Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0010942

Physical Location & Seq

Genomic Coordinates Reverse (-)

19565108 .. 19565712

Gene Structure 605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g22320.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGGCATCGTTTTCTTAGTCCACGACCCGTTATCCGACCCCTCTGCCCGTCGCCCGTTCGCTCTCAAAGTTGTTGACAAGTCCGCCTTCCACTCTAAACTATCCAGCCCAAACCCTTACCTGTTTCTACCCTCCATCATGGGGTCGTTCGAGTCTGATGAGTTCATGGGATGGGTTGTCCCTTACTGCCCCGTATTTAAGTTTAAATTCGTACCAATAGTTCCCCAAAATCAACGACTTGTGACCTGTAATTTTGTAATTGAAATCACACATTCCACTTTTCGGGAAAGTCAGAAAAAACATGGACGCTTGAAAGTAATGAAAAATGGATACTATACTTCCATGAATGAAGCCAAAACAAAACTACCTAGAAAGACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009611 GO:0009791 GO:0009888 GO:0009908 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0035556 GO:0035670 GO:0036211 GO:0036290 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051302 GO:0051716 GO:0051782 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0080060 GO:0090567 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

127

Amino Acids

14.49

Weight (kDa)

9.81

Isoelectric Point (pI)

32.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010942)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51170 AT3G20830
fragaria_vesca	FvH4_3g43220
malus_domestica	MD03G1023600.v1.1 MD11G1028700.v1.1
prunus_persica	Prupe.6G022800_v2.0.a1
pyrus_communis	pycom03g02020 pycom08g08880 pycom11g02220 pycom13g22320
rosa_chinensis	RchiOBHm_Chr5g0077231
rosa_laevigata	RLG00000036675
rosa_multiflora	Rmu_sc0005576.1_g000006
rosa_roxburghii	Rroxscaffold_1G00004780
rosa_rugosa	Rorug05G0453000
rosa_samantha	Rh5AG508000 Rh5BG529400 Rh5CG553800 Rh5DG541700
rosa_wichuraiana	Rw5G046950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	84
AcsI	RAATTY	1 cut(s)	206
AfaI	GTAC	1 cut(s)	213
AfiI	CCNNNNNNNGG	2 cut(s)	141, 282
AgsI	TTSAA	2 cut(s)	263, 313
ApoI	RAATTY	1 cut(s)	206
BccI	CCATC	2 cut(s)	143, 165
BcgI	CGANNNNNNTGC	2 cut(s)	26, 60
BciVI	GTATCC	1 cut(s)	323
BfaI	CTAG	2 cut(s)	369, 379
BfuI	GTATCC	1 cut(s)	323
BmsI	GCATC	1 cut(s)	15
Bsc4I	CCNNNNNNNGG	2 cut(s)	141, 282
BseGI	GGATG	1 cut(s)	176
BseLI	CCNNNNNNNGG	2 cut(s)	141, 282
BslFI	GGGAC	1 cut(s)	164
BslI	CCNNNNNNNGG	2 cut(s)	141, 282
BsmFI	GGGAC	1 cut(s)	164
BspACI	CCGC	1 cut(s)	84
BstDEI	CTNAG	1 cut(s)	16
BstF5I	GGATG	1 cut(s)	176
BsuI	GTATCC	1 cut(s)	323
BtsCI	GGATG	1 cut(s)	176
CseI	GACGC	1 cut(s)	315
Csp6I	GTAC	1 cut(s)	212
CviAII	CATG	4 cut(s)	139, 166, 302, 343
CviJI	RGCY	2 cut(s)	108, 353
CviKI_1	RGCY	2 cut(s)	108, 353
CviQI	GTAC	1 cut(s)	212
DdeI	CTNAG	1 cut(s)	16
DraI	TTTAAA	1 cut(s)	205
EciI	GGCGGA	1 cut(s)	73
FaeI	CATG	4 cut(s)	142, 169, 305, 346
FaiI	YATR	5 cut(s)	140, 167, 303, 336, 344
FalI	AAGNNNNNCTT	2 cut(s)	71, 103
FaqI	GGGAC	1 cut(s)	164
FatI	CATG	4 cut(s)	138, 165, 301, 342
FokI	GGATG	1 cut(s)	183
FspBI	CTAG	2 cut(s)	369, 379
HgaI	GACGC	1 cut(s)	315
Hin1II	CATG	4 cut(s)	142, 169, 305, 346
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HinfI	GANTC	1 cut(s)	152
Hpy166II	GTNNAC	2 cut(s)	22, 76
Hpy188I	TCNGA	3 cut(s)	37, 157, 294
Hpy188III	TCNNGA	1 cut(s)	284
Hpy8I	GTNNAC	2 cut(s)	22, 76
Hpy99I	CGWCG	1 cut(s)	54
HpyAV	CCTTC	1 cut(s)	97
HpyF3I	CTNAG	1 cut(s)	16
Hsp92II	CATG	4 cut(s)	142, 169, 305, 346
LpnPI	CCDG	3 cut(s)	118, 134, 259
LweI	GCATC	1 cut(s)	15
MaeI	CTAG	2 cut(s)	369, 379
MaeIII	GTNAC	1 cut(s)	241
MluCI	AATT	3 cut(s)	206, 250, 258
MlyI	GAGTC	1 cut(s)	161
MmeI	TCCRAC	1 cut(s)	60
MnlI	CCTC	2 cut(s)	52, 142
MseI	TTAA	2 cut(s)	198, 204
NlaIII	CATG	4 cut(s)	142, 169, 305, 346
NmuCI	GTSAC	1 cut(s)	241
PleI	GAGTC	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	160
PsrI	GAACNNNNNNTAC	2 cut(s)	204, 236
RsaI	GTAC	1 cut(s)	213
RsaNI	GTAC	1 cut(s)	212
SaqAI	TTAA	2 cut(s)	198, 204
SchI	GAGTC	1 cut(s)	161
SetI	ASST	4 cut(s)	123, 248, 370, 380
SfaNI	GCATC	1 cut(s)	15
Sse9I	AATT	3 cut(s)	206, 250, 258
SsiI	CCGC	1 cut(s)	84
SspMI	CTAG	2 cut(s)	369, 379
TaqI	TCGA	1 cut(s)	150
TasI	AATT	3 cut(s)	206, 250, 258
Tru1I	TTAA	2 cut(s)	198, 204
Tru9I	TTAA	2 cut(s)	198, 204
TseFI	GTSAC	1 cut(s)	241
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	4 cut(s)	154, 335, 359, 363
XapI	RAATTY	1 cut(s)	206
XspI	CTAG	2 cut(s)	369, 379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.