pycom17g13760

ATP synthase subunit epsilon

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0015125
Physical Location & Seq
Reverse (-)
11322049 .. 11324001
1953 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g13760.1

Sequence Viewer

Length: 267 bp
ATGGGGAGCTTCACATTGACCGACACACAGAGAGAGCGAAACCAGAGAAAGACAATGGCGTCGAACGCAGCGGCACCGTTTTGGCGCGCAGCCGGTATGACCTACATCACATACTCCAACATCTGTGCGAATCTGGTTCGTAATTGCCTCAAGGAGCCTTACAAGACCGAAGCCATTTCCCGCGAGAGGGTCCACTTCGCCGTCTCCAAGTGGGCGGAAGGCAAGCCTGAGAAGCCCACTGTTCGTACGGATACACCCGAAGCATGA

Protein Analysis

89

Amino Acids

10.0

Weight (kDa)

9.56

Isoelectric Point (pI)

23.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_Eps PF04627 27 - 74 5.8e-23 Mitochondrial ATP synthase epsilon chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51650
fragaria_vesca FvH4_6g37330 FvH4_6g37330
malus_domestica MD09G1158500.v1.1
prunus_persica Prupe.3G167500_v2.0.a1 Prupe.3G167500_v2.0.a1
pyrus_communis pycom09g07710 pycom17g13760
rosa_chinensis RchiOBHm_Chr2g0150171
rosa_multiflora Rmu_sc0015510.1_g000002 Rmu_ssc0000020.1_g000011
rosa_roxburghii Rroxscaffold_2G00097380
rosa_rugosa Rorug02G0419500
rosa_samantha Rh2AG478600 Rh2CG464800
rosa_wichuraiana Rw2G039060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 58
AccB1I GGYRCC 1 cut(s) 73
AccII CGCG 2 cut(s) 87, 183
AciI CCGC 3 cut(s) 71, 181, 215
AcyI GRCGYC 1 cut(s) 59
AfaI GTAC 1 cut(s) 247
AfiI CCNNNNNNNGG 2 cut(s) 186, 187
AluBI AGCT 1 cut(s) 9
AluI AGCT 1 cut(s) 9
Alw26I GTCTC 1 cut(s) 208
ApeKI GCWGC 2 cut(s) 68, 89
AspLEI GCGC 2 cut(s) 87, 89
AspS9I GGNCC 1 cut(s) 190
AvaII GGWCC 1 cut(s) 190
BanI GGYRCC 1 cut(s) 73
BbvI GCAGC 2 cut(s) 80, 101
BceAI ACGGC 1 cut(s) 185
BciVI GTATCC 1 cut(s) 244
BcoDI GTCTC 1 cut(s) 208
BfuI GTATCC 1 cut(s) 244
BisI GCNGC 3 cut(s) 69, 72, 90
BlsI GCNGC 3 cut(s) 70, 73, 91
Bme18I GGWCC 1 cut(s) 190
BmgT120I GGNCC 1 cut(s) 190
BmiI GGNNCC 3 cut(s) 75, 156, 191
BpuEI CTTGAG 1 cut(s) 134
BsaHI GRCGYC 1 cut(s) 59
Bsc4I CCNNNNNNNGG 2 cut(s) 186, 187
Bse118I RCCGGY 1 cut(s) 92
BseLI CCNNNNNNNGG 2 cut(s) 186, 187
BseMII CTCAG 1 cut(s) 219
BsePI GCGCGC 1 cut(s) 85
BseXI GCAGC 2 cut(s) 80, 101
Bsh1236I CGCG 2 cut(s) 87, 183
BshNI GGYRCC 1 cut(s) 73
BsiSI CCGG 1 cut(s) 93
BsiWI CGTACG 1 cut(s) 245
BslI CCNNNNNNNGG 2 cut(s) 186, 187
BsmAI GTCTC 1 cut(s) 208
BsmBI CGTCTC 1 cut(s) 208
BspACI CCGC 3 cut(s) 71, 181, 215
BspCNI CTCAG 1 cut(s) 220
BspFNI CGCG 2 cut(s) 87, 183
BspLI GGNNCC 3 cut(s) 75, 156, 191
BspT107I GGYRCC 1 cut(s) 73
BsrFI RCCGGY 1 cut(s) 92
BssAI RCCGGY 1 cut(s) 92
BssHII GCGCGC 1 cut(s) 85
BssNI GRCGYC 1 cut(s) 59
Bst4CI ACNGT 2 cut(s) 78, 241
BstACI GRCGYC 1 cut(s) 59
BstC8I GCNNGC 2 cut(s) 87, 224
BstDEI CTNAG 1 cut(s) 228
BstFNI CGCG 2 cut(s) 87, 183
BstHHI GCGC 2 cut(s) 87, 89
BstMAI GTCTC 1 cut(s) 208
BstMWI GCNNNNNNNGC 2 cut(s) 65, 232
BstUI CGCG 2 cut(s) 87, 183
BstV1I GCAGC 2 cut(s) 80, 101
BsuI GTATCC 1 cut(s) 244
BtsIMutI CAGTG 1 cut(s) 237
Cac8I GCNNGC 2 cut(s) 87, 224
CfoI GCGC 2 cut(s) 87, 89
Cfr10I RCCGGY 1 cut(s) 92
Cfr13I GGNCC 1 cut(s) 190
CseI GACGC 1 cut(s) 48
Csp6I GTAC 1 cut(s) 246
CviAII CATG 1 cut(s) 264
CviJI RGCY 6 cut(s) 9, 92, 157, 173, 226, 235
CviKI_1 RGCY 6 cut(s) 9, 92, 157, 173, 226, 235
CviQI GTAC 1 cut(s) 246
DdeI CTNAG 1 cut(s) 228
DrdI GACNNNNNNGTC 1 cut(s) 58
DseDI GACNNNNNNGTC 1 cut(s) 58
EciI GGCGGA 1 cut(s) 230
Eco47I GGWCC 1 cut(s) 190
Esp3I CGTCTC 1 cut(s) 208
FaeI CATG 1 cut(s) 267
FaiI YATR 3 cut(s) 98, 112, 265
FatI CATG 1 cut(s) 263
FauI CCCGC 1 cut(s) 188
Fnu4HI GCNGC 3 cut(s) 69, 72, 90
Fsp4HI GCNGC 3 cut(s) 69, 72, 90
GlaI GCGC 2 cut(s) 86, 88
GluI GCNGC 3 cut(s) 69, 72, 90
HapII CCGG 1 cut(s) 93
HgaI GACGC 1 cut(s) 48
HhaI GCGC 2 cut(s) 87, 89
Hin1I GRCGYC 1 cut(s) 59
Hin1II CATG 1 cut(s) 267
Hin6I GCGC 2 cut(s) 85, 87
HinP1I GCGC 2 cut(s) 85, 87
HinfI GANTC 1 cut(s) 130
HpaII CCGG 1 cut(s) 93
Hpy166II GTNNAC 1 cut(s) 193
Hpy8I GTNNAC 1 cut(s) 193
Hpy99I CGWCG 1 cut(s) 64
HpyAV CCTTC 1 cut(s) 212
HpyCH4III ACNGT 2 cut(s) 78, 241
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 232
HpyF3I CTNAG 1 cut(s) 228
Hsp92I GRCGYC 1 cut(s) 59
Hsp92II CATG 1 cut(s) 267
HspAI GCGC 2 cut(s) 85, 87
LmnI GCTCC 2 cut(s) 6, 154
LpnPI CCDG 4 cut(s) 56, 106, 119, 240
Lsp1109I GCAGC 2 cut(s) 80, 101
MluCI AATT 1 cut(s) 142
MmeI TCCRAC 1 cut(s) 141
MnlI CCTC 2 cut(s) 158, 180
MspA1I CMGCKG 1 cut(s) 71
MspI CCGG 1 cut(s) 93
MvnI CGCG 2 cut(s) 87, 183
MwoI GCNNNNNNNGC 2 cut(s) 65, 232
NlaIII CATG 1 cut(s) 267
NlaIV GGNNCC 3 cut(s) 75, 156, 191
PauI GCGCGC 1 cut(s) 85
PfeI GAWTC 1 cut(s) 130
Pfl23II CGTACG 1 cut(s) 245
PkrI GCNGC 3 cut(s) 70, 73, 91
PspLI CGTACG 1 cut(s) 245
PspN4I GGNNCC 3 cut(s) 75, 156, 191
PspPI GGNCC 1 cut(s) 190
PteI GCGCGC 1 cut(s) 85
RsaI GTAC 1 cut(s) 247
RsaNI GTAC 1 cut(s) 246
SatI GCNGC 3 cut(s) 69, 72, 90
Sau96I GGNCC 1 cut(s) 190
SetI ASST 2 cut(s) 11, 104
SinI GGWCC 1 cut(s) 190
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
Sse9I AATT 1 cut(s) 142
SsiI CCGC 3 cut(s) 71, 181, 215
TaaI ACNGT 2 cut(s) 78, 241
TaqI TCGA 1 cut(s) 62
TaqII GACCGA 2 cut(s) 35, 182
TasI AATT 1 cut(s) 142
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 1 cut(s) 130
TscAI CASTG 1 cut(s) 244
TseI GCWGC 2 cut(s) 68, 89
TspGWI ACGGA 1 cut(s) 263
TspRI CASTG 1 cut(s) 244
VpaK11BI GGWCC 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.