Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0010942

Physical Location & Seq

Genomic Coordinates Forward (+)

62630898 .. 62631431

Gene Structure 534 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0453000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTCAGGCCGTGGTAAGGGAGGCAAGGGATTGGGCAAAGGAGGAGCCAAGCGTCACAGGAAGGTTCTTCGGGATAACATCCAGGGCATCACCAAGCCTGCCATTCGCCGTTTGGCTCGCAGAGGCGGCGTCAAGCGTATCTCCGGTCTCATCTACGAAGAGACCAGAGGTGTCCTCAAGATCTTTCTCGAGAACGTCATCCGTGACGCCGTCACTTACACTGAGCACGCGAGGAGGAAGACCGTCACCGCCATGGATGTCGTCTATGCTCTCAAGAGGCAAGGAAGGACTCTTTACGGATTTGGGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009611 GO:0009791 GO:0009888 GO:0009908 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0035556 GO:0035670 GO:0036211 GO:0036290 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051302 GO:0051716 GO:0051782 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0080060 GO:0090567 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

103

Amino Acids

11.41

Weight (kDa)

11.48

Isoelectric Point (pI)

45.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CENP-T_C	PF15511	44 - 96	3.4e-08	Centromere kinetochore component CENP-T histone fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010942)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51170 AT3G20830
fragaria_vesca	FvH4_3g43220
malus_domestica	MD03G1023600.v1.1 MD11G1028700.v1.1
prunus_persica	Prupe.6G022800_v2.0.a1
pyrus_communis	pycom03g02020 pycom08g08880 pycom11g02220 pycom13g22320
rosa_chinensis	RchiOBHm_Chr5g0077231
rosa_laevigata	RLG00000036675
rosa_multiflora	Rmu_sc0005576.1_g000006
rosa_roxburghii	Rroxscaffold_1G00004780
rosa_rugosa	Rorug05G0453000
rosa_samantha	Rh5AG508000 Rh5BG529400 Rh5CG553800 Rh5DG541700
rosa_wichuraiana	Rw5G046950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	230
AciI	CCGC	2 cut(s)	126, 249
AcyI	GRCGYC	2 cut(s)	129, 207
AfiI	CCNNNNNNNGG	1 cut(s)	16
AjnI	CCWGG	1 cut(s)	81
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	2 cut(s)	152, 155
Ama87I	CYCGRG	1 cut(s)	188
AoxI	GGCC	1 cut(s)	7
AsuHPI	GGTGA	2 cut(s)	82, 238
AvaI	CYCGRG	1 cut(s)	188
BbsI	GAAGAC	1 cut(s)	245
Bbv12I	GWGCWC	1 cut(s)	228
BceAI	ACGGC	2 cut(s)	93, 194
BciT130I	CCWGG	1 cut(s)	83
BcoDI	GTCTC	2 cut(s)	152, 155
BglII	AGATCT	1 cut(s)	180
BisI	GCNGC	1 cut(s)	127
BlsI	GCNGC	1 cut(s)	128
Bme1390I	CCNGG	1 cut(s)	83
BmeT110I	CYCGRG	1 cut(s)	188
BmiI	GGNNCC	1 cut(s)	46
BmrFI	CCNGG	1 cut(s)	83
BmsI	GCATC	1 cut(s)	96
BpiI	GAAGAC	1 cut(s)	245
BplI	GAGNNNNNCTC	2 cut(s)	159, 191
BpuEI	CTTGAG	2 cut(s)	161, 257
BsaHI	GRCGYC	2 cut(s)	129, 207
BsaI	GGTCTC	2 cut(s)	152, 155
BsaJI	CCNNGG	3 cut(s)	10, 82, 252
BsaWI	WCCGGW	1 cut(s)	143
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
BseBI	CCWGG	1 cut(s)	83
BseDI	CCNNGG	3 cut(s)	10, 82, 252
BseGI	GGATG	3 cut(s)	78, 198, 262
BseLI	CCNNNNNNNGG	1 cut(s)	16
BseMII	CTCAG	1 cut(s)	213
BseRI	GAGGAG	2 cut(s)	57, 247
Bsh1236I	CGCG	1 cut(s)	230
BshFI	GGCC	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	228
BsiHKCI	CYCGRG	1 cut(s)	188
BsiSI	CCGG	1 cut(s)	144
BslI	CCNNNNNNNGG	1 cut(s)	16
BsmAI	GTCTC	2 cut(s)	152, 155
BsnI	GGCC	1 cut(s)	9
Bso31I	GGTCTC	2 cut(s)	152, 155
BsoBI	CYCGRG	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp143I	GATC	1 cut(s)	180
Bsp19I	CCATGG	1 cut(s)	252
BspACI	CCGC	2 cut(s)	126, 249
BspANI	GGCC	1 cut(s)	9
BspCNI	CTCAG	1 cut(s)	214
BspFNI	CGCG	1 cut(s)	230
BspLI	GGNNCC	1 cut(s)	46
BspTNI	GGTCTC	2 cut(s)	152, 155
BssECI	CCNNGG	3 cut(s)	10, 82, 252
BssMI	GATC	1 cut(s)	180
BssNI	GRCGYC	2 cut(s)	129, 207
BssT1I	CCWWGG	1 cut(s)	252
Bst2UI	CCWGG	1 cut(s)	83
Bst4CI	ACNGT	1 cut(s)	244
Bst6I	CTCTTC	1 cut(s)	153
BstACI	GRCGYC	2 cut(s)	129, 207
BstC8I	GCNNGC	3 cut(s)	99, 118, 228
BstDEI	CTNAG	1 cut(s)	222
BstDSI	CCRYGG	2 cut(s)	10, 252
BstF5I	GGATG	3 cut(s)	78, 198, 262
BstFNI	CGCG	1 cut(s)	230
BstKTI	GATC	1 cut(s)	183
BstMAI	GTCTC	2 cut(s)	152, 155
BstMBI	GATC	1 cut(s)	180
BstMWI	GCNNNNNNNGC	1 cut(s)	126
BstNI	CCWGG	1 cut(s)	83
BstSCI	CCNGG	1 cut(s)	81
BstUI	CGCG	1 cut(s)	230
BstV2I	GAAGAC	1 cut(s)	245
BstX2I	RGATCY	1 cut(s)	180
BstYI	RGATCY	1 cut(s)	180
BsuRI	GGCC	1 cut(s)	9
BtgI	CCRYGG	2 cut(s)	10, 252
BtsCI	GGATG	3 cut(s)	78, 198, 262
BtsIMutI	CAGTG	1 cut(s)	219
Cac8I	GCNNGC	3 cut(s)	99, 118, 228
CseI	GACGC	3 cut(s)	41, 118, 215
CviAII	CATG	1 cut(s)	253
CviJI	RGCY	4 cut(s)	9, 47, 97, 116
CviKI_1	RGCY	4 cut(s)	9, 47, 97, 116
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	1 cut(s)	182
DpnII	GATC	1 cut(s)	180
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Eco130I	CCWWGG	1 cut(s)	252
Eco31I	GGTCTC	2 cut(s)	152, 155
Eco88I	CYCGRG	1 cut(s)	188
EcoRII	CCWGG	1 cut(s)	81
EcoT14I	CCWWGG	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	1 cut(s)	256
FaiI	YATR	2 cut(s)	254, 267
FatI	CATG	1 cut(s)	252
Fnu4HI	GCNGC	1 cut(s)	127
FokI	GGATG	3 cut(s)	65, 185, 269
Fsp4HI	GCNGC	1 cut(s)	127
GluI	GCNGC	1 cut(s)	127
HaeIII	GGCC	1 cut(s)	9
HapII	CCGG	1 cut(s)	144
HgaI	GACGC	3 cut(s)	41, 118, 215
Hin1I	GRCGYC	2 cut(s)	129, 207
Hin1II	CATG	1 cut(s)	256
HinfI	GANTC	1 cut(s)	289
HpaII	CCGG	1 cut(s)	144
HphI	GGTGA	2 cut(s)	82, 238
Hpy188III	TCNNGA	5 cut(s)	71, 178, 188, 190, 274
HpyAV	CCTTC	2 cut(s)	55, 279
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4IV	ACGT	1 cut(s)	195
HpyF10VI	GCNNNNNNNGC	1 cut(s)	126
HpyF3I	CTNAG	1 cut(s)	222
HpySE526I	ACGT	1 cut(s)	195
Hsp92I	GRCGYC	2 cut(s)	129, 207
Hsp92II	CATG	1 cut(s)	256
Kzo9I	GATC	1 cut(s)	180
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	6 cut(s)	43, 68, 95, 111, 157, 178
LweI	GCATC	1 cut(s)	96
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	4 cut(s)	53, 203, 211, 244
MalI	GATC	1 cut(s)	182
MboI	GATC	1 cut(s)	180
MboII	GAAGA	3 cut(s)	59, 170, 250
MflI	RGATCY	1 cut(s)	180
MhlI	GDGCHC	1 cut(s)	228
MlyI	GAGTC	1 cut(s)	283
MnlI	CCTC	8 cut(s)	14, 35, 116, 161, 185, 225, 228, 270
MseI	TTAA	1 cut(s)	310
MslI	CAYNNNNRTG	1 cut(s)	251
MspI	CCGG	1 cut(s)	144
MspR9I	CCNGG	1 cut(s)	83
MvaI	CCWGG	1 cut(s)	83
MvnI	CGCG	1 cut(s)	230
MwoI	GCNNNNNNNGC	1 cut(s)	126
NcoI	CCATGG	1 cut(s)	252
NdeII	GATC	1 cut(s)	180
NlaIII	CATG	1 cut(s)	256
NlaIV	GGNNCC	1 cut(s)	46
NmuCI	GTSAC	4 cut(s)	53, 203, 211, 244
PaeR7I	CTCGAG	1 cut(s)	188
PflFI	GACNNNGTC	1 cut(s)	209
PkrI	GCNGC	1 cut(s)	128
PleI	GAGTC	1 cut(s)	283
PpsI	GAGTC	1 cut(s)	283
Psp6I	CCWGG	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	81
PspN4I	GGNNCC	1 cut(s)	46
PsuI	RGATCY	1 cut(s)	180
PsyI	GACNNNGTC	1 cut(s)	209
RseI	CAYNNNNRTG	1 cut(s)	251
SaqAI	TTAA	1 cut(s)	310
SatI	GCNGC	1 cut(s)	127
Sau3AI	GATC	1 cut(s)	180
SchI	GAGTC	1 cut(s)	283
ScrFI	CCNGG	1 cut(s)	83
SduI	GDGCHC	1 cut(s)	228
SetI	ASST	3 cut(s)	66, 172, 198
SfaNI	GCATC	1 cut(s)	96
Sfr274I	CTCGAG	1 cut(s)	188
SlaI	CTCGAG	1 cut(s)	188
SmiMI	CAYNNNNRTG	1 cut(s)	251
SmlI	CTYRAG	3 cut(s)	176, 188, 272
SmoI	CTYRAG	3 cut(s)	176, 188, 272
SsiI	CCGC	2 cut(s)	126, 249
StyD4I	CCNGG	1 cut(s)	81
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	1 cut(s)	244
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	1 cut(s)	189
TauI	GCSGC	1 cut(s)	129
Tru1I	TTAA	1 cut(s)	310
Tru9I	TTAA	1 cut(s)	310
TscAI	CASTG	1 cut(s)	226
TseFI	GTSAC	4 cut(s)	53, 203, 211, 244
Tsp45I	GTSAC	4 cut(s)	53, 203, 211, 244
TspGWI	ACGGA	2 cut(s)	191, 312
TspRI	CASTG	1 cut(s)	226
Tth111I	GACNNNGTC	1 cut(s)	209
XcmI	CCANNNNNNNNNTGG	1 cut(s)	109
XhoI	CTCGAG	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.