) 826
MspI CCGG 1 cut(s) 313
MspR9I CCNGG 2 cut(s) 284, 777
MvaI CCWGG 2 cut(s) 284, 777
MwoI GCNNNNNNNGC 2 cut(s) 275, 371
NdeII GATC 2 cut(s) 228, 315
NmuCI GTSAC 1 cut(s) 251
PaqCI CACCTGC 2 cut(s) 157, 365
PdmI GAANNNNTTC 1 cut(s) 826
PflFI GACNNNGTC 2 cut(s) 161, 284
PfoI TCCNGGA 1 cut(s) 775
PleI GAGTC 1 cut(s) 170
PpsI GAGTC 1 cut(s) 170
PpuMI RGGWCCY 1 cut(s) 286
Psp1406I AACGTT 1 cut(s) 339
Psp5II RGGWCCY 1 cut(s) 286
Psp6I CCWGG 2 cut(s) 282, 775
PspGI CCWGG 2 cut(s) 282, 775
PspPI GGNCC 2 cut(s) 286, 310
PspPPI RGGWCCY 1 cut(s) 286
PsuI RGATCY 1 cut(s) 228
PsyI GACNNNGTC 2 cut(s) 161, 284
RsaI GTAC 1 cut(s) 472
RsaNI GTAC 1 cut(s) 471
Sau3AI GATC 2 cut(s) 228, 315
Sau96I GGNCC 2 cut(s) 286, 310
SchI GAGTC 1 cut(s) 171
ScrFI CCNGG 2 cut(s) 284, 777
SduI GDGCHC 3 cut(s) 17, 250, 367
SexAI ACCWGGT 1 cut(s) 282
SfaNI GCATC 1 cut(s) 183
SinI GGWCC 2 cut(s) 286, 310
Sse9I AATT 3 cut(s) 454, 489, 760
SspMI CTAG 3 cut(s) 197, 290, 477
StyD4I CCNGG 2 cut(s) 282, 775
TaiI ACGT 2 cut(s) 342, 784
TaqI TCGA 1 cut(s) 318
TasI AATT 3 cut(s) 454, 489, 760
TscAI CASTG 1 cut(s) 367
TseFI GTSAC 1 cut(s) 251
Tsp45I GTSAC 1 cut(s) 251
TspDTI ATGAA 3 cut(s) 638, 723, 756
TspGWI ACGGA 1 cut(s) 651
TspRI CASTG 1 cut(s) 367
Tth111I GACNNNGTC 2 cut(s) 161, 284
VpaK11BI GGWCC 2 cut(s) 286, 310
XapI RAATTY 3 cut(s) 454, 489, 760
XbaI TCTAGA 1 cut(s) 476
XmnI GAANNNNTTC 1 cut(s) 826
XspI CTAG 3 cut(s) 197, 290, 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.