Rw2G038390

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0020158
Physical Location & Seq
Reverse (-)
63333153 .. 63333937
785 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G038390.1

Sequence Viewer

Length: 723 bp
ATGACTACCCACAGCACTCTCTTCCACTTCCACCACACTTCACCTTCAAACCCAGTCTCCTCCTCCACCACCAGTCCACACCTTCACCTCTCCTGCTCCTTCAAACCCAAACCCCCCAAACCCTCCTCCTTCTCCTTCGCTCCCACACCAATACCCGCACGAGACAGAGTCATAGACTTCGGCAAACACAAGGGAAAAATGCTTGGCACACTCCCTTCCACCTACCTCAAATGGGTCTCCACCAACCTCCGCGCCCGCGACTTCGAGCACTGGGCCAAGCTCGCCGACCAGGTCCTAAGCGACGCCGTTTACCGCGACCGCATCGAGTGGGAGTCCGCCGAGAACGCGCTCAGCGGTAACAGAAGCAACGCCGGCGGAGTTTCGGAGCTTCTGGGGATCAGCGACAGGTTCGGGTGGGACAACGATGACAAAGTTGGCTGGAGTAAAGTGAACTTCGAGCTTTTGGGTACTTCGAAAGGTGGGAGAATTCCGAGGAGGAAGAGTGAGACTGAAGTTGCAGAACAGAGGTTTAGGGGAGAAGAGGAGGGAAAGGAGGGAGAGGAGGATGAGGATGCAGAGAGTGGAACGTGGGGTTGGGAAGGAGGAGAAGGTTGGGGGTACAAGGAGAATGGTAATGAAGATAATTGGATGGTGGATAATTCGAAAAAGTTTCCTGGACGCGAGTCTTTGTTGAGGAAAGCTTATAGCAGAAGGTTTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
QSregVF_b

Protein Analysis

240

Amino Acids

27.08

Weight (kDa)

6.47

Isoelectric Point (pI)

33.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020158)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51080
fragaria_vesca FvH4_6g36940
malus_domestica MD09G1165300.v1.1
prunus_persica Prupe.3G023000_v2.0.a1
pyrus_communis pycom04g06160
rosa_wichuraiana Rw2G038390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 5 cut(s) 252, 258, 315, 347, 681
AciI CCGC 8 cut(s) 156, 250, 256, 313, 319, 336, 354, 375
AclWI GGATC 1 cut(s) 404
AcsI RAATTY 1 cut(s) 486
AcuI CTGAAG 1 cut(s) 531
AcyI GRCGYC 1 cut(s) 303
AfaI GTAC 2 cut(s) 469, 620
AfiI CCNNNNNNNGG 1 cut(s) 232
AgsI TTSAA 2 cut(s) 48, 103
AjnI CCWGG 2 cut(s) 288, 673
AjuI GAANNNNNNNTTGG 2 cut(s) 577, 609
AluBI AGCT 4 cut(s) 280, 388, 460, 701
AluI AGCT 4 cut(s) 280, 388, 460, 701
Alw21I GWGCWC 1 cut(s) 270
Alw26I GTCTC 4 cut(s) 61, 156, 241, 500
AlwI GGATC 1 cut(s) 404
AoxI GGCC 1 cut(s) 273
ApoI RAATTY 1 cut(s) 486
AspLEI GCGC 2 cut(s) 254, 349
AspS9I GGNCC 2 cut(s) 273, 292
AsuHPI GGTGA 2 cut(s) 33, 77
AsuII TTCGAA 2 cut(s) 473, 662
AvaII GGWCC 1 cut(s) 292
BauI CACGAG 1 cut(s) 159
Bbv12I GWGCWC 1 cut(s) 270
BccI CCATC 1 cut(s) 643
BceAI ACGGC 1 cut(s) 290
BciT130I CCWGG 2 cut(s) 290, 675
BcoDI GTCTC 4 cut(s) 61, 156, 241, 500
BlpI GCTNAGC 1 cut(s) 350
Bme1390I CCNGG 2 cut(s) 290, 675
Bme18I GGWCC 1 cut(s) 292
BmgT120I GGNCC 2 cut(s) 273, 292
BmrFI CCNGG 2 cut(s) 290, 675
BmrI ACTGGG 2 cut(s) 47, 280
BmsI GCATC 2 cut(s) 330, 562
BmuI ACTGGG 2 cut(s) 47, 280
BoxI GACNNNNGTC 1 cut(s) 682
BpmI CTGGAG 1 cut(s) 460
Bpu10I CCTNAGC 1 cut(s) 296
Bpu1102I GCTNAGC 1 cut(s) 350
Bpu14I TTCGAA 2 cut(s) 473, 662
BsaHI GRCGYC 1 cut(s) 303
BsaI GGTCTC 1 cut(s) 241
BsaJI CCNNGG 1 cut(s) 491
BsaXI ACNNNNNCTCC 4 cut(s) 41, 71, 487, 517
Bsc4I CCNNNNNNNGG 1 cut(s) 232
Bse118I RCCGGY 1 cut(s) 371
Bse1I ACTGG 3 cut(s) 53, 72, 275
BseBI CCWGG 2 cut(s) 290, 675
BseDI CCNNGG 1 cut(s) 491
BseGI GGATG 3 cut(s) 571, 577, 654
BseLI CCNNNNNNNGG 1 cut(s) 232
BseMII CTCAG 1 cut(s) 364
BseNI ACTGG 3 cut(s) 53, 72, 275
BseRI GAGGAG 7 cut(s) 49, 52, 115, 508, 557, 575, 618
Bsh1236I CGCG 5 cut(s) 252, 258, 315, 347, 681
Bsh1285I CGRYCG 1 cut(s) 319
BshFI GGCC 1 cut(s) 275
BsiEI CGRYCG 1 cut(s) 319
BsiHKAI GWGCWC 1 cut(s) 270
BsiSI CCGG 1 cut(s) 372
BslFI GGGAC 1 cut(s) 431
BslI CCNNNNNNNGG 1 cut(s) 232
BsmAI GTCTC 4 cut(s) 61, 156, 241, 500
BsmFI GGGAC 1 cut(s) 431
BsnI GGCC 1 cut(s) 275
Bso31I GGTCTC 1 cut(s) 241
Bsp119I TTCGAA 2 cut(s) 473, 662
Bsp1286I GDGCHC 1 cut(s) 270
Bsp143I GATC 1 cut(s) 396
Bsp1720I GCTNAGC 1 cut(s) 350
BspACI CCGC 8 cut(s) 156, 250, 256, 313, 319, 336, 354, 375
BspANI GGCC 1 cut(s) 275
BspCNI CTCAG 1 cut(s) 363
BspFNI CGCG 5 cut(s) 252, 258, 315, 347, 681
BspPI GGATC 1 cut(s) 404
BspT104I TTCGAA 2 cut(s) 473, 662
BspTNI GGTCTC 1 cut(s) 241
BsrFI RCCGGY 1 cut(s) 371
BsrI ACTGG 3 cut(s) 53, 72, 275
BssAI RCCGGY 1 cut(s) 371
BssECI CCNNGG 1 cut(s) 491
BssMI GATC 1 cut(s) 396
BssNI GRCGYC 1 cut(s) 303
BssSI CACGAG 1 cut(s) 159
Bst2BI CACGAG 1 cut(s) 159
Bst2UI CCWGG 2 cut(s) 290, 675
Bst6I CTCTTC 3 cut(s) 26, 494, 534
BstACI GRCGYC 1 cut(s) 303
BstBI TTCGAA 2 cut(s) 473, 662
BstC8I GCNNGC 3 cut(s) 256, 282, 373
BstDEI CTNAG 2 cut(s) 296, 350
BstF5I GGATG 3 cut(s) 571, 577, 654
BstFNI CGCG 5 cut(s) 252, 258, 315, 347, 681
BstHHI GCGC 2 cut(s) 254, 349
BstKTI GATC 1 cut(s) 399
BstMAI GTCTC 4 cut(s) 61, 156, 241, 500
BstMBI GATC 1 cut(s) 396
BstMCI CGRYCG 1 cut(s) 319
BstMWI GCNNNNNNNGC 3 cut(s) 281, 344, 372
BstNI CCWGG 2 cut(s) 290, 675
BstPAI GACNNNNGTC 1 cut(s) 682
BstSCI CCNGG 2 cut(s) 288, 673
BstUI CGCG 5 cut(s) 252, 258, 315, 347, 681
BsuRI GGCC 1 cut(s) 275
BtsCI GGATG 3 cut(s) 571, 577, 654
BtsIMutI CAGTG 1 cut(s) 268
Cac8I GCNNGC 3 cut(s) 256, 282, 373
CfoI GCGC 2 cut(s) 254, 349
Cfr10I RCCGGY 1 cut(s) 371
Cfr13I GGNCC 2 cut(s) 273, 292
CseI GACGC 2 cut(s) 311, 687
CsiI ACCWGGT 1 cut(s) 288
Csp6I GTAC 2 cut(s) 468, 619
CviJI RGCY 6 cut(s) 275, 280, 388, 438, 460, 701
CviKI_1 RGCY 6 cut(s) 275, 280, 388, 438, 460, 701
CviQI GTAC 2 cut(s) 468, 619
DdeI CTNAG 2 cut(s) 296, 350
DpnI GATC 1 cut(s) 398
DpnII GATC 1 cut(s) 396
Eam1104I CTCTTC 3 cut(s) 26, 494, 534
EarI CTCTTC 3 cut(s) 26, 494, 534
EciI GGCGGA 2 cut(s) 325, 390
Eco31I GGTCTC 1 cut(s) 241
Eco47I GGWCC 1 cut(s) 292
Eco57I CTGAAG 1 cut(s) 531
EcoO109I RGGNCCY 1 cut(s) 292
EcoRI GAATTC 1 cut(s) 486
EcoRII CCWGG 2 cut(s) 288, 673
FaiI YATR 2 cut(s) 173, 705
FaqI GGGAC 1 cut(s) 431
FauI CCCGC 2 cut(s) 163, 263
FokI GGATG 3 cut(s) 578, 584, 661
GlaI GCGC 2 cut(s) 253, 348
GsuI CTGGAG 1 cut(s) 460
HaeIII GGCC 1 cut(s) 275
HapII CCGG 1 cut(s) 372
HgaI GACGC 2 cut(s) 311, 687
HhaI GCGC 2 cut(s) 254, 349
Hin1I GRCGYC 1 cut(s) 303
Hin6I GCGC 2 cut(s) 252, 347
HinP1I GCGC 2 cut(s) 252, 347
HindIII AAGCTT 1 cut(s) 699
HinfI GANTC 3 cut(s) 168, 332, 683
HpaII CCGG 1 cut(s) 372
HphI GGTGA 2 cut(s) 33, 77
Hpy166II GTNNAC 3 cut(s) 77, 310, 451
Hpy188I TCNGA 2 cut(s) 385, 492
Hpy8I GTNNAC 3 cut(s) 77, 310, 451
Hpy99I CGWCG 1 cut(s) 305
HpyAV CCTTC 9 cut(s) 54, 92, 109, 139, 145, 225, 593, 602, 705
HpyCH4IV ACGT 1 cut(s) 587
HpyCH4V TGCA 2 cut(s) 518, 575
HpyF10VI GCNNNNNNNGC 3 cut(s) 281, 344, 372
HpyF3I CTNAG 2 cut(s) 296, 350
HpySE526I ACGT 1 cut(s) 587
Hsp92I GRCGYC 1 cut(s) 303
HspAI GCGC 2 cut(s) 252, 347
KroI GCCGGC 1 cut(s) 371
KroNI GCCGGC 1 cut(s) 373
Kzo9I GATC 1 cut(s) 396
LmnI GCTCC 3 cut(s) 101, 145, 385
LweI GCATC 2 cut(s) 330, 562
MabI ACCWGGT 1 cut(s) 288
MaeII ACGT 1 cut(s) 587
MaeIII GTNAC 1 cut(s) 356
MalI GATC 1 cut(s) 398
MboI GATC 1 cut(s) 396
MboII GAAGA 4 cut(s) 13, 511, 551, 650
MhlI GDGCHC 1 cut(s) 270
MluCI AATT 3 cut(s) 486, 643, 658
MlyI GAGTC 3 cut(s) 177, 341, 692
MreI CGCCGGCG 1 cut(s) 371
MroNI GCCGGC 1 cut(s) 371
MspA1I CMGCKG 1 cut(s) 354
MspI CCGG 1 cut(s) 372
MspR9I CCNGG 2 cut(s) 290, 675
MvaI CCWGG 2 cut(s) 290, 675
MvnI CGCG 5 cut(s) 252, 258, 315, 347, 681
MwoI GCNNNNNNNGC 3 cut(s) 281, 344, 372
NaeI GCCGGC 1 cut(s) 373
NdeII GATC 1 cut(s) 396
NgoMIV GCCGGC 1 cut(s) 371
NmeAIII GCCGAG 1 cut(s) 364
NspV TTCGAA 2 cut(s) 473, 662
PdiI GCCGGC 1 cut(s) 373
PflFI GACNNNGTC 2 cut(s) 167, 290
PfoI TCCNGGA 1 cut(s) 673
PleI GAGTC 3 cut(s) 176, 340, 691
PpsI GAGTC 3 cut(s) 176, 340, 691
PpuMI RGGWCCY 1 cut(s) 292
PshAI GACNNNNGTC 1 cut(s) 682
Psp5II RGGWCCY 1 cut(s) 292
Psp6I CCWGG 2 cut(s) 288, 673
PspGI CCWGG 2 cut(s) 288, 673
PspPI GGNCC 2 cut(s) 273, 292
PspPPI RGGWCCY 1 cut(s) 292
PsyI GACNNNGTC 2 cut(s) 167, 290
RsaI GTAC 2 cut(s) 469, 620
RsaNI GTAC 2 cut(s) 468, 619
Sau3AI GATC 1 cut(s) 396
Sau96I GGNCC 2 cut(s) 273, 292
SchI GAGTC 3 cut(s) 177, 341, 692
ScrFI CCNGG 2 cut(s) 290, 675
SduI GDGCHC 1 cut(s) 270
SexAI ACCWGGT 1 cut(s) 288
SfaNI GCATC 2 cut(s) 330, 562
SfuI TTCGAA 2 cut(s) 473, 662
SgrAI CRCCGGYG 1 cut(s) 371
SinI GGWCC 1 cut(s) 292
Sse9I AATT 3 cut(s) 486, 643, 658
SsiI CCGC 8 cut(s) 156, 250, 256, 313, 319, 336, 354, 375
StyD4I CCNGG 2 cut(s) 288, 673
TaiI ACGT 1 cut(s) 590
TaqI TCGA 5 cut(s) 264, 324, 456, 473, 662
TasI AATT 3 cut(s) 486, 643, 658
TscAI CASTG 1 cut(s) 275
TspDTI ATGAA 1 cut(s) 651
TspRI CASTG 1 cut(s) 275
Tth111I GACNNNGTC 2 cut(s) 167, 290
VpaK11BI GGWCC 1 cut(s) 292
XapI RAATTY 1 cut(s) 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.