FvH4_6g36940

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0020158
Physical Location & Seq
Reverse (-)
28992887 .. 28993732
846 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g36940.t1

Sequence Viewer

Length: 774 bp
ATGACTACCCACAGCACTCTCTTCCACTTCCACACTTCACCTTCGAACCCCTTCTCCTCCTCCTCCTCCTCATCCTCCACCACCAACACACCACACCTCCACCTCTCCTGCTCCTTCAAACCCAAACCCCCAAAACCCTCCTCCTCCTCCTCATTCTCCTTCACCCCCACACCAATCCCCGCACGAGACAGAGTCATAGACTTCGGCAAACACAAGGGCAAAATGCTCGGGACGCTCCCCTCCACCTACCTCAAATGGGTCTCCACCAACCTCCGCGCCCGCGACTTCGAGCACTGGGCCCACCTCGCCGACCAGGTCCTAAACGACGCCGTTTACCGCGACCGCATCGAGTGGGAGTCCGCTGAGAACGCCCTCAGCGGTAACAGAAGCAACGCCGGCGGAGTCTCGGAGCTTCTTGCGATCAGCGACAGGTTCGGGTGGGACAACGACGACAAAGTTGGCTGGAGTAAAGTGAACTTCGAGCTCTTGGGGACTTCGAAAGGTGGGAGGATTCCGAGGAGGAGGAATGAGAGTGTGAGTGAAGCTGGAGAAGAGAGTGAGAGAGAGAAGAAGAAGAAGGGTAGTGAGGGCTTAGGGGAGAAGAGAAGGGAGAGGAGAGAGAGGAGGGTGAGGATGCAGAGAGAGGAAGGTGGTGTTGGGAAGGAGGAGGAGGAGAAGAACGGTGATGAGGATAATTGGGTGGTGGATAATTCGAAAAAGTTTCCTGGACGCGAGTCTTTGTTGAGGAAAGCTTATAGTAGAAGGTTTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
QSregVF_b

Protein Analysis

258

Amino Acids

29.13

Weight (kDa)

9.56

Isoelectric Point (pI)

47.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020158)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51080
fragaria_vesca FvH4_6g36940
malus_domestica MD09G1165300.v1.1
prunus_persica Prupe.3G023000_v2.0.a1
pyrus_communis pycom04g06160
rosa_wichuraiana Rw2G038390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 276, 282, 339, 732
AciI CCGC 8 cut(s) 180, 274, 280, 337, 343, 360, 378, 399
AcyI GRCGYC 1 cut(s) 327
AfiI CCNNNNNNNGG 1 cut(s) 256
AgsI TTSAA 1 cut(s) 118
AjnI CCWGG 2 cut(s) 312, 724
AjuI GAANNNNNNNTTGG 2 cut(s) 639, 671
AloI GAACNNNNNNTCC 2 cut(s) 38, 70
AluBI AGCT 4 cut(s) 412, 484, 545, 752
AluI AGCT 4 cut(s) 412, 484, 545, 752
Alw21I GWGCWC 2 cut(s) 294, 486
Alw26I GTCTC 3 cut(s) 180, 265, 409
Ama87I CYCGRG 1 cut(s) 227
AoxI GGCC 1 cut(s) 297
ApaI GGGCCC 1 cut(s) 301
Asp700I GAANNNNTTC 1 cut(s) 50
AspLEI GCGC 1 cut(s) 278
AspS9I GGNCC 3 cut(s) 297, 298, 316
AsuHPI GGTGA 4 cut(s) 30, 154, 640, 695
AsuII TTCGAA 3 cut(s) 44, 497, 713
AvaI CYCGRG 1 cut(s) 227
AvaII GGWCC 1 cut(s) 316
BaeGI GKGCMC 1 cut(s) 301
BanII GRGCYC 2 cut(s) 301, 486
BauI CACGAG 1 cut(s) 183
Bbv12I GWGCWC 2 cut(s) 294, 486
BbvCI CCTCAGC 1 cut(s) 374
BceAI ACGGC 1 cut(s) 314
BcgI CGANNNNNNTGC 2 cut(s) 208, 242
BciT130I CCWGG 2 cut(s) 314, 726
BcoDI GTCTC 3 cut(s) 180, 265, 409
Bme1390I CCNGG 2 cut(s) 314, 726
Bme18I GGWCC 1 cut(s) 316
BmeT110I CYCGRG 1 cut(s) 227
BmgT120I GGNCC 3 cut(s) 297, 298, 316
BmiI GGNNCC 1 cut(s) 299
BmrFI CCNGG 2 cut(s) 314, 726
BmrI ACTGGG 1 cut(s) 304
BmsI GCATC 2 cut(s) 354, 624
BmuI ACTGGG 1 cut(s) 304
BoxI GACNNNNGTC 1 cut(s) 733
BpmI CTGGAG 2 cut(s) 484, 567
Bpu10I CCTNAGC 2 cut(s) 374, 592
Bpu14I TTCGAA 3 cut(s) 44, 497, 713
BsaHI GRCGYC 1 cut(s) 327
BsaI GGTCTC 1 cut(s) 265
BsaJI CCNNGG 1 cut(s) 515
BsaXI ACNNNNNCTCC 4 cut(s) 38, 68, 81, 111
Bsc4I CCNNNNNNNGG 1 cut(s) 256
Bse118I RCCGGY 1 cut(s) 395
Bse1I ACTGG 1 cut(s) 299
BseBI CCWGG 2 cut(s) 314, 726
BseDI CCNNGG 1 cut(s) 515
BseGI GGATG 2 cut(s) 71, 639
BseLI CCNNNNNNNGG 1 cut(s) 256
BseMII CTCAG 2 cut(s) 354, 388
BseNI ACTGG 1 cut(s) 299
BseSI GKGCMC 1 cut(s) 301
Bsh1236I CGCG 4 cut(s) 276, 282, 339, 732
Bsh1285I CGRYCG 1 cut(s) 343
BshFI GGCC 1 cut(s) 299
BsiEI CGRYCG 1 cut(s) 343
BsiHKAI GWGCWC 2 cut(s) 294, 486
BsiHKCI CYCGRG 1 cut(s) 227
BsiSI CCGG 1 cut(s) 396
BslFI GGGAC 3 cut(s) 244, 455, 505
BslI CCNNNNNNNGG 1 cut(s) 256
BsmAI GTCTC 3 cut(s) 180, 265, 409
BsmFI GGGAC 3 cut(s) 244, 455, 505
BsnI GGCC 1 cut(s) 299
Bso31I GGTCTC 1 cut(s) 265
BsoBI CYCGRG 1 cut(s) 227
Bsp119I TTCGAA 3 cut(s) 44, 497, 713
Bsp120I GGGCCC 1 cut(s) 297
Bsp1286I GDGCHC 3 cut(s) 294, 301, 486
Bsp143I GATC 1 cut(s) 420
BspACI CCGC 8 cut(s) 180, 274, 280, 337, 343, 360, 378, 399
BspANI GGCC 1 cut(s) 299
BspCNI CTCAG 2 cut(s) 355, 387
BspFNI CGCG 4 cut(s) 276, 282, 339, 732
BspLI GGNNCC 1 cut(s) 299
BspT104I TTCGAA 3 cut(s) 44, 497, 713
BspTNI GGTCTC 1 cut(s) 265
BsrFI RCCGGY 1 cut(s) 395
BsrI ACTGG 1 cut(s) 299
BssAI RCCGGY 1 cut(s) 395
BssECI CCNNGG 1 cut(s) 515
BssMI GATC 1 cut(s) 420
BssNI GRCGYC 1 cut(s) 327
BssSI CACGAG 1 cut(s) 183
Bst2BI CACGAG 1 cut(s) 183
Bst2UI CCWGG 2 cut(s) 314, 726
Bst4CI ACNGT 1 cut(s) 683
Bst6I CTCTTC 3 cut(s) 26, 546, 596
BstACI GRCGYC 1 cut(s) 327
BstBI TTCGAA 3 cut(s) 44, 497, 713
BstC8I GCNNGC 2 cut(s) 280, 397
BstDEI CTNAG 3 cut(s) 363, 374, 592
BstF5I GGATG 2 cut(s) 71, 639
BstFNI CGCG 4 cut(s) 276, 282, 339, 732
BstHHI GCGC 1 cut(s) 278
BstKTI GATC 1 cut(s) 423
BstMAI GTCTC 3 cut(s) 180, 265, 409
BstMBI GATC 1 cut(s) 420
BstMCI CGRYCG 1 cut(s) 343
BstMWI GCNNNNNNNGC 4 cut(s) 232, 305, 368, 396
BstNI CCWGG 2 cut(s) 314, 726
BstPAI GACNNNNGTC 1 cut(s) 733
BstSCI CCNGG 2 cut(s) 312, 724
BstSLI GKGCMC 1 cut(s) 301
BstUI CGCG 4 cut(s) 276, 282, 339, 732
BsuRI GGCC 1 cut(s) 299
BtsCI GGATG 2 cut(s) 71, 639
BtsIMutI CAGTG 1 cut(s) 292
Cac8I GCNNGC 2 cut(s) 280, 397
CfoI GCGC 1 cut(s) 278
Cfr10I RCCGGY 1 cut(s) 395
Cfr13I GGNCC 3 cut(s) 297, 298, 316
CseI GACGC 3 cut(s) 241, 335, 738
CsiI ACCWGGT 1 cut(s) 312
CviJI RGCY 7 cut(s) 299, 412, 462, 484, 545, 591, 752
CviKI_1 RGCY 7 cut(s) 299, 412, 462, 484, 545, 591, 752
DdeI CTNAG 3 cut(s) 363, 374, 592
DpnI GATC 1 cut(s) 422
DpnII GATC 1 cut(s) 420
Eam1104I CTCTTC 3 cut(s) 26, 546, 596
EarI CTCTTC 3 cut(s) 26, 546, 596
EciI GGCGGA 1 cut(s) 414
Ecl136II GAGCTC 1 cut(s) 484
Eco24I GRGCYC 2 cut(s) 301, 486
Eco31I GGTCTC 1 cut(s) 265
Eco47I GGWCC 1 cut(s) 316
Eco53kI GAGCTC 1 cut(s) 484
Eco88I CYCGRG 1 cut(s) 227
EcoICRI GAGCTC 1 cut(s) 484
EcoO109I RGGNCCY 1 cut(s) 316
EcoRII CCWGG 2 cut(s) 312, 724
EcoT38I GRGCYC 2 cut(s) 301, 486
FaiI YATR 2 cut(s) 197, 756
FaqI GGGAC 3 cut(s) 244, 455, 505
FauI CCCGC 2 cut(s) 187, 287
FokI GGATG 2 cut(s) 58, 646
FriOI GRGCYC 2 cut(s) 301, 486
GlaI GCGC 1 cut(s) 277
GsuI CTGGAG 2 cut(s) 484, 567
HaeIII GGCC 1 cut(s) 299
HapII CCGG 1 cut(s) 396
HgaI GACGC 3 cut(s) 241, 335, 738
HhaI GCGC 1 cut(s) 278
Hin1I GRCGYC 1 cut(s) 327
Hin6I GCGC 1 cut(s) 276
HinP1I GCGC 1 cut(s) 276
HindIII AAGCTT 1 cut(s) 750
HinfI GANTC 5 cut(s) 192, 356, 402, 511, 734
HpaII CCGG 1 cut(s) 396
HphI GGTGA 4 cut(s) 30, 154, 640, 695
Hpy166II GTNNAC 2 cut(s) 334, 475
Hpy188I TCNGA 2 cut(s) 409, 516
Hpy188III TCNNGA 1 cut(s) 229
Hpy8I GTNNAC 2 cut(s) 334, 475
Hpy99I CGWCG 2 cut(s) 329, 452
HpyAV CCTTC 9 cut(s) 51, 61, 124, 169, 571, 600, 641, 655, 756
HpyCH4III ACNGT 1 cut(s) 683
HpyCH4V TGCA 1 cut(s) 637
HpyF10VI GCNNNNNNNGC 4 cut(s) 232, 305, 368, 396
HpyF3I CTNAG 3 cut(s) 363, 374, 592
Hsp92I GRCGYC 1 cut(s) 327
HspAI GCGC 1 cut(s) 276
KroI GCCGGC 1 cut(s) 395
KroNI GCCGGC 1 cut(s) 397
Kzo9I GATC 1 cut(s) 420
LmnI GCTCC 3 cut(s) 116, 240, 409
LweI GCATC 2 cut(s) 354, 624
MabI ACCWGGT 1 cut(s) 312
MaeIII GTNAC 1 cut(s) 380
MalI GATC 1 cut(s) 422
MboI GATC 1 cut(s) 420
MboII GAAGA 7 cut(s) 13, 563, 580, 583, 586, 613, 688
MhlI GDGCHC 3 cut(s) 294, 301, 486
MluCI AATT 2 cut(s) 694, 709
MlyI GAGTC 4 cut(s) 201, 365, 411, 743
MreI CGCCGGCG 1 cut(s) 395
MroNI GCCGGC 1 cut(s) 395
MroXI GAANNNNTTC 1 cut(s) 50
MspA1I CMGCKG 2 cut(s) 362, 378
MspI CCGG 1 cut(s) 396
MspR9I CCNGG 2 cut(s) 314, 726
MvaI CCWGG 2 cut(s) 314, 726
MvnI CGCG 4 cut(s) 276, 282, 339, 732
MwoI GCNNNNNNNGC 4 cut(s) 232, 305, 368, 396
NaeI GCCGGC 1 cut(s) 397
NdeII GATC 1 cut(s) 420
NgoMIV GCCGGC 1 cut(s) 395
NlaIV GGNNCC 1 cut(s) 299
NspV TTCGAA 3 cut(s) 44, 497, 713
PdiI GCCGGC 1 cut(s) 397
PdmI GAANNNNTTC 1 cut(s) 50
PfeI GAWTC 1 cut(s) 511
PflFI GACNNNGTC 2 cut(s) 191, 314
PfoI TCCNGGA 1 cut(s) 724
PleI GAGTC 4 cut(s) 200, 364, 410, 742
PpsI GAGTC 4 cut(s) 200, 364, 410, 742
PpuMI RGGWCCY 1 cut(s) 316
PshAI GACNNNNGTC 1 cut(s) 733
Psp124BI GAGCTC 1 cut(s) 486
Psp5II RGGWCCY 1 cut(s) 316
Psp6I CCWGG 2 cut(s) 312, 724
PspGI CCWGG 2 cut(s) 312, 724
PspN4I GGNNCC 1 cut(s) 299
PspOMI GGGCCC 1 cut(s) 297
PspPI GGNCC 3 cut(s) 297, 298, 316
PspPPI RGGWCCY 1 cut(s) 316
PsyI GACNNNGTC 2 cut(s) 191, 314
SacI GAGCTC 1 cut(s) 486
Sau3AI GATC 1 cut(s) 420
Sau96I GGNCC 3 cut(s) 297, 298, 316
SchI GAGTC 4 cut(s) 201, 365, 411, 743
ScrFI CCNGG 2 cut(s) 314, 726
SduI GDGCHC 3 cut(s) 294, 301, 486
SexAI ACCWGGT 1 cut(s) 312
SfaNI GCATC 2 cut(s) 354, 624
SfuI TTCGAA 3 cut(s) 44, 497, 713
SgrAI CRCCGGYG 1 cut(s) 395
SinI GGWCC 1 cut(s) 316
Sse9I AATT 2 cut(s) 694, 709
SsiI CCGC 8 cut(s) 180, 274, 280, 337, 343, 360, 378, 399
SstI GAGCTC 1 cut(s) 486
StyD4I CCNGG 2 cut(s) 312, 724
TaaI ACNGT 1 cut(s) 683
TaqI TCGA 6 cut(s) 44, 288, 348, 480, 497, 713
TasI AATT 2 cut(s) 694, 709
TfiI GAWTC 1 cut(s) 511
TscAI CASTG 1 cut(s) 299
TspRI CASTG 1 cut(s) 299
Tth111I GACNNNGTC 2 cut(s) 191, 314
VpaK11BI GGWCC 1 cut(s) 316
XmnI GAANNNNTTC 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.