Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015125

Physical Location & Seq

Genomic Coordinates Forward (+)

19152508 .. 19154051

Gene Structure 1544 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G51650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGGCATCGAATGCGGCGGTTCCGTTCTGGAGAGCGGCGGGGATGACATATATATCGTATTCAAACATCTGTGCGAATATCGTGAGGAACTGTCTCAAGGAGCCACACAAAGCTGAAGCTCTTACTCGCGAGAAGGTTCACTTCTCTCTCTCCAAATGGGCTGATGGAAAGCCCCAGAAACCTGTTTTGCGGTCAGACACACCTGAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005753 GO:0016020 GO:0016469 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045259 GO:0098796 GO:0098798 GO:0098800

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016

Pfam Domains

Protein Families

ATP-synt_Eps

Protein Analysis

70

Amino Acids

7.83

Weight (kDa)

9.39

Isoelectric Point (pI)

42.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_Eps	PF04627	9 - 56	7.6e-24	Mitochondrial ATP synthase epsilon chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51650
fragaria_vesca	FvH4_6g37330 FvH4_6g37330
malus_domestica	MD09G1158500.v1.1
prunus_persica	Prupe.3G167500_v2.0.a1 Prupe.3G167500_v2.0.a1
pyrus_communis	pycom09g07710 pycom17g13760
rosa_chinensis	RchiOBHm_Chr2g0150171
rosa_multiflora	Rmu_sc0015510.1_g000002 Rmu_ssc0000020.1_g000011
rosa_roxburghii	Rroxscaffold_2G00097380
rosa_rugosa	Rorug02G0419500
rosa_samantha	Rh2AG478600 Rh2CG464800
rosa_wichuraiana	Rw2G039060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	35
AccII	CGCG	1 cut(s)	129
AciI	CCGC	5 cut(s)	14, 17, 35, 38, 190
AcuI	CTGAAG	1 cut(s)	135
AgsI	TTSAA	1 cut(s)	63
AluBI	AGCT	2 cut(s)	113, 119
AluI	AGCT	2 cut(s)	113, 119
Alw26I	GTCTC	1 cut(s)	98
BccI	CCATC	1 cut(s)	158
BcoDI	GTCTC	1 cut(s)	98
BisI	GCNGC	2 cut(s)	15, 36
BlsI	GCNGC	2 cut(s)	16, 37
BmiI	GGNNCC	2 cut(s)	21, 102
BmsI	GCATC	1 cut(s)	14
BpmI	CTGGAG	1 cut(s)	49
BpuEI	CTTGAG	1 cut(s)	80
BseGI	GGATG	1 cut(s)	48
Bsh1236I	CGCG	1 cut(s)	129
BsmAI	GTCTC	1 cut(s)	98
BsmI	GAATGC	1 cut(s)	16
Bsp68I	TCGCGA	1 cut(s)	129
BspACI	CCGC	5 cut(s)	14, 17, 35, 38, 190
BspFNI	CGCG	1 cut(s)	129
BspLI	GGNNCC	2 cut(s)	21, 102
BsrBI	CCGCTC	1 cut(s)	35
Bst4CI	ACNGT	1 cut(s)	92
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstF5I	GGATG	1 cut(s)	48
BstFNI	CGCG	1 cut(s)	129
BstMAI	GTCTC	1 cut(s)	98
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstUI	CGCG	1 cut(s)	129
BtsCI	GGATG	1 cut(s)	48
BtuMI	TCGCGA	1 cut(s)	129
CviJI	RGCY	5 cut(s)	103, 113, 119, 161, 172
CviKI_1	RGCY	5 cut(s)	103, 113, 119, 161, 172
Eco57I	CTGAAG	1 cut(s)	135
FaiI	YATR	3 cut(s)	49, 51, 53
FalI	AAGNNNNNCTT	2 cut(s)	125, 157
FauI	CCCGC	1 cut(s)	31
Fnu4HI	GCNGC	2 cut(s)	15, 36
FokI	GGATG	1 cut(s)	55
Fsp4HI	GCNGC	2 cut(s)	15, 36
GluI	GCNGC	2 cut(s)	15, 36
GsuI	CTGGAG	1 cut(s)	49
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	1 cut(s)	196
Hpy188III	TCNNGA	3 cut(s)	28, 82, 128
Hpy8I	GTNNAC	1 cut(s)	139
HpyAV	CCTTC	1 cut(s)	127
HpyCH4III	ACNGT	1 cut(s)	92
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
LmnI	GCTCC	1 cut(s)	100
LpnPI	CCDG	3 cut(s)	13, 188, 195
LweI	GCATC	1 cut(s)	14
MbiI	CCGCTC	1 cut(s)	35
MnlI	CCTC	1 cut(s)	78
Mva1269I	GAATGC	1 cut(s)	16
MvnI	CGCG	1 cut(s)	129
MwoI	GCNNNNNNNGC	1 cut(s)	11
NlaIV	GGNNCC	2 cut(s)	21, 102
NruI	TCGCGA	1 cut(s)	129
PctI	GAATGC	1 cut(s)	16
PkrI	GCNGC	2 cut(s)	16, 37
PspN4I	GGNNCC	2 cut(s)	21, 102
RruI	TCGCGA	1 cut(s)	129
SatI	GCNGC	2 cut(s)	15, 36
SetI	ASST	5 cut(s)	115, 121, 138, 184, 205
SfaNI	GCATC	1 cut(s)	14
SgeI	CNNG	9 cut(s)	40, 51, 94, 109, 138, 140, 142, 187, 194
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
SsiI	CCGC	5 cut(s)	14, 17, 35, 38, 190
TaaI	ACNGT	1 cut(s)	92
TaqI	TCGA	1 cut(s)	8
TauI	GCSGC	2 cut(s)	17, 38
TspGWI	ACGGA	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.