Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0015125

Physical Location & Seq

Genomic Coordinates Reverse (-)

53846434 .. 53846673

Gene Structure 240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0419500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGTCTGTCAAGAAGAGTCTTTCTCTTGACCATGGCAGTGCCGGGAAGGGCGTTGCTGTTACAGCAAAGCGCGGCCGATATGATCGTTGTTTTTCTTTCATGGAGGTTTCATTAGAACCAGGAAAGTCTCTCAAGGAAATGGATTCAGAGAAGTTGAAGGCTGGGATCAAGAGATGGGCTAAGGCTGTTGCCGCCTATGCCCGCCAGGTCAGTGGACGGTTTGGAAACTCTCGTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005753 GO:0016020 GO:0016469 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045259 GO:0098796 GO:0098798 GO:0098800

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016

Pfam Domains

Protein Families

ATP-synt_Eps

Protein Analysis

79

Amino Acids

8.58

Weight (kDa)

10.29

Isoelectric Point (pI)

29.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51650
fragaria_vesca	FvH4_6g37330 FvH4_6g37330
malus_domestica	MD09G1158500.v1.1
prunus_persica	Prupe.3G167500_v2.0.a1 Prupe.3G167500_v2.0.a1
pyrus_communis	pycom09g07710 pycom17g13760
rosa_chinensis	RchiOBHm_Chr2g0150171
rosa_multiflora	Rmu_sc0015510.1_g000002 Rmu_ssc0000020.1_g000011
rosa_roxburghii	Rroxscaffold_2G00097380
rosa_rugosa	Rorug02G0419500
rosa_samantha	Rh2AG478600 Rh2CG464800
rosa_wichuraiana	Rw2G039060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	72
AciI	CCGC	3 cut(s)	72, 192, 202
AclWI	GGATC	1 cut(s)	173
AcoI	YGGCCR	1 cut(s)	73
AgsI	TTSAA	1 cut(s)	157
AjnI	CCWGG	2 cut(s)	118, 204
Alw26I	GTCTC	1 cut(s)	132
AlwI	GGATC	1 cut(s)	173
AoxI	GGCC	1 cut(s)	73
AspLEI	GCGC	1 cut(s)	72
AsuC2I	CCSGG	1 cut(s)	43
BauI	CACGAG	1 cut(s)	231
BccI	CCATC	1 cut(s)	168
BciT130I	CCWGG	2 cut(s)	120, 206
BcnI	CCSGG	1 cut(s)	43
BcoDI	GTCTC	1 cut(s)	132
BisI	GCNGC	2 cut(s)	73, 192
BlsI	GCNGC	2 cut(s)	74, 193
Bme1390I	CCNGG	3 cut(s)	43, 120, 206
BmrFI	CCNGG	3 cut(s)	43, 120, 206
BplI	GAGNNNNNCTC	2 cut(s)	7, 39
Bpu10I	CCTNAGC	1 cut(s)	180
BpuEI	CTTGAG	1 cut(s)	116
BpuMI	CCSGG	1 cut(s)	43
BsaJI	CCNNGG	1 cut(s)	31
BseBI	CCWGG	2 cut(s)	120, 206
BseDI	CCNNGG	1 cut(s)	31
BseX3I	CGGCCG	1 cut(s)	73
BseYI	CCCAGC	1 cut(s)	161
Bsh1236I	CGCG	1 cut(s)	72
Bsh1285I	CGRYCG	1 cut(s)	76
BshFI	GGCC	1 cut(s)	75
BsiEI	CGRYCG	1 cut(s)	76
BsiSI	CCGG	1 cut(s)	42
BsmAI	GTCTC	1 cut(s)	132
BsnI	GGCC	1 cut(s)	75
Bsp143I	GATC	2 cut(s)	82, 165
Bsp19I	CCATGG	1 cut(s)	31
BspACI	CCGC	3 cut(s)	72, 192, 202
BspANI	GGCC	1 cut(s)	75
BspFNI	CGCG	1 cut(s)	72
BspPI	GGATC	1 cut(s)	173
BssECI	CCNNGG	1 cut(s)	31
BssMI	GATC	2 cut(s)	82, 165
BssSI	CACGAG	1 cut(s)	231
BssT1I	CCWWGG	1 cut(s)	31
Bst2BI	CACGAG	1 cut(s)	231
Bst2UI	CCWGG	2 cut(s)	120, 206
Bst4CI	ACNGT	1 cut(s)	219
Bst6I	CTCTTC	1 cut(s)	8
BstC8I	GCNNGC	1 cut(s)	202
BstDEI	CTNAG	1 cut(s)	180
BstDSI	CCRYGG	1 cut(s)	31
BstFNI	CGCG	1 cut(s)	72
BstHHI	GCGC	1 cut(s)	72
BstKTI	GATC	2 cut(s)	85, 168
BstMAI	GTCTC	1 cut(s)	132
BstMBI	GATC	2 cut(s)	82, 165
BstMCI	CGRYCG	1 cut(s)	76
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 191, 197
BstNI	CCWGG	2 cut(s)	120, 206
BstSCI	CCNGG	3 cut(s)	41, 118, 204
BstUI	CGCG	1 cut(s)	72
BstXI	CCANNNNNNTGG	1 cut(s)	212
BstZI	CGGCCG	1 cut(s)	73
BsuRI	GGCC	1 cut(s)	75
BtgI	CCRYGG	1 cut(s)	31
BtsI	GCAGTG	1 cut(s)	43
BtsIMutI	CAGTG	2 cut(s)	43, 217
Cac8I	GCNNGC	1 cut(s)	202
CfoI	GCGC	1 cut(s)	72
CviAII	CATG	2 cut(s)	32, 100
CviJI	RGCY	5 cut(s)	75, 161, 179, 185, 237
CviKI_1	RGCY	5 cut(s)	75, 161, 179, 185, 237
DdeI	CTNAG	1 cut(s)	180
DpnI	GATC	2 cut(s)	84, 167
DpnII	GATC	2 cut(s)	82, 165
EaeI	YGGCCR	1 cut(s)	73
EagI	CGGCCG	1 cut(s)	73
Eam1104I	CTCTTC	1 cut(s)	8
EarI	CTCTTC	1 cut(s)	8
EclXI	CGGCCG	1 cut(s)	73
Eco130I	CCWWGG	1 cut(s)	31
Eco52I	CGGCCG	1 cut(s)	73
EcoRII	CCWGG	2 cut(s)	118, 204
EcoT14I	CCWWGG	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	31
FaeI	CATG	2 cut(s)	35, 103
FaiI	YATR	4 cut(s)	33, 81, 101, 198
FatI	CATG	2 cut(s)	31, 99
FauI	CCCGC	1 cut(s)	209
Fnu4HI	GCNGC	2 cut(s)	73, 192
Fsp4HI	GCNGC	2 cut(s)	73, 192
GlaI	GCGC	1 cut(s)	71
GluI	GCNGC	2 cut(s)	73, 192
GsaI	CCCAGC	1 cut(s)	165
HaeIII	GGCC	1 cut(s)	75
HapII	CCGG	1 cut(s)	42
HhaI	GCGC	1 cut(s)	72
Hin1II	CATG	2 cut(s)	35, 103
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HinfI	GANTC	2 cut(s)	16, 143
HpaII	CCGG	1 cut(s)	42
Hpy166II	GTNNAC	1 cut(s)	215
Hpy188I	TCNGA	1 cut(s)	148
Hpy188III	TCNNGA	3 cut(s)	10, 26, 169
Hpy8I	GTNNAC	1 cut(s)	215
HpyAV	CCTTC	2 cut(s)	40, 151
HpyCH4III	ACNGT	1 cut(s)	219
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 191, 197
HpyF3I	CTNAG	1 cut(s)	180
Hsp92II	CATG	2 cut(s)	35, 103
HspAI	GCGC	1 cut(s)	70
Kzo9I	GATC	2 cut(s)	82, 165
LpnPI	CCDG	6 cut(s)	55, 105, 132, 147, 191, 218
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	2 cut(s)	84, 167
MboI	GATC	2 cut(s)	82, 165
MboII	GAAGA	1 cut(s)	25
MlyI	GAGTC	1 cut(s)	25
MnlI	CCTC	1 cut(s)	97
MslI	CAYNNNNRTG	1 cut(s)	36
MspI	CCGG	1 cut(s)	42
MspR9I	CCNGG	3 cut(s)	43, 120, 206
MvaI	CCWGG	2 cut(s)	120, 206
MvnI	CGCG	1 cut(s)	72
MwoI	GCNNNNNNNGC	3 cut(s)	62, 191, 197
NciI	CCSGG	1 cut(s)	43
NcoI	CCATGG	1 cut(s)	31
NdeII	GATC	2 cut(s)	82, 165
NlaIII	CATG	2 cut(s)	35, 103
PfeI	GAWTC	1 cut(s)	143
PkrI	GCNGC	2 cut(s)	74, 193
PleI	GAGTC	1 cut(s)	24
PpsI	GAGTC	1 cut(s)	24
Psp6I	CCWGG	2 cut(s)	118, 204
PspFI	CCCAGC	1 cut(s)	161
PspGI	CCWGG	2 cut(s)	118, 204
RseI	CAYNNNNRTG	1 cut(s)	36
SatI	GCNGC	2 cut(s)	73, 192
Sau3AI	GATC	2 cut(s)	82, 165
SchI	GAGTC	1 cut(s)	25
ScrFI	CCNGG	3 cut(s)	43, 120, 206
SetI	ASST	2 cut(s)	108, 210
SmiMI	CAYNNNNRTG	1 cut(s)	36
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
SsiI	CCGC	3 cut(s)	72, 192, 202
StyD4I	CCNGG	3 cut(s)	41, 118, 204
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	1 cut(s)	219
TauI	GCSGC	2 cut(s)	75, 194
TfiI	GAWTC	1 cut(s)	143
TscAI	CASTG	2 cut(s)	43, 217
TspDTI	ATGAA	2 cut(s)	88, 99
TspRI	CASTG	2 cut(s)	43, 217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.