Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0010942

Physical Location & Seq

Genomic Coordinates Forward (+)

77083736 .. 77084518

Gene Structure 783 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG553800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGGGATCGCTTACCGGGATTTGAAGCCAGAGAACGTGCTGATCCAACAGTCGGGTCACGTGACCCTCACGGACTTCGACCTTTCCAGAAGCCTGAAACACCAGGCCGTTAAAACCGTCGTGGACGACGCGCCGGAGATCCGCCGCAAACACCGCAGGAACCTCACGCGCTGGATCAGCATTATCAACGAGAACAACAAGGCCGGGTTGAAGAAGGCCAAGTCTGCCCGGGTCAGCCCGGTCAGCCGCCGCAAGCCGAGCTTCTCCGACAACGGCGAGCGGGCCAACTCGTTCGTCGGCACAGAGGAGTACGTCTCCCCCGAGGTCGTCCGCGGCGAGGGCCACGAGTTCGCCGTGGACTGGTGGGCCCTAGGGATTCTCACCTACGAGTGCCTCTACGGGACGACGCCGTTTAAGGGGAAGAGCCGGAAGGAGACATTCCGGAACGTGCTGACGAAGACGCCGGAGTTCGTGGGGAAACGGACGGCGCTGACGGACCTGATCGAACGGCTGCTGCACAAGGACCCCACCAGGCGGTTGGGGTACGTGAGAGGAGCGTGCGAGATCAAAGAGCATGAGTTTTTTCGCGGGGTGAGGTGGGACCTACTAACGGAGGTGTCACGGGCTCCGTTTATTCCGCCGAGGGAGGAGGACGGAGACGTAACGGAGAGCAGGGCCGCCTCGGCGAGATGTGGGGCGAGCGTGAGAGAGTATTTCCAAAAGTTACGGGCTCCTCCGCCGTCAATGCCGCCGTCGCCGGATTGTCAGTTAGCGGAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009611 GO:0009791 GO:0009888 GO:0009908 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0035556 GO:0035670 GO:0036211 GO:0036290 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051302 GO:0051716 GO:0051782 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0080060 GO:0090567 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

260

Amino Acids

29.6

Weight (kDa)

9.44

Isoelectric Point (pI)

55.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	1 - 41	6.6e-09	Protein kinase domain
Pkinase	PF00069	91 - 195	4.8e-20	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010942)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51170 AT3G20830
fragaria_vesca	FvH4_3g43220
malus_domestica	MD03G1023600.v1.1 MD11G1028700.v1.1
prunus_persica	Prupe.6G022800_v2.0.a1
pyrus_communis	pycom03g02020 pycom08g08880 pycom11g02220 pycom13g22320
rosa_chinensis	RchiOBHm_Chr5g0077231
rosa_laevigata	RLG00000036675
rosa_multiflora	Rmu_sc0005576.1_g000006
rosa_roxburghii	Rroxscaffold_1G00004780
rosa_rugosa	Rorug05G0453000
rosa_samantha	Rh5AG508000 Rh5BG529400 Rh5CG553800 Rh5DG541700
rosa_wichuraiana	Rw5G046950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	280
AccII	CGCG	4 cut(s)	131, 169, 333, 588
AccIII	TCCGGA	1 cut(s)	441
AclWI	GGATC	4 cut(s)	14, 37, 133, 182
AcvI	CACGTG	1 cut(s)	61
AcyI	GRCGYC	2 cut(s)	407, 461
AfaI	GTAC	2 cut(s)	311, 545
AfiI	CCNNNNNNNGG	6 cut(s)	52, 337, 360, 416, 534, 610
AgsI	TTSAA	2 cut(s)	25, 211
AjnI	CCWGG	2 cut(s)	102, 530
AluBI	AGCT	1 cut(s)	261
AluI	AGCT	1 cut(s)	261
Alw26I	GTCTC	3 cut(s)	319, 428, 651
AlwI	GGATC	4 cut(s)	14, 37, 133, 182
Ama87I	CYCGRG	2 cut(s)	228, 320
Aor13HI	TCCGGA	1 cut(s)	441
AoxI	GGCC	7 cut(s)	105, 201, 216, 282, 340, 366, 675
ApaI	GGGCCC	1 cut(s)	370
ApeKI	GCWGC	2 cut(s)	511, 514
AspA2I	CCTAGG	1 cut(s)	370
AspLEI	GCGC	3 cut(s)	133, 171, 490
AspS9I	GGNCC	8 cut(s)	282, 340, 366, 367, 496, 523, 601, 675
AsuC2I	CCSGG	5 cut(s)	17, 205, 229, 230, 239
AsuHPI	GGTGA	2 cut(s)	373, 604
AvaI	CYCGRG	2 cut(s)	228, 320
AvaII	GGWCC	3 cut(s)	496, 523, 601
AvrII	CCTAGG	1 cut(s)	370
BaeGI	GKGCMC	1 cut(s)	370
BanII	GRGCYC	3 cut(s)	370, 628, 733
BauI	CACGAG	1 cut(s)	344
BbrPI	CACGTG	1 cut(s)	61
BbsI	GAAGAC	1 cut(s)	464
BbvI	GCAGC	2 cut(s)	498, 501
BceAI	ACGGC	8 cut(s)	92, 289, 338, 394, 501, 524, 724, 736
BciT130I	CCWGG	2 cut(s)	104, 532
BcnI	CCSGG	5 cut(s)	17, 205, 229, 230, 239
BcoDI	GTCTC	3 cut(s)	319, 428, 651
BfaI	CTAG	1 cut(s)	371
BfoI	RGCGCY	1 cut(s)	491
BglI	GCCNNNNNGGC	1 cut(s)	683
BisI	GCNGC	8 cut(s)	145, 247, 250, 334, 512, 515, 678, 749
BlnI	CCTAGG	1 cut(s)	370
BlsI	GCNGC	8 cut(s)	146, 248, 251, 335, 513, 516, 679, 750
Bme1390I	CCNGG	7 cut(s)	17, 104, 205, 229, 230, 239, 532
Bme18I	GGWCC	3 cut(s)	496, 523, 601
BmeT110I	CYCGRG	2 cut(s)	228, 320
BmgT120I	GGNCC	8 cut(s)	282, 340, 366, 367, 496, 523, 601, 675
BmiI	GGNNCC	6 cut(s)	161, 368, 525, 602, 627, 732
BmrFI	CCNGG	7 cut(s)	17, 104, 205, 229, 230, 239, 532
BpiI	GAAGAC	1 cut(s)	464
BplI	GAGNNNNNCTC	2 cut(s)	299, 331
BpuMI	CCSGG	5 cut(s)	17, 205, 229, 230, 239
BsaAI	YACGTR	2 cut(s)	61, 547
BsaHI	GRCGYC	2 cut(s)	407, 461
BsaJI	CCNNGG	7 cut(s)	228, 321, 331, 354, 370, 641, 681
BsaWI	WCCGGW	1 cut(s)	441
Bsc4I	CCNNNNNNNGG	6 cut(s)	52, 337, 360, 416, 534, 610
Bse1I	ACTGG	1 cut(s)	365
BseAI	TCCGGA	1 cut(s)	441
BseBI	CCWGG	2 cut(s)	104, 532
BseDI	CCNNGG	7 cut(s)	228, 321, 331, 354, 370, 641, 681
BseLI	CCNNNNNNNGG	6 cut(s)	52, 337, 360, 416, 534, 610
BseNI	ACTGG	1 cut(s)	365
BseRI	GAGGAG	4 cut(s)	320, 567, 662, 723
BseSI	GKGCMC	1 cut(s)	370
BseXI	GCAGC	2 cut(s)	498, 501
BsgI	GTGCAG	1 cut(s)	500
Bsh1236I	CGCG	4 cut(s)	131, 169, 333, 588
BshFI	GGCC	7 cut(s)	107, 203, 218, 284, 342, 368, 677
BsiHKCI	CYCGRG	2 cut(s)	228, 320
BsiSI	CCGG	9 cut(s)	16, 134, 204, 229, 239, 427, 442, 464, 758
BslFI	GGGAC	2 cut(s)	415, 614
BslI	CCNNNNNNNGG	6 cut(s)	52, 337, 360, 416, 534, 610
BsmAI	GTCTC	3 cut(s)	319, 428, 651
BsmBI	CGTCTC	2 cut(s)	319, 651
BsmFI	GGGAC	2 cut(s)	415, 614
BsnI	GGCC	7 cut(s)	107, 203, 218, 284, 342, 368, 677
BsoBI	CYCGRG	2 cut(s)	228, 320
Bsp120I	GGGCCC	1 cut(s)	366
Bsp1286I	GDGCHC	3 cut(s)	370, 628, 733
Bsp13I	TCCGGA	1 cut(s)	441
Bsp143I	GATC	6 cut(s)	6, 42, 138, 174, 501, 564
BspANI	GGCC	7 cut(s)	107, 203, 218, 284, 342, 368, 677
BspEI	TCCGGA	1 cut(s)	441
BspFNI	CGCG	4 cut(s)	131, 169, 333, 588
BspLI	GGNNCC	6 cut(s)	161, 368, 525, 602, 627, 732
BspPI	GGATC	4 cut(s)	14, 37, 133, 182
BspQI	GCTCTTC	1 cut(s)	416
BsrBI	CCGCTC	1 cut(s)	280
BsrI	ACTGG	1 cut(s)	365
BssECI	CCNNGG	7 cut(s)	228, 321, 331, 354, 370, 641, 681
BssMI	GATC	6 cut(s)	6, 42, 138, 174, 501, 564
BssNI	GRCGYC	2 cut(s)	407, 461
BssSI	CACGAG	1 cut(s)	344
BssT1I	CCWWGG	1 cut(s)	370
Bst2BI	CACGAG	1 cut(s)	344
Bst2UI	CCWGG	2 cut(s)	104, 532
Bst4CI	ACNGT	2 cut(s)	51, 118
Bst6I	CTCTTC	1 cut(s)	416
BstACI	GRCGYC	2 cut(s)	407, 461
BstBAI	YACGTR	2 cut(s)	61, 547
BstC8I	GCNNGC	5 cut(s)	254, 278, 282, 559, 700
BstDSI	CCRYGG	2 cut(s)	331, 354
BstFNI	CGCG	4 cut(s)	131, 169, 333, 588
BstH2I	RGCGCY	1 cut(s)	491
BstHHI	GCGC	3 cut(s)	133, 171, 490
BstKTI	GATC	6 cut(s)	9, 45, 141, 177, 504, 567
BstMAI	GTCTC	3 cut(s)	319, 428, 651
BstMBI	GATC	6 cut(s)	6, 42, 138, 174, 501, 564
BstMWI	GCNNNNNNNGC	9 cut(s)	153, 177, 224, 243, 258, 339, 683, 745, 754
BstNI	CCWGG	2 cut(s)	104, 532
BstSCI	CCNGG	7 cut(s)	15, 102, 203, 227, 228, 237, 530
BstSLI	GKGCMC	1 cut(s)	370
BstUI	CGCG	4 cut(s)	131, 169, 333, 588
BstV1I	GCAGC	2 cut(s)	498, 501
BstV2I	GAAGAC	1 cut(s)	464
BstX2I	RGATCY	1 cut(s)	138
BstXI	CCANNNNNNTGG	1 cut(s)	538
BstYI	RGATCY	1 cut(s)	138
BsuRI	GGCC	7 cut(s)	107, 203, 218, 284, 342, 368, 677
BtgI	CCRYGG	2 cut(s)	331, 354
Cac8I	GCNNGC	5 cut(s)	254, 278, 282, 559, 700
CfoI	GCGC	3 cut(s)	133, 171, 490
Cfr13I	GGNCC	8 cut(s)	282, 340, 366, 367, 496, 523, 601, 675
Cfr42I	CCGCGG	1 cut(s)	334
Cfr9I	CCCGGG	1 cut(s)	228
CseI	GACGC	3 cut(s)	137, 415, 469
Csp6I	GTAC	2 cut(s)	310, 544
CviAII	CATG	1 cut(s)	575
CviQI	GTAC	2 cut(s)	310, 544
DpnI	GATC	6 cut(s)	8, 44, 140, 176, 503, 566
DpnII	GATC	6 cut(s)	6, 42, 138, 174, 501, 564
Eam1104I	CTCTTC	1 cut(s)	416
EarI	CTCTTC	1 cut(s)	416
EciI	GGCGGA	3 cut(s)	131, 627, 726
Eco130I	CCWWGG	1 cut(s)	370
Eco24I	GRGCYC	3 cut(s)	370, 628, 733
Eco47I	GGWCC	3 cut(s)	496, 523, 601
Eco72I	CACGTG	1 cut(s)	61
Eco88I	CYCGRG	2 cut(s)	228, 320
EcoO109I	RGGNCCY	3 cut(s)	367, 523, 601
EcoRII	CCWGG	2 cut(s)	102, 530
EcoT14I	CCWWGG	1 cut(s)	370
EcoT38I	GRGCYC	3 cut(s)	370, 628, 733
ErhI	CCWWGG	1 cut(s)	370
Esp3I	CGTCTC	2 cut(s)	319, 651
FaeI	CATG	1 cut(s)	578
FaiI	YATR	1 cut(s)	576
FalI	AAGNNNNNCTT	2 cut(s)	245, 277
FaqI	GGGAC	2 cut(s)	415, 614
FatI	CATG	1 cut(s)	574
FauI	CCCGC	2 cut(s)	273, 581
Fnu4HI	GCNGC	8 cut(s)	145, 247, 250, 334, 512, 515, 678, 749
FriOI	GRGCYC	3 cut(s)	370, 628, 733
Fsp4HI	GCNGC	8 cut(s)	145, 247, 250, 334, 512, 515, 678, 749
FspBI	CTAG	1 cut(s)	371
GlaI	GCGC	3 cut(s)	132, 170, 489
GluI	GCNGC	8 cut(s)	145, 247, 250, 334, 512, 515, 678, 749
HaeII	RGCGCY	1 cut(s)	491
HaeIII	GGCC	7 cut(s)	107, 203, 218, 284, 342, 368, 677
HapII	CCGG	9 cut(s)	16, 134, 204, 229, 239, 427, 442, 464, 758
HgaI	GACGC	3 cut(s)	137, 415, 469
HhaI	GCGC	3 cut(s)	133, 171, 490
Hin1I	GRCGYC	2 cut(s)	407, 461
Hin1II	CATG	1 cut(s)	578
Hin6I	GCGC	3 cut(s)	131, 169, 488
HinP1I	GCGC	3 cut(s)	131, 169, 488
HinfI	GANTC	1 cut(s)	376
HpaII	CCGG	9 cut(s)	16, 134, 204, 229, 239, 427, 442, 464, 758
HphI	GGTGA	2 cut(s)	373, 604
Hpy166II	GTNNAC	2 cut(s)	124, 358
Hpy188I	TCNGA	1 cut(s)	268
Hpy188III	TCNNGA	2 cut(s)	87, 442
Hpy8I	GTNNAC	2 cut(s)	124, 358
Hpy99I	CGWCG	5 cut(s)	122, 131, 299, 409, 757
HpyAV	CCTTC	2 cut(s)	208, 424
HpyCH4III	ACNGT	2 cut(s)	51, 118
HpyCH4IV	ACGT	6 cut(s)	36, 60, 312, 447, 546, 660
HpyCH4V	TGCA	1 cut(s)	517
HpyF10VI	GCNNNNNNNGC	9 cut(s)	153, 177, 224, 243, 258, 339, 683, 745, 754
HpySE526I	ACGT	6 cut(s)	36, 60, 312, 447, 546, 660
Hsp92I	GRCGYC	2 cut(s)	407, 461
Hsp92II	CATG	1 cut(s)	578
HspAI	GCGC	3 cut(s)	131, 169, 488
Kpn2I	TCCGGA	1 cut(s)	441
KspI	CCGCGG	1 cut(s)	334
Kzo9I	GATC	6 cut(s)	6, 42, 138, 174, 501, 564
LguI	GCTCTTC	1 cut(s)	416
LmnI	GCTCC	3 cut(s)	554, 631, 736
Lsp1109I	GCAGC	2 cut(s)	498, 501
MaeI	CTAG	1 cut(s)	371
MaeII	ACGT	6 cut(s)	36, 60, 312, 447, 546, 660
MaeIII	GTNAC	5 cut(s)	56, 61, 618, 661, 723
MalI	GATC	6 cut(s)	8, 44, 140, 176, 503, 566
MbiI	CCGCTC	1 cut(s)	280
MboI	GATC	6 cut(s)	6, 42, 138, 174, 501, 564
MboII	GAAGA	3 cut(s)	223, 433, 469
MflI	RGATCY	1 cut(s)	138
MhlI	GDGCHC	3 cut(s)	370, 628, 733
MmeI	TCCRAC	2 cut(s)	70, 291
MroI	TCCGGA	1 cut(s)	441
MseI	TTAA	2 cut(s)	111, 414
MspA1I	CMGCKG	1 cut(s)	333
MspI	CCGG	9 cut(s)	16, 134, 204, 229, 239, 427, 442, 464, 758
MspR9I	CCNGG	7 cut(s)	17, 104, 205, 229, 230, 239, 532
MvaI	CCWGG	2 cut(s)	104, 532
MvnI	CGCG	4 cut(s)	131, 169, 333, 588
MwoI	GCNNNNNNNGC	9 cut(s)	153, 177, 224, 243, 258, 339, 683, 745, 754
NciI	CCSGG	5 cut(s)	17, 205, 229, 230, 239
NdeII	GATC	6 cut(s)	6, 42, 138, 174, 501, 564
NlaIII	CATG	1 cut(s)	578
NlaIV	GGNNCC	6 cut(s)	161, 368, 525, 602, 627, 732
NmeAIII	GCCGAG	3 cut(s)	282, 662, 666
NmuCI	GTSAC	3 cut(s)	56, 61, 618
PciSI	GCTCTTC	1 cut(s)	416
PcsI	WCGNNNNNNNCGW	3 cut(s)	318, 333, 351
PfeI	GAWTC	1 cut(s)	376
PkrI	GCNGC	8 cut(s)	146, 248, 251, 335, 513, 516, 679, 750
PmaCI	CACGTG	1 cut(s)	61
PmlI	CACGTG	1 cut(s)	61
Ppu21I	YACGTR	2 cut(s)	61, 547
PpuMI	RGGWCCY	2 cut(s)	523, 601
Psp5II	RGGWCCY	2 cut(s)	523, 601
Psp6I	CCWGG	2 cut(s)	102, 530
PspCI	CACGTG	1 cut(s)	61
PspGI	CCWGG	2 cut(s)	102, 530
PspN4I	GGNNCC	6 cut(s)	161, 368, 525, 602, 627, 732
PspOMI	GGGCCC	1 cut(s)	366
PspPI	GGNCC	8 cut(s)	282, 340, 366, 367, 496, 523, 601, 675
PspPPI	RGGWCCY	2 cut(s)	523, 601
PsuI	RGATCY	1 cut(s)	138
RsaI	GTAC	2 cut(s)	311, 545
RsaNI	GTAC	2 cut(s)	310, 544
SacII	CCGCGG	1 cut(s)	334
SapI	GCTCTTC	1 cut(s)	416
SaqAI	TTAA	2 cut(s)	111, 414
SatI	GCNGC	8 cut(s)	145, 247, 250, 334, 512, 515, 678, 749
Sau3AI	GATC	6 cut(s)	6, 42, 138, 174, 501, 564
Sau96I	GGNCC	8 cut(s)	282, 340, 366, 367, 496, 523, 601, 675
ScrFI	CCNGG	7 cut(s)	17, 104, 205, 229, 230, 239, 532
SduI	GDGCHC	3 cut(s)	370, 628, 733
Sfr303I	CCGCGG	1 cut(s)	334
SgrBI	CCGCGG	1 cut(s)	334
SinI	GGWCC	3 cut(s)	496, 523, 601
SmaI	CCCGGG	1 cut(s)	230
SspMI	CTAG	1 cut(s)	371
StyD4I	CCNGG	7 cut(s)	15, 102, 203, 227, 228, 237, 530
StyI	CCWWGG	1 cut(s)	370
TaaI	ACNGT	2 cut(s)	51, 118
TaiI	ACGT	6 cut(s)	39, 63, 315, 450, 549, 663
TaqI	TCGA	2 cut(s)	78, 504
TauI	GCSGC	6 cut(s)	147, 249, 252, 336, 680, 751
TfiI	GAWTC	1 cut(s)	376
Tru1I	TTAA	2 cut(s)	111, 414
Tru9I	TTAA	2 cut(s)	111, 414
TseFI	GTSAC	3 cut(s)	56, 61, 618
TseI	GCWGC	2 cut(s)	511, 514
Tsp45I	GTSAC	3 cut(s)	56, 61, 618
TspGWI	ACGGA	7 cut(s)	86, 496, 509, 618, 626, 669, 680
TspMI	CCCGGG	1 cut(s)	228
VpaK11BI	GGWCC	3 cut(s)	496, 523, 601
XcmI	CCANNNNNNNNNTGG	1 cut(s)	535
XmaI	CCCGGG	1 cut(s)	228
XmaJI	CCTAGG	1 cut(s)	370
XspI	CTAG	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.