AT1G52530

Hus1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015085
Physical Location & Seq
Forward (+)
19568588 .. 19570058
1471 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G52530.2

Sequence Viewer

Length: 960 bp
ATGAAGTTCAAGGCGTTTCTGACTGAAAATGGTGTGAATCTCTTAGAGAAGAGGTTTCTTCCAGCGTTTGACAAAATGGGGAAGAATTGTCATCTTCTTCTCACTAAAGAACACTTGTTCTTCCTCCATAACCTTCTCAATGGTGATGGAGTTCAATGCATTGCTCAGTTTCGCAAAGATGTTCTCTTTGATGATTACCGTATCTCGAGCCAGAACGAGGACCGTATCGCTTTCTCCTTAGATGTTGCTCTTCTGTATCGAGCGGTGAAGAGCAGTGTTAGTATTTGTACTGAGTTCAGTGGTGGATTAGCTTCAAACAGACTGCAGATCAAGCTTGTCAAAAAGCTCCCTCCTAACTGTACACAACCGATGCCTTTCCTCACGTTTGAAACGAAAGGATACAAGTCTGCAGTTATTCAAGATGTTCCGATTACGAAACCGTTATCTCGGTCTCAAGTTATCGAGCTGCAGACTGCTCTTGACTCGGCTCAAGACCTTCCTCCGACTCTTGTTCAAGTTCAAGACTCGAATCAGTTACAGAACTTTGTTGATCATATGAGACATGTTGGTGATGTTCTTAATGTCACGATAAGCAAGCACGGTGATCTGCAAGTGCAAGTCTCAACGACTTTGATTAGGCTTGGTATTGAGTTCCAGAGGCTTTCGGTTATTGGTGAGAAATCTCAGGCTCCTGTTGAAGATAGGAACTTAAGTGCTCAGGCTCGTTCAGAGAGAGCTATTGCTAGAGGAGATGCTCAGTCTGTGCAAGTGAGTGTAAAACATTTTTCAAAGAGCCTTCAATGTCACTTAACTAAACCAGATTCTACTTTCTATGGGATTGCTCCTCAAGGTGCTTGCTTGACAGTGATCTTCCAGTTCATGGTTCCCGGAACTCGTCAAACCGATAAATCAATCAGTTTGCATTGCCGACTTCCCGTGCTTGACCCAGGGTCCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04218 map04218
Pfam Domains
Protein Families
Hus1

Protein Analysis

319

Amino Acids

35.57

Weight (kDa)

8.92

Isoelectric Point (pI)

43.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hus1 PF04005 1 - 298 2.1e-77 Hus1-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015085)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52530 AT1G52530
fragaria_vesca FvH4_6g29440 FvH4_6g29440
malus_domestica MD17G1214300.v1.1
prunus_persica Prupe.3G090200_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0134931
rosa_laevigata RLG00000019431
rosa_multiflora Rmu_sc0001385.1_g000004 Rmu_sc0007475.1_g000007
rosa_roxburghii Rroxscaffold_2G00109630
rosa_rugosa Rorug02G0321300
rosa_samantha Rh2AG372500 Rh2BG378800 Rh2CG357700
rosa_wichuraiana Rw2G030410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 880
AccBSI CCGCTC 1 cut(s) 263
AciI CCGC 1 cut(s) 263
AfaI GTAC 2 cut(s) 289, 361
AfiI CCNNNNNNNGG 2 cut(s) 217, 880
AflII CTTAAG 1 cut(s) 709
AflIII ACRYGT 1 cut(s) 562
AhdI GACNNNNNGTC 1 cut(s) 949
AjnI CCWGG 1 cut(s) 946
AluBI AGCT 5 cut(s) 311, 334, 346, 466, 737
AluI AGCT 5 cut(s) 311, 334, 346, 466, 737
Alw21I GWGCWC 1 cut(s) 718
Alw26I GTCTC 3 cut(s) 456, 553, 625
Ama87I CYCGRG 1 cut(s) 205
ApeKI GCWGC 1 cut(s) 466
AspS9I GGNCC 2 cut(s) 220, 951
AsuC2I CCSGG 1 cut(s) 888
AsuHPI GGTGA 5 cut(s) 155, 277, 581, 614, 686
AvaI CYCGRG 1 cut(s) 205
AvaII GGWCC 2 cut(s) 220, 951
Bbv12I GWGCWC 1 cut(s) 718
BbvI GCAGC 1 cut(s) 453
BccI CCATC 1 cut(s) 140
BciT130I CCWGG 1 cut(s) 948
BciVI GTATCC 1 cut(s) 392
BclI TGATCA 1 cut(s) 550
BcnI CCSGG 1 cut(s) 888
BcoDI GTCTC 3 cut(s) 456, 553, 625
BfaI CTAG 1 cut(s) 744
BfmI CTRYAG 3 cut(s) 323, 408, 467
BfrI CTTAAG 1 cut(s) 709
BfuI GTATCC 1 cut(s) 392
BisI GCNGC 1 cut(s) 467
BlsI GCNGC 1 cut(s) 468
Bme1390I CCNGG 2 cut(s) 888, 948
Bme18I GGWCC 2 cut(s) 220, 951
BmeRI GACNNNNNGTC 1 cut(s) 949
BmeT110I CYCGRG 1 cut(s) 205
BmgT120I GGNCC 2 cut(s) 220, 951
BmiI GGNNCC 3 cut(s) 690, 885, 952
BmrFI CCNGG 2 cut(s) 888, 948
BmsI GCATC 2 cut(s) 360, 742
Bpu10I CCTNAGC 1 cut(s) 717
BpuEI CTTGAG 3 cut(s) 438, 474, 831
BpuMI CCSGG 1 cut(s) 888
BsaI GGTCTC 1 cut(s) 456
BsaJI CCNNGG 2 cut(s) 946, 947
Bsc4I CCNNNNNNNGG 2 cut(s) 217, 880
Bse1I ACTGG 1 cut(s) 874
Bse3DI GCAATG 2 cut(s) 159, 922
BseBI CCWGG 1 cut(s) 948
BseDI CCNNGG 2 cut(s) 946, 947
BseLI CCNNNNNNNGG 2 cut(s) 217, 880
BseMI GCAATG 2 cut(s) 159, 922
BseMII CTCAG 5 cut(s) 179, 282, 698, 731, 770
BseNI ACTGG 1 cut(s) 874
BseRI GAGGAG 2 cut(s) 762, 834
BseXI GCAGC 1 cut(s) 453
BsiHKAI GWGCWC 1 cut(s) 718
BsiHKCI CYCGRG 1 cut(s) 205
BsiSI CCGG 1 cut(s) 888
BslI CCNNNNNNNGG 2 cut(s) 217, 880
BsmAI GTCTC 3 cut(s) 456, 553, 625
Bso31I GGTCTC 1 cut(s) 456
BsoBI CYCGRG 1 cut(s) 205
Bsp1286I GDGCHC 1 cut(s) 718
Bsp1407I TGTACA 1 cut(s) 359
Bsp143I GATC 4 cut(s) 327, 550, 604, 867
BspACI CCGC 1 cut(s) 263
BspCNI CTCAG 5 cut(s) 178, 283, 697, 730, 769
BspLI GGNNCC 3 cut(s) 690, 885, 952
BspMAI CTGCAG 3 cut(s) 327, 412, 471
BspQI GCTCTTC 2 cut(s) 255, 263
BspTI CTTAAG 1 cut(s) 709
BspTNI GGTCTC 1 cut(s) 456
BsrBI CCGCTC 1 cut(s) 263
BsrDI GCAATG 2 cut(s) 159, 922
BsrGI TGTACA 1 cut(s) 359
BsrI ACTGG 1 cut(s) 874
BssECI CCNNGG 2 cut(s) 946, 947
BssMI GATC 4 cut(s) 327, 550, 604, 867
Bst2UI CCWGG 1 cut(s) 948
Bst4CI ACNGT 6 cut(s) 200, 224, 359, 441, 602, 865
Bst6I CTCTTC 3 cut(s) 44, 255, 263
BstAFI CTTAAG 1 cut(s) 709
BstAUI TGTACA 1 cut(s) 359
BstC8I GCNNGC 2 cut(s) 596, 856
BstDEI CTNAG 7 cut(s) 43, 165, 238, 291, 684, 717, 756
BstKTI GATC 4 cut(s) 330, 553, 607, 870
BstMAI GTCTC 3 cut(s) 456, 553, 625
BstMBI GATC 4 cut(s) 327, 550, 604, 867
BstMWI GCNNNNNNNGC 1 cut(s) 331
BstNI CCWGG 1 cut(s) 948
BstNSI RCATGY 1 cut(s) 566
BstSCI CCNGG 2 cut(s) 886, 946
BstSFI CTRYAG 3 cut(s) 323, 408, 467
BstV1I GCAGC 1 cut(s) 453
BsuI GTATCC 1 cut(s) 392
BtsI GCAGTG 1 cut(s) 280
BtsIMutI CAGTG 3 cut(s) 280, 304, 870
Cac8I GCNNGC 2 cut(s) 596, 856
Cfr13I GGNCC 2 cut(s) 220, 951
Csp6I GTAC 2 cut(s) 288, 360
CviAII CATG 2 cut(s) 563, 880
CviQI GTAC 2 cut(s) 288, 360
DdeI CTNAG 7 cut(s) 43, 165, 238, 291, 684, 717, 756
DpnI GATC 4 cut(s) 329, 552, 606, 869
DpnII GATC 4 cut(s) 327, 550, 604, 867
DriI GACNNNNNGTC 1 cut(s) 949
Eam1104I CTCTTC 3 cut(s) 44, 255, 263
Eam1105I GACNNNNNGTC 1 cut(s) 949
EarI CTCTTC 3 cut(s) 44, 255, 263
Eco31I GGTCTC 1 cut(s) 456
Eco47I GGWCC 2 cut(s) 220, 951
Eco88I CYCGRG 1 cut(s) 205
EcoRII CCWGG 1 cut(s) 946
EcoT22I ATGCAT 1 cut(s) 161
FaeI CATG 2 cut(s) 566, 883
FaiI YATR 6 cut(s) 129, 555, 557, 564, 834, 881
FatI CATG 2 cut(s) 562, 879
FauNDI CATATG 1 cut(s) 555
FbaI TGATCA 1 cut(s) 550
Fnu4HI GCNGC 1 cut(s) 467
Fsp4HI GCNGC 1 cut(s) 467
FspBI CTAG 1 cut(s) 744
GluI GCNGC 1 cut(s) 467
HapII CCGG 1 cut(s) 888
Hin1II CATG 2 cut(s) 566, 883
HindIII AAGCTT 1 cut(s) 332
HinfI GANTC 6 cut(s) 37, 482, 505, 524, 529, 821
HpaII CCGG 1 cut(s) 888
HphI GGTGA 5 cut(s) 155, 277, 581, 614, 686
Hpy166II GTNNAC 1 cut(s) 362
Hpy188I TCNGA 4 cut(s) 21, 429, 504, 730
Hpy188III TCNNGA 7 cut(s) 205, 419, 479, 491, 521, 586, 655
Hpy8I GTNNAC 1 cut(s) 362
HpyAV CCTTC 3 cut(s) 143, 506, 806
HpyCH4III ACNGT 6 cut(s) 200, 224, 359, 441, 602, 865
HpyCH4IV ACGT 1 cut(s) 383
HpyCH4V TGCA 8 cut(s) 159, 325, 410, 469, 610, 616, 766, 922
HpyF10VI GCNNNNNNNGC 1 cut(s) 331
HpyF3I CTNAG 7 cut(s) 43, 165, 238, 291, 684, 717, 756
HpySE526I ACGT 1 cut(s) 383
Hsp92II CATG 2 cut(s) 566, 883
Ksp22I TGATCA 1 cut(s) 550
Kzo9I GATC 4 cut(s) 327, 550, 604, 867
LguI GCTCTTC 2 cut(s) 255, 263
LmnI GCTCC 3 cut(s) 351, 694, 847
Lsp1109I GCAGC 1 cut(s) 453
LweI GCATC 2 cut(s) 360, 742
MaeI CTAG 1 cut(s) 744
MaeII ACGT 1 cut(s) 383
MaeIII GTNAC 3 cut(s) 534, 583, 803
MalI GATC 4 cut(s) 329, 552, 606, 869
MbiI CCGCTC 1 cut(s) 263
MboI GATC 4 cut(s) 327, 550, 604, 867
MhlI GDGCHC 1 cut(s) 718
MluCI AATT 1 cut(s) 85
MlyI GAGTC 3 cut(s) 476, 499, 518
MmeI TCCRAC 1 cut(s) 527
MnlI CCTC 9 cut(s) 45, 134, 211, 360, 389, 510, 651, 740, 855
Mph1103I ATGCAT 1 cut(s) 161
MseI TTAA 3 cut(s) 579, 710, 809
MslI CAYNNNNRTG 1 cut(s) 567
MspCI CTTAAG 1 cut(s) 709
MspI CCGG 1 cut(s) 888
MspR9I CCNGG 2 cut(s) 888, 948
MvaI CCWGG 1 cut(s) 948
MwoI GCNNNNNNNGC 1 cut(s) 331
NciI CCSGG 1 cut(s) 888
NdeI CATATG 1 cut(s) 555
NdeII GATC 4 cut(s) 327, 550, 604, 867
NlaIII CATG 2 cut(s) 566, 883
NlaIV GGNNCC 3 cut(s) 690, 885, 952
NmeAIII GCCGAG 1 cut(s) 464
NmuCI GTSAC 2 cut(s) 583, 803
NsiI ATGCAT 1 cut(s) 161
NspI RCATGY 1 cut(s) 566
PaeR7I CTCGAG 1 cut(s) 205
PasI CCCWGGG 1 cut(s) 947
PciI ACATGT 1 cut(s) 562
PciSI GCTCTTC 2 cut(s) 255, 263
PcsI WCGNNNNNNNCGW 1 cut(s) 389
PfeI GAWTC 3 cut(s) 37, 529, 821
PflMI CCANNNNNTGG 1 cut(s) 880
PfoI TCCNGGA 1 cut(s) 886
PkrI GCNGC 1 cut(s) 468
PleI GAGTC 3 cut(s) 476, 499, 518
PpsI GAGTC 3 cut(s) 476, 499, 518
PscI ACATGT 1 cut(s) 562
Psp6I CCWGG 1 cut(s) 946
PspGI CCWGG 1 cut(s) 946
PspN4I GGNNCC 3 cut(s) 690, 885, 952
PspPI GGNCC 2 cut(s) 220, 951
PstI CTGCAG 3 cut(s) 327, 412, 471
RsaI GTAC 2 cut(s) 289, 361
RsaNI GTAC 2 cut(s) 288, 360
RseI CAYNNNNRTG 1 cut(s) 567
SapI GCTCTTC 2 cut(s) 255, 263
SaqAI TTAA 3 cut(s) 579, 710, 809
SatI GCNGC 1 cut(s) 467
Sau3AI GATC 4 cut(s) 327, 550, 604, 867
Sau96I GGNCC 2 cut(s) 220, 951
SchI GAGTC 3 cut(s) 476, 499, 518
ScrFI CCNGG 2 cut(s) 888, 948
SduI GDGCHC 1 cut(s) 718
SfaNI GCATC 2 cut(s) 360, 742
SfcI CTRYAG 3 cut(s) 323, 408, 467
Sfr274I CTCGAG 1 cut(s) 205
SinI GGWCC 2 cut(s) 220, 951
SlaI CTCGAG 1 cut(s) 205
SmiMI CAYNNNNRTG 1 cut(s) 567
SmlI CTYRAG 5 cut(s) 205, 453, 489, 709, 846
SmoI CTYRAG 5 cut(s) 205, 453, 489, 709, 846
Sse9I AATT 1 cut(s) 85
SsiI CCGC 1 cut(s) 263
SspMI CTAG 1 cut(s) 744
StyD4I CCNGG 2 cut(s) 886, 946
TaaI ACNGT 6 cut(s) 200, 224, 359, 441, 602, 865
TaiI ACGT 1 cut(s) 386
TaqI TCGA 4 cut(s) 206, 259, 462, 527
TaqII GACCGA 1 cut(s) 438
TasI AATT 1 cut(s) 85
TatI WGTACW 2 cut(s) 287, 359
TfiI GAWTC 3 cut(s) 37, 529, 821
Tru1I TTAA 3 cut(s) 579, 710, 809
Tru9I TTAA 3 cut(s) 579, 710, 809
TscAI CASTG 3 cut(s) 280, 304, 870
TseFI GTSAC 2 cut(s) 583, 803
TseI GCWGC 1 cut(s) 466
Tsp45I GTSAC 2 cut(s) 583, 803
TspDTI ATGAA 2 cut(s) 17, 868
TspRI CASTG 3 cut(s) 280, 304, 870
Van91I CCANNNNNTGG 1 cut(s) 880
Vha464I CTTAAG 1 cut(s) 709
VpaK11BI GGWCC 2 cut(s) 220, 951
XceI RCATGY 1 cut(s) 566
XhoI CTCGAG 1 cut(s) 205
XspI CTAG 1 cut(s) 744
Zsp2I ATGCAT 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.