Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010942

Physical Location & Seq

Genomic Coordinates Reverse (-)

18953458 .. 18955053

Gene Structure 1596 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G51170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGGAGACAAGACCATCATCATCATCTTCTCTTTCACCGGCGACGAATCTTAACCTCGACAGACTCAAAGTTCTCAAACTCCTCGGAAAAGGCGCCACCGGAACAGTCTTCCTCGTCCACGACTCTGTTTCCGACTCCTCTGTTTCTTCTCCCTTTGCTTTAAAACTCGTCGACAAATCCTCCGCATCTTCTCTCCGCCGTGCAAGGTGGGAAATTCAGATCCTCCGACGTCTCTCCGATGACACAAACCCAAACCCATTTCTCCCAAAACTCTTAGCTTCATCAGAATCCTCTGAATTCATCGCATGGGCTTTACCTTACTGCTCCGGTGGAGATTTAAACGTCCTCCGACAACGTCAAAACGACGGCGTTTTTAGCTCCTCCGTTATTAAATTCTACTTAGCTGAAATCGTCTGTGCGCTTGACCACCTTCATACCATGGGGATCGCTTACAGAGACTTGAAACCTGAGAATATACTTCTTCAAGAATCGGGTCACGTGACTTTAACCGATTTTGATCTCTCTTGTAGTCTCAATAAACCCACCCGACCCGAATTCTATCATCTATCCGACCCGGAACCGGATCCGAACCCGGAATCGAATCTCAGTCATAATAAGAAAAGTCTGAGAATTTTCCGGCAGAAGAAGAAGAAGACGAAGTCAGCTCGTGTTAACCCGATTACACGACGGAGACTGAGTTTTTCCGGCGGTGAACGGTCAAATTCGTTTGTTGGGACTGATGAGTATATATCGCCGGAGGTAATTCGCGGCGACGGACACGATTTTGCCGTCGATTGGTGGGCTCTCGGAGTTTTAACGTACGAGATGATGTACGGAGAGACACCGTTCAAAGGAAGAAACAAAAAAGAAACTTTTCGTAACGTGCTGGTGAAGGAACCTGAATTCGCCGGGAAACCGTCGGATTTAACCGATTTGATCCGTCGGTTATTGGTTAAAGATCCGACGAAGCGGTTTGGTTTCTGGCGAGGCGCGGCGGAGATAAAGGAGCATGCTTTTTTCAAAGGAGTGAGGTGGGAGTTGTTAACGGAAGTGTTGAGACCTCCGTTTATTCCGTTGAGAGATGACGGAGACTTGACGGGGAAAGTAACGGAGGAAAGTGGGTTTGGTATAAAGGAATATTTCGAGAAACTGAAAACGCCGCCGTTACCGTTACCGCACGAGTGTTCTGAAAACAATCCGTTTGTTGATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009611 GO:0009791 GO:0009888 GO:0009908 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0035556 GO:0035670 GO:0036211 GO:0036290 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051302 GO:0051716 GO:0051782 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0080060 GO:0090567 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

404

Amino Acids

45.66

Weight (kDa)

8.69

Isoelectric Point (pI)

51.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	23 - 183	1.1e-28	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	23 - 178	1.3e-12	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	237 - 340	5.4e-20	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	248 - 327	2e-06	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0010942)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51170 AT3G20830
fragaria_vesca	FvH4_3g43220
malus_domestica	MD03G1023600.v1.1 MD11G1028700.v1.1
prunus_persica	Prupe.6G022800_v2.0.a1
pyrus_communis	pycom03g02020 pycom08g08880 pycom11g02220 pycom13g22320
rosa_chinensis	RchiOBHm_Chr5g0077231
rosa_laevigata	RLG00000036675
rosa_multiflora	Rmu_sc0005576.1_g000006
rosa_roxburghii	Rroxscaffold_1G00004780
rosa_rugosa	Rorug05G0453000
rosa_samantha	Rh5AG508000 Rh5BG529400 Rh5CG553800 Rh5DG541700
rosa_wichuraiana	Rw5G046950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	232
AccB1I	GGYRCC	1 cut(s)	92
AccI	GTMKAC	1 cut(s)	171
AccII	CGCG	2 cut(s)	768, 992
AciI	CCGC	9 cut(s)	183, 196, 708, 768, 970, 992, 995, 1160, 1175
AclWI	GGATC	6 cut(s)	214, 452, 578, 591, 931, 953
AcsI	RAATTY	7 cut(s)	213, 296, 392, 554, 630, 721, 902
AcvI	CACGTG	1 cut(s)	499
AcyI	GRCGYC	2 cut(s)	93, 229
AfaI	GTAC	2 cut(s)	821, 833
AfiI	CCNNNNNNNGG	3 cut(s)	580, 795, 851
AgsI	TTSAA	4 cut(s)	463, 485, 850, 1021
AjuI	GAANNNNNNNTTGG	2 cut(s)	1107, 1139
AluBI	AGCT	4 cut(s)	278, 378, 404, 665
AluI	AGCT	4 cut(s)	278, 378, 404, 665
Alw26I	GTCTC	7 cut(s)	236, 450, 536, 685, 833, 1051, 1083
AlwI	GGATC	6 cut(s)	214, 452, 578, 591, 931, 953
ApoI	RAATTY	7 cut(s)	213, 296, 392, 554, 630, 721, 902
Asp700I	GAANNNNTTC	1 cut(s)	873
AspLEI	GCGC	3 cut(s)	95, 421, 992
AsuC2I	CCSGG	3 cut(s)	575, 593, 910
AsuHPI	GGTGA	3 cut(s)	27, 722, 901
BamHI	GGATCC	1 cut(s)	583
BanI	GGYRCC	1 cut(s)	92
BanII	GRGCYC	1 cut(s)	805
BauI	CACGAG	2 cut(s)	666, 1178
BbrPI	CACGTG	1 cut(s)	499
BbsI	GAAGAC	2 cut(s)	100, 659
BccI	CCATC	1 cut(s)	22
BceAI	ACGGC	4 cut(s)	183, 382, 773, 1147
BcnI	CCSGG	3 cut(s)	575, 593, 910
BcoDI	GTCTC	7 cut(s)	236, 450, 536, 685, 833, 1051, 1083
BfoI	RGCGCY	1 cut(s)	96
BisI	GCNGC	3 cut(s)	769, 993, 1160
BlsI	GCNGC	3 cut(s)	770, 994, 1161
Bme1390I	CCNGG	3 cut(s)	575, 593, 910
BmiI	GGNNCC	4 cut(s)	94, 579, 585, 897
BmrFI	CCNGG	3 cut(s)	575, 593, 910
BmsI	GCATC	1 cut(s)	194
BpiI	GAAGAC	2 cut(s)	100, 659
BpuMI	CCSGG	3 cut(s)	575, 593, 910
BsaAI	YACGTR	1 cut(s)	499
BsaBI	GATNNNNATC	1 cut(s)	516
BsaHI	GRCGYC	2 cut(s)	93, 229
BsaI	GGTCTC	1 cut(s)	1051
BsaJI	CCNNGG	2 cut(s)	82, 438
BsaWI	WCCGGW	3 cut(s)	98, 326, 580
BsaXI	ACNNNNNCTCC	4 cut(s)	164, 194, 682, 712
Bsc4I	CCNNNNNNNGG	3 cut(s)	580, 795, 851
Bse118I	RCCGGY	1 cut(s)	37
Bse8I	GATNNNNATC	1 cut(s)	516
BseDI	CCNNGG	2 cut(s)	82, 438
BseJI	GATNNNNATC	1 cut(s)	516
BseLI	CCNNNNNNNGG	3 cut(s)	580, 795, 851
BseMII	CTCAG	4 cut(s)	459, 617, 619, 686
BseRI	GAGGAG	3 cut(s)	71, 127, 370
Bsh1236I	CGCG	2 cut(s)	768, 992
BshNI	GGYRCC	1 cut(s)	92
BsiWI	CGTACG	1 cut(s)	819
BslFI	GGGAC	1 cut(s)	748
BslI	CCNNNNNNNGG	3 cut(s)	580, 795, 851
BsmAI	GTCTC	7 cut(s)	236, 450, 536, 685, 833, 1051, 1083
BsmBI	CGTCTC	1 cut(s)	236
BsmFI	GGGAC	1 cut(s)	748
Bso31I	GGTCTC	1 cut(s)	1051
Bsp1286I	GDGCHC	1 cut(s)	805
Bsp143I	GATC	6 cut(s)	219, 444, 517, 583, 936, 958
Bsp19I	CCATGG	1 cut(s)	438
BspACI	CCGC	9 cut(s)	183, 196, 708, 768, 970, 992, 995, 1160, 1175
BspCNI	CTCAG	4 cut(s)	460, 618, 618, 687
BspFNI	CGCG	2 cut(s)	768, 992
BspLI	GGNNCC	4 cut(s)	94, 579, 585, 897
BspPI	GGATC	6 cut(s)	214, 452, 578, 591, 931, 953
BspT107I	GGYRCC	1 cut(s)	92
BspTNI	GGTCTC	1 cut(s)	1051
BsrFI	RCCGGY	1 cut(s)	37
BssAI	RCCGGY	1 cut(s)	37
BssECI	CCNNGG	2 cut(s)	82, 438
BssMI	GATC	6 cut(s)	219, 444, 517, 583, 936, 958
BssNI	GRCGYC	2 cut(s)	93, 229
BssSI	CACGAG	2 cut(s)	666, 1178
BssT1I	CCWWGG	1 cut(s)	438
Bst2BI	CACGAG	2 cut(s)	666, 1178
Bst4CI	ACNGT	5 cut(s)	106, 717, 846, 918, 1170
BstACI	GRCGYC	2 cut(s)	93, 229
BstBAI	YACGTR	1 cut(s)	499
BstC8I	GCNNGC	1 cut(s)	1011
BstDEI	CTNAG	6 cut(s)	274, 400, 468, 605, 626, 695
BstDSI	CCRYGG	1 cut(s)	438
BstFNI	CGCG	2 cut(s)	768, 992
BstH2I	RGCGCY	1 cut(s)	96
BstHHI	GCGC	3 cut(s)	95, 421, 992
BstKTI	GATC	6 cut(s)	222, 447, 520, 586, 939, 961
BstMAI	GTCTC	7 cut(s)	236, 450, 536, 685, 833, 1051, 1083
BstMBI	GATC	6 cut(s)	219, 444, 517, 583, 936, 958
BstMWI	GCNNNNNNNGC	1 cut(s)	375
BstNSI	RCATGY	1 cut(s)	1013
BstSCI	CCNGG	3 cut(s)	573, 591, 908
BstUI	CGCG	2 cut(s)	768, 992
BstV2I	GAAGAC	2 cut(s)	100, 659
BstX2I	RGATCY	3 cut(s)	219, 583, 958
BstYI	RGATCY	3 cut(s)	219, 583, 958
BtgI	CCRYGG	1 cut(s)	438
BtgZI	GCGATG	1 cut(s)	286
Cac8I	GCNNGC	1 cut(s)	1011
CfoI	GCGC	3 cut(s)	95, 421, 992
Cfr10I	RCCGGY	1 cut(s)	37
Csp6I	GTAC	2 cut(s)	820, 832
CviAII	CATG	3 cut(s)	306, 439, 1010
CviJI	RGCY	6 cut(s)	278, 311, 378, 404, 665, 803
CviKI_1	RGCY	6 cut(s)	278, 311, 378, 404, 665, 803
CviQI	GTAC	2 cut(s)	820, 832
DdeI	CTNAG	6 cut(s)	274, 400, 468, 605, 626, 695
DinI	GGCGCC	1 cut(s)	94
DpnI	GATC	6 cut(s)	221, 446, 519, 585, 938, 960
DpnII	GATC	6 cut(s)	219, 444, 517, 583, 936, 958
DraI	TTTAAA	2 cut(s)	162, 339
EciI	GGCGGA	2 cut(s)	185, 1010
Eco130I	CCWWGG	1 cut(s)	438
Eco24I	GRGCYC	1 cut(s)	805
Eco31I	GGTCTC	1 cut(s)	1051
Eco72I	CACGTG	1 cut(s)	499
EcoRI	GAATTC	3 cut(s)	296, 554, 902
EcoT14I	CCWWGG	1 cut(s)	438
EcoT38I	GRGCYC	1 cut(s)	805
EgeI	GGCGCC	1 cut(s)	94
EheI	GGCGCC	1 cut(s)	94
ErhI	CCWWGG	1 cut(s)	438
Esp3I	CGTCTC	1 cut(s)	236
FaeI	CATG	3 cut(s)	309, 442, 1013
FaiI	YATR	9 cut(s)	307, 435, 440, 476, 612, 747, 749, 1011, 1130
FaqI	GGGAC	1 cut(s)	748
FatI	CATG	3 cut(s)	305, 438, 1009
FblI	GTMKAC	1 cut(s)	171
Fnu4HI	GCNGC	3 cut(s)	769, 993, 1160
FriOI	GRGCYC	1 cut(s)	805
Fsp4HI	GCNGC	3 cut(s)	769, 993, 1160
GlaI	GCGC	3 cut(s)	94, 420, 991
GluI	GCNGC	3 cut(s)	769, 993, 1160
HaeII	RGCGCY	1 cut(s)	96
HhaI	GCGC	3 cut(s)	95, 421, 992
Hin1I	GRCGYC	2 cut(s)	93, 229
Hin1II	CATG	3 cut(s)	309, 442, 1013
Hin6I	GCGC	3 cut(s)	93, 419, 990
HinP1I	GCGC	3 cut(s)	93, 419, 990
HincII	GTYRAC	3 cut(s)	172, 673, 1044
HindII	GTYRAC	3 cut(s)	172, 673, 1044
HinfI	GANTC	8 cut(s)	46, 63, 122, 134, 287, 488, 596, 601
HpaI	GTTAAC	2 cut(s)	673, 1044
HphI	GGTGA	3 cut(s)	27, 722, 901
Hpy166II	GTNNAC	5 cut(s)	118, 172, 673, 713, 1044
Hpy188III	TCNNGA	2 cut(s)	485, 1144
Hpy8I	GTNNAC	5 cut(s)	118, 172, 673, 713, 1044
HpyAV	CCTTC	2 cut(s)	440, 886
HpyCH4III	ACNGT	5 cut(s)	106, 717, 846, 918, 1170
HpyCH4IV	ACGT	6 cut(s)	229, 342, 355, 498, 818, 882
HpyCH4V	TGCA	1 cut(s)	203
HpyF10VI	GCNNNNNNNGC	1 cut(s)	375
HpyF3I	CTNAG	6 cut(s)	274, 400, 468, 605, 626, 695
HpySE526I	ACGT	6 cut(s)	229, 342, 355, 498, 818, 882
Hsp92I	GRCGYC	2 cut(s)	93, 229
Hsp92II	CATG	3 cut(s)	309, 442, 1013
HspAI	GCGC	3 cut(s)	93, 419, 990
KasI	GGCGCC	1 cut(s)	92
KspAI	GTTAAC	2 cut(s)	673, 1044
Kzo9I	GATC	6 cut(s)	219, 444, 517, 583, 936, 958
LmnI	GCTCC	3 cut(s)	329, 383, 1006
LweI	GCATC	1 cut(s)	194
MaeII	ACGT	6 cut(s)	229, 342, 355, 498, 818, 882
MaeIII	GTNAC	6 cut(s)	494, 499, 878, 1105, 1164, 1170
MalI	GATC	6 cut(s)	221, 446, 519, 585, 938, 960
MboI	GATC	6 cut(s)	219, 444, 517, 583, 936, 958
MflI	RGATCY	3 cut(s)	219, 583, 958
MhlI	GDGCHC	1 cut(s)	805
MluCI	AATT	8 cut(s)	213, 296, 392, 554, 630, 721, 762, 902
Mly113I	GGCGCC	1 cut(s)	93
MlyI	GAGTC	3 cut(s)	57, 116, 128
MmeI	TCCRAC	6 cut(s)	156, 250, 373, 594, 900, 986
MroXI	GAANNNNTTC	1 cut(s)	873
MspR9I	CCNGG	3 cut(s)	575, 593, 910
MvnI	CGCG	2 cut(s)	768, 992
MwoI	GCNNNNNNNGC	1 cut(s)	375
NarI	GGCGCC	1 cut(s)	93
NciI	CCSGG	3 cut(s)	575, 593, 910
NcoI	CCATGG	1 cut(s)	438
NdeII	GATC	6 cut(s)	219, 444, 517, 583, 936, 958
NlaIII	CATG	3 cut(s)	309, 442, 1013
NlaIV	GGNNCC	4 cut(s)	94, 579, 585, 897
NmuCI	GTSAC	2 cut(s)	494, 499
NspI	RCATGY	1 cut(s)	1013
PaeI	GCATGC	1 cut(s)	1013
PcsI	WCGNNNNNNNCGW	1 cut(s)	786
PdmI	GAANNNNTTC	1 cut(s)	873
PfeI	GAWTC	5 cut(s)	46, 287, 488, 596, 601
Pfl23II	CGTACG	1 cut(s)	819
PflFI	GACNNNGTC	2 cut(s)	354, 658
PkrI	GCNGC	3 cut(s)	770, 994, 1161
PleI	GAGTC	3 cut(s)	57, 116, 128
PluTI	GGCGCC	1 cut(s)	96
PmaCI	CACGTG	1 cut(s)	499
PmlI	CACGTG	1 cut(s)	499
PpsI	GAGTC	3 cut(s)	57, 116, 128
Ppu21I	YACGTR	1 cut(s)	499
PspCI	CACGTG	1 cut(s)	499
PspLI	CGTACG	1 cut(s)	819
PspN4I	GGNNCC	4 cut(s)	94, 579, 585, 897
PsuI	RGATCY	3 cut(s)	219, 583, 958
PsyI	GACNNNGTC	2 cut(s)	354, 658
RsaI	GTAC	2 cut(s)	821, 833
RsaNI	GTAC	2 cut(s)	820, 832
SalI	GTCGAC	1 cut(s)	170
SatI	GCNGC	3 cut(s)	769, 993, 1160
Sau3AI	GATC	6 cut(s)	219, 444, 517, 583, 936, 958
SchI	GAGTC	3 cut(s)	57, 116, 128
ScrFI	CCNGG	3 cut(s)	575, 593, 910
SduI	GDGCHC	1 cut(s)	805
SfaNI	GCATC	1 cut(s)	194
SfoI	GGCGCC	1 cut(s)	94
SgrAI	CRCCGGYG	1 cut(s)	37
SphI	GCATGC	1 cut(s)	1013
Sse9I	AATT	8 cut(s)	213, 296, 392, 554, 630, 721, 762, 902
SsiI	CCGC	9 cut(s)	183, 196, 708, 768, 970, 992, 995, 1160, 1175
SspDI	GGCGCC	1 cut(s)	92
SspI	AATATT	1 cut(s)	1139
StyD4I	CCNGG	3 cut(s)	573, 591, 908
StyI	CCWWGG	1 cut(s)	438
TaaI	ACNGT	5 cut(s)	106, 717, 846, 918, 1170
TaiI	ACGT	6 cut(s)	232, 345, 358, 501, 821, 885
TaqI	TCGA	5 cut(s)	57, 171, 599, 792, 1143
TasI	AATT	8 cut(s)	213, 296, 392, 554, 630, 721, 762, 902
TauI	GCSGC	3 cut(s)	771, 995, 1162
TfiI	GAWTC	5 cut(s)	46, 287, 488, 596, 601
TseFI	GTSAC	2 cut(s)	494, 499
Tsp45I	GTSAC	2 cut(s)	494, 499
TspDTI	ATGAA	3 cut(s)	270, 289, 422
Tth111I	GACNNNGTC	2 cut(s)	354, 658
XapI	RAATTY	7 cut(s)	213, 296, 392, 554, 630, 721, 902
XceI	RCATGY	1 cut(s)	1013
XmiI	GTMKAC	1 cut(s)	171
XmnI	GAANNNNTTC	1 cut(s)	873
ZraI	GACGTC	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.