FvH4_6g37330

ATP synthase subunit epsilon, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015125
Physical Location & Seq
Forward (+)
29410204 .. 29413200
2997 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g37330.t2

Sequence Viewer

Length: 210 bp
ATGTCGGCGAACGCAGCGGTACCGTTTTGGCGAGCGGCGGGTATGACCTACATCACCTACTCGAACATCTGCGCCAATCTCGTCCGCAACTGCCTCAAGGAGCCTTACAAGACCGAGGCCCTCTCCCGCGAGAAGGTTCATTTCTCCGTCTCCAAGTGGGCCGACGGCAAGCCCGAGAAGCCCACTGTACGTACGGATCAACCAGAATGA

Protein Analysis

70

Amino Acids

7.8

Weight (kDa)

9.06

Isoelectric Point (pI)

37.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_Eps PF04627 9 - 56 1.3e-24 Mitochondrial ATP synthase epsilon chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51650
fragaria_vesca FvH4_6g37330 FvH4_6g37330
malus_domestica MD09G1158500.v1.1
prunus_persica Prupe.3G167500_v2.0.a1 Prupe.3G167500_v2.0.a1
pyrus_communis pycom09g07710 pycom17g13760
rosa_chinensis RchiOBHm_Chr2g0150171
rosa_multiflora Rmu_sc0015510.1_g000002 Rmu_ssc0000020.1_g000011
rosa_roxburghii Rroxscaffold_2G00097380
rosa_rugosa Rorug02G0419500
rosa_samantha Rh2AG478600 Rh2CG464800
rosa_wichuraiana Rw2G039060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 19
AccB1I GGYRCC 1 cut(s) 19
AccBSI CCGCTC 1 cut(s) 35
AccII CGCG 1 cut(s) 129
AciI CCGC 5 cut(s) 17, 35, 38, 85, 127
AclWI GGATC 1 cut(s) 204
AfaI GTAC 3 cut(s) 21, 189, 193
AfiI CCNNNNNNNGG 1 cut(s) 133
Alw26I GTCTC 1 cut(s) 154
AlwI GGATC 1 cut(s) 204
Ama87I CYCGRG 1 cut(s) 173
AoxI GGCC 2 cut(s) 117, 159
ApeKI GCWGC 1 cut(s) 14
Asp718I GGTACC 1 cut(s) 19
AspLEI GCGC 1 cut(s) 74
AspS9I GGNCC 2 cut(s) 118, 159
AsuHPI GGTGA 1 cut(s) 46
AvaI CYCGRG 1 cut(s) 173
BanI GGYRCC 1 cut(s) 19
BbvI GCAGC 1 cut(s) 26
BceAI ACGGC 1 cut(s) 181
BcoDI GTCTC 1 cut(s) 154
BisI GCNGC 2 cut(s) 15, 36
BlsI GCNGC 2 cut(s) 16, 37
BmeT110I CYCGRG 1 cut(s) 173
BmgT120I GGNCC 2 cut(s) 118, 159
BmiI GGNNCC 2 cut(s) 21, 102
BplI GAGNNNNNCTC 2 cut(s) 107, 139
BpuEI CTTGAG 1 cut(s) 80
BsaAI YACGTR 1 cut(s) 191
BsaJI CCNNGG 1 cut(s) 114
Bsc4I CCNNNNNNNGG 1 cut(s) 133
BseDI CCNNGG 1 cut(s) 114
BseLI CCNNNNNNNGG 1 cut(s) 133
BseXI GCAGC 1 cut(s) 26
Bsh1236I CGCG 1 cut(s) 129
BshFI GGCC 2 cut(s) 119, 161
BshNI GGYRCC 1 cut(s) 19
BsiHKCI CYCGRG 1 cut(s) 173
BsiWI CGTACG 1 cut(s) 191
BslI CCNNNNNNNGG 1 cut(s) 133
BsmAI GTCTC 1 cut(s) 154
BsmBI CGTCTC 1 cut(s) 154
BsnI GGCC 2 cut(s) 119, 161
BsoBI CYCGRG 1 cut(s) 173
Bsp143I GATC 1 cut(s) 196
BspACI CCGC 5 cut(s) 17, 35, 38, 85, 127
BspANI GGCC 2 cut(s) 119, 161
BspFNI CGCG 1 cut(s) 129
BspLI GGNNCC 2 cut(s) 21, 102
BspPI GGATC 1 cut(s) 204
BspT107I GGYRCC 1 cut(s) 19
BsrBI CCGCTC 1 cut(s) 35
BssECI CCNNGG 1 cut(s) 114
BssMI GATC 1 cut(s) 196
Bst4CI ACNGT 2 cut(s) 24, 187
BstBAI YACGTR 1 cut(s) 191
BstC8I GCNNGC 2 cut(s) 33, 170
BstFNI CGCG 1 cut(s) 129
BstHHI GCGC 1 cut(s) 74
BstKTI GATC 1 cut(s) 199
BstMAI GTCTC 1 cut(s) 154
BstMBI GATC 1 cut(s) 196
BstMWI GCNNNNNNNGC 2 cut(s) 14, 178
BstSNI TACGTA 1 cut(s) 191
BstUI CGCG 1 cut(s) 129
BstV1I GCAGC 1 cut(s) 26
BsuRI GGCC 2 cut(s) 119, 161
BtsIMutI CAGTG 1 cut(s) 183
Cac8I GCNNGC 2 cut(s) 33, 170
CfoI GCGC 1 cut(s) 74
Cfr13I GGNCC 2 cut(s) 118, 159
Csp6I GTAC 3 cut(s) 20, 188, 192
CviJI RGCY 5 cut(s) 103, 119, 161, 172, 181
CviKI_1 RGCY 5 cut(s) 103, 119, 161, 172, 181
CviQI GTAC 3 cut(s) 20, 188, 192
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
Eco105I TACGTA 1 cut(s) 191
Eco88I CYCGRG 1 cut(s) 173
EcoO109I RGGNCCY 1 cut(s) 118
Esp3I CGTCTC 1 cut(s) 154
FaiI YATR 1 cut(s) 44
FauI CCCGC 2 cut(s) 31, 134
Fnu4HI GCNGC 2 cut(s) 15, 36
Fsp4HI GCNGC 2 cut(s) 15, 36
GlaI GCGC 1 cut(s) 73
GluI GCNGC 2 cut(s) 15, 36
HaeIII GGCC 2 cut(s) 119, 161
HhaI GCGC 1 cut(s) 74
Hin6I GCGC 1 cut(s) 72
HinP1I GCGC 1 cut(s) 72
HphI GGTGA 1 cut(s) 46
Hpy99I CGWCG 1 cut(s) 167
HpyAV CCTTC 1 cut(s) 127
HpyCH4III ACNGT 2 cut(s) 24, 187
HpyCH4IV ACGT 1 cut(s) 190
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 178
HpySE526I ACGT 1 cut(s) 190
HspAI GCGC 1 cut(s) 72
KpnI GGTACC 1 cut(s) 23
Kzo9I GATC 1 cut(s) 196
LmnI GCTCC 1 cut(s) 100
Lsp1109I GCAGC 1 cut(s) 26
MaeII ACGT 1 cut(s) 190
MalI GATC 1 cut(s) 198
MbiI CCGCTC 1 cut(s) 35
MboI GATC 1 cut(s) 196
MnlI CCTC 3 cut(s) 104, 109, 131
MspA1I CMGCKG 1 cut(s) 17
MvnI CGCG 1 cut(s) 129
MwoI GCNNNNNNNGC 2 cut(s) 14, 178
NdeII GATC 1 cut(s) 196
NlaIV GGNNCC 2 cut(s) 21, 102
PcsI WCGNNNNNNNCGW 1 cut(s) 171
Pfl23II CGTACG 1 cut(s) 191
PkrI GCNGC 2 cut(s) 16, 37
Ppu21I YACGTR 1 cut(s) 191
PspLI CGTACG 1 cut(s) 191
PspN4I GGNNCC 2 cut(s) 21, 102
PspPI GGNCC 2 cut(s) 118, 159
RsaI GTAC 3 cut(s) 21, 189, 193
RsaNI GTAC 3 cut(s) 20, 188, 192
SatI GCNGC 2 cut(s) 15, 36
Sau3AI GATC 1 cut(s) 196
Sau96I GGNCC 2 cut(s) 118, 159
SetI ASST 4 cut(s) 50, 59, 138, 193
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
SnaBI TACGTA 1 cut(s) 191
SsiI CCGC 5 cut(s) 17, 35, 38, 85, 127
TaaI ACNGT 2 cut(s) 24, 187
TaiI ACGT 1 cut(s) 193
TaqI TCGA 1 cut(s) 62
TaqII GACCGA 1 cut(s) 128
TauI GCSGC 1 cut(s) 38
TscAI CASTG 1 cut(s) 190
TseI GCWGC 1 cut(s) 14
TspDTI ATGAA 1 cut(s) 128
TspGWI ACGGA 2 cut(s) 136, 209
TspRI CASTG 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.