Prupe.3G090200_v2.0.a1

Hus1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0015085
Physical Location & Seq
Forward (+)
6703446 .. 6705395
1950 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G090200.1

Sequence Viewer

Length: 960 bp
ATGAAGTTCAAGGCATTTCTTACAGAGAATGGTGTAAATCTTTTGGAAAAGAGGTTCCTACCAGCACTAGACAAGATGGGAAAGATATGCCATCTCTATCTCAATAGAGACCATGCTATCTTCCTCCACAACCTTCTCAATGGTGATGGAGTTCAGTCTATTGCTCAGTTTCGCAAAGAAGCTCTTTTCGATGACTATCGAATCTCCAGCCAGAATGAGGACCGCATTGCCTTTGCAGTAGACATTTCTCTTCTCCACCGTGCTCTTCGTAGTAGTGTCAGCATCTGTACTGAGTTTGGAAATGGGCCTACCGCCAATCGTCTCCAGATTAAATTGGTTAAGAAGCTGCCTCCAAATTCTACTCAACCAATGCCTTTCCTTACTTTTGAGACCAAGGGTTATAAATCTGCTGTAATTCAGGATGTGCCAATCTCAAAACCTATGTCCAGAGCTCAGGTTCTTGAACTTCAAACTGCTCTTGATATGGCTCAAGATTTGCCTCAGACTCTGGTTCAGGTTCCGGATTTGAATCAGTTGCAGAACTTTGTGGATCGGATGAGGCATGTGGGCGAGTTGCTTAATATTTCCATAAGCAAGTATGGGGATTTACACATTCAGATTTCCACCACATTAATCACACTTGGTGCTGAGTTTCAGAAGCTGTTGGTCTTAGGTGAAAGAGCTGATGCTCCATCTGAAGATCTAAACCTCAGTGCTCAGACTCGGTCAGCAAGGGCGATTTTGAGGGGAGATGCTCAATCTGTGCAAGTGAGTGTGAAGCATTTTGGCAAGAGCCTTCAGTGCCACTTGGCTAAGCCGGATTGCGCTTTCTATGGGATTGCTCCACAAGGTGCTTGCTTGACGGTGATCTTCCAGTTTTTCATTCCTGGTTCCCATCAAATGGACAAGTCAATCAGTCTACATTGCAGACTTCCTGTACTGGACCAAGGGTCAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04218 map04218
Pfam Domains
Protein Families
Hus1

Protein Analysis

320

Amino Acids

35.48

Weight (kDa)

8.69

Isoelectric Point (pI)

39.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015085)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52530 AT1G52530
fragaria_vesca FvH4_6g29440 FvH4_6g29440
malus_domestica MD17G1214300.v1.1
prunus_persica Prupe.3G090200_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0134931
rosa_laevigata RLG00000019431
rosa_multiflora Rmu_sc0001385.1_g000004 Rmu_sc0007475.1_g000007
rosa_roxburghii Rroxscaffold_2G00109630
rosa_rugosa Rorug02G0321300
rosa_samantha Rh2AG372500 Rh2BG378800 Rh2CG357700
rosa_wichuraiana Rw2G030410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 402
AccB7I CCANNNNNTGG 1 cut(s) 901
AccI GTMKAC 2 cut(s) 240, 919
AccIII TCCGGA 1 cut(s) 520
AciI CCGC 2 cut(s) 223, 312
AclWI GGATC 1 cut(s) 558
AcsI RAATTY 1 cut(s) 355
AcuI CTGAAG 2 cut(s) 717, 782
AdeI CACNNNGTG 2 cut(s) 644, 851
AfaI GTAC 2 cut(s) 289, 939
AfiI CCNNNNNNNGG 2 cut(s) 217, 901
AgsI TTSAA 4 cut(s) 10, 464, 470, 529
AhdI GACNNNNNGTC 1 cut(s) 949
AjnI CCWGG 1 cut(s) 886
AloI GAACNNNNNNTCC 2 cut(s) 38, 70
AluBI AGCT 5 cut(s) 182, 346, 452, 661, 683
AluI AGCT 5 cut(s) 182, 346, 452, 661, 683
Alw21I GWGCWC 3 cut(s) 265, 454, 718
Alw26I GTCTC 3 cut(s) 102, 326, 383
AlwI GGATC 1 cut(s) 558
AlwNI CAGNNNCTG 3 cut(s) 285, 508, 661
Aor13HI TCCGGA 1 cut(s) 520
AoxI GGCC 1 cut(s) 305
ApeKI GCWGC 1 cut(s) 346
ApoI RAATTY 1 cut(s) 355
ArsI GACNNNNNNTTYG 2 cut(s) 428, 460
AseI ATTAAT 1 cut(s) 632
AspLEI GCGC 1 cut(s) 827
AspS9I GGNCC 3 cut(s) 220, 305, 943
AsuHPI GGTGA 3 cut(s) 155, 686, 877
AvaII GGWCC 2 cut(s) 220, 943
BanII GRGCYC 1 cut(s) 454
Bbv12I GWGCWC 3 cut(s) 265, 454, 718
BbvI GCAGC 1 cut(s) 333
BccI CCATC 5 cut(s) 70, 99, 140, 700, 903
BciT130I CCWGG 1 cut(s) 888
BcoDI GTCTC 3 cut(s) 102, 326, 383
BfaI CTAG 1 cut(s) 68
BglII AGATCT 1 cut(s) 700
BisI GCNGC 1 cut(s) 347
BlpI GCTNAGC 1 cut(s) 813
BlsI GCNGC 1 cut(s) 348
Bme1390I CCNGG 1 cut(s) 888
Bme18I GGWCC 2 cut(s) 220, 943
BmeRI GACNNNNNGTC 1 cut(s) 949
BmgT120I GGNCC 3 cut(s) 220, 305, 943
BmiI GGNNCC 3 cut(s) 56, 519, 892
BmrFI CCNGG 1 cut(s) 888
BmsI GCATC 3 cut(s) 291, 676, 742
BpmI CTGGAG 2 cut(s) 190, 308
Bpu10I CCTNAGC 1 cut(s) 453
Bpu1102I GCTNAGC 1 cut(s) 813
BpuEI CTTGAG 1 cut(s) 474
BsaBI GATNNNNATC 2 cut(s) 195, 528
BsaI GGTCTC 2 cut(s) 102, 383
BsaJI CCNNGG 2 cut(s) 393, 946
BsaWI WCCGGW 1 cut(s) 520
Bsc4I CCNNNNNNNGG 2 cut(s) 217, 901
Bse1I ACTGG 2 cut(s) 874, 945
Bse3DI GCAATG 2 cut(s) 225, 922
Bse8I GATNNNNATC 2 cut(s) 195, 528
BseAI TCCGGA 1 cut(s) 520
BseBI CCWGG 1 cut(s) 888
BseDI CCNNGG 2 cut(s) 393, 946
BseGI GGATG 2 cut(s) 427, 561
BseJI GATNNNNATC 2 cut(s) 195, 528
BseLI CCNNNNNNNGG 2 cut(s) 217, 901
BseMI GCAATG 2 cut(s) 225, 922
BseMII CTCAG 7 cut(s) 179, 282, 467, 515, 639, 724, 731
BseNI ACTGG 2 cut(s) 874, 945
BseXI GCAGC 1 cut(s) 333
BshFI GGCC 1 cut(s) 307
BsiHKAI GWGCWC 3 cut(s) 265, 454, 718
BsiSI CCGG 2 cut(s) 521, 818
BslI CCNNNNNNNGG 2 cut(s) 217, 901
BsmAI GTCTC 3 cut(s) 102, 326, 383
BsmBI CGTCTC 1 cut(s) 326
BsnI GGCC 1 cut(s) 307
Bso31I GGTCTC 2 cut(s) 102, 383
Bsp1286I GDGCHC 3 cut(s) 265, 454, 718
Bsp13I TCCGGA 1 cut(s) 520
Bsp143I GATC 3 cut(s) 550, 700, 867
Bsp1720I GCTNAGC 1 cut(s) 813
BspACI CCGC 2 cut(s) 223, 312
BspANI GGCC 1 cut(s) 307
BspCNI CTCAG 7 cut(s) 178, 283, 466, 514, 640, 723, 730
BspEI TCCGGA 1 cut(s) 520
BspLI GGNNCC 3 cut(s) 56, 519, 892
BspPI GGATC 1 cut(s) 558
BspQI GCTCTTC 1 cut(s) 270
BspTNI GGTCTC 2 cut(s) 102, 383
BsrDI GCAATG 2 cut(s) 225, 922
BsrI ACTGG 2 cut(s) 874, 945
BssECI CCNNGG 2 cut(s) 393, 946
BssMI GATC 3 cut(s) 550, 700, 867
BssT1I CCWWGG 2 cut(s) 393, 946
Bst2UI CCWGG 1 cut(s) 888
Bst4CI ACNGT 2 cut(s) 260, 865
Bst6I CTCTTC 2 cut(s) 255, 270
BstC8I GCNNGC 1 cut(s) 856
BstDEI CTNAG 9 cut(s) 165, 291, 453, 501, 648, 670, 710, 717, 813
BstF5I GGATG 2 cut(s) 427, 561
BstHHI GCGC 1 cut(s) 827
BstKTI GATC 3 cut(s) 553, 703, 870
BstMAI GTCTC 3 cut(s) 102, 326, 383
BstMBI GATC 3 cut(s) 550, 700, 867
BstMWI GCNNNNNNNGC 1 cut(s) 801
BstNI CCWGG 1 cut(s) 888
BstNSI RCATGY 1 cut(s) 566
BstSCI CCNGG 1 cut(s) 886
BstV1I GCAGC 1 cut(s) 333
BstX2I RGATCY 1 cut(s) 700
BstYI RGATCY 1 cut(s) 700
BsuRI GGCC 1 cut(s) 307
BtsCI GGATG 2 cut(s) 427, 561
BtsIMutI CAGTG 2 cut(s) 718, 806
Cac8I GCNNGC 1 cut(s) 856
CaiI CAGNNNCTG 3 cut(s) 285, 508, 661
CfoI GCGC 1 cut(s) 827
Cfr13I GGNCC 3 cut(s) 220, 305, 943
Csp6I GTAC 2 cut(s) 288, 938
CviAII CATG 2 cut(s) 113, 563
CviQI GTAC 2 cut(s) 288, 938
DdeI CTNAG 9 cut(s) 165, 291, 453, 501, 648, 670, 710, 717, 813
DpnI GATC 3 cut(s) 552, 702, 869
DpnII GATC 3 cut(s) 550, 700, 867
DraIII CACNNNGTG 2 cut(s) 644, 851
DriI GACNNNNNGTC 1 cut(s) 949
Eam1104I CTCTTC 2 cut(s) 255, 270
Eam1105I GACNNNNNGTC 1 cut(s) 949
EarI CTCTTC 2 cut(s) 255, 270
Ecl136II GAGCTC 1 cut(s) 452
Eco130I CCWWGG 2 cut(s) 393, 946
Eco24I GRGCYC 1 cut(s) 454
Eco31I GGTCTC 2 cut(s) 102, 383
Eco47I GGWCC 2 cut(s) 220, 943
Eco53kI GAGCTC 1 cut(s) 452
Eco57I CTGAAG 2 cut(s) 717, 782
EcoICRI GAGCTC 1 cut(s) 452
EcoRII CCWGG 1 cut(s) 886
EcoT14I CCWWGG 2 cut(s) 393, 946
EcoT38I GRGCYC 1 cut(s) 454
ErhI CCWWGG 2 cut(s) 393, 946
Esp3I CGTCTC 1 cut(s) 326
FaeI CATG 2 cut(s) 116, 566
FaiI YATR 9 cut(s) 88, 114, 402, 443, 485, 564, 590, 600, 834
FalI AAGNNNNNCTT 2 cut(s) 168, 200
FatI CATG 2 cut(s) 112, 562
FblI GTMKAC 2 cut(s) 240, 919
Fnu4HI GCNGC 1 cut(s) 347
FokI GGATG 2 cut(s) 434, 568
FriOI GRGCYC 1 cut(s) 454
Fsp4HI GCNGC 1 cut(s) 347
FspBI CTAG 1 cut(s) 68
GlaI GCGC 1 cut(s) 826
GluI GCNGC 1 cut(s) 347
GsuI CTGGAG 2 cut(s) 190, 308
HaeIII GGCC 1 cut(s) 307
HapII CCGG 2 cut(s) 521, 818
HhaI GCGC 1 cut(s) 827
Hin1II CATG 2 cut(s) 116, 566
Hin6I GCGC 1 cut(s) 825
HinP1I GCGC 1 cut(s) 825
HinfI GANTC 4 cut(s) 201, 505, 529, 721
HpaII CCGG 2 cut(s) 521, 818
HphI GGTGA 3 cut(s) 155, 686, 877
Hpy166II GTNNAC 2 cut(s) 241, 920
Hpy188I TCNGA 6 cut(s) 504, 555, 618, 657, 697, 720
Hpy188III TCNNGA 7 cut(s) 325, 419, 447, 461, 479, 491, 521
Hpy8I GTNNAC 2 cut(s) 241, 920
HpyAV CCTTC 2 cut(s) 143, 806
HpyCH4III ACNGT 2 cut(s) 260, 865
HpyCH4V TGCA 4 cut(s) 236, 538, 766, 927
HpyF10VI GCNNNNNNNGC 1 cut(s) 801
HpyF3I CTNAG 9 cut(s) 165, 291, 453, 501, 648, 670, 710, 717, 813
Hsp92II CATG 2 cut(s) 116, 566
HspAI GCGC 1 cut(s) 825
Kpn2I TCCGGA 1 cut(s) 520
Kzo9I GATC 3 cut(s) 550, 700, 867
LguI GCTCTTC 1 cut(s) 270
LmnI GCTCC 2 cut(s) 694, 847
Lsp1109I GCAGC 1 cut(s) 333
LweI GCATC 3 cut(s) 291, 676, 742
MaeI CTAG 1 cut(s) 68
MalI GATC 3 cut(s) 552, 702, 869
MboI GATC 3 cut(s) 550, 700, 867
MboII GAAGA 5 cut(s) 112, 242, 257, 710, 862
MflI RGATCY 1 cut(s) 700
MhlI GDGCHC 3 cut(s) 265, 454, 718
MluCI AATT 3 cut(s) 332, 355, 414
MlyI GAGTC 2 cut(s) 499, 715
MnlI CCTC 8 cut(s) 45, 134, 211, 360, 510, 552, 719, 738
MroI TCCGGA 1 cut(s) 520
MseI TTAA 4 cut(s) 330, 339, 579, 632
MspI CCGG 2 cut(s) 521, 818
MspR9I CCNGG 1 cut(s) 888
MvaI CCWGG 1 cut(s) 888
MwoI GCNNNNNNNGC 1 cut(s) 801
NdeII GATC 3 cut(s) 550, 700, 867
NlaIII CATG 2 cut(s) 116, 566
NlaIV GGNNCC 3 cut(s) 56, 519, 892
NspI RCATGY 1 cut(s) 566
PciSI GCTCTTC 1 cut(s) 270
PfeI GAWTC 2 cut(s) 201, 529
PflFI GACNNNGTC 1 cut(s) 724
PflMI CCANNNNNTGG 1 cut(s) 901
PkrI GCNGC 1 cut(s) 348
PleI GAGTC 2 cut(s) 499, 715
PpsI GAGTC 2 cut(s) 499, 715
PshBI ATTAAT 1 cut(s) 632
PsiI TTATAA 1 cut(s) 402
Psp124BI GAGCTC 1 cut(s) 454
Psp6I CCWGG 1 cut(s) 886
PspGI CCWGG 1 cut(s) 886
PspN4I GGNNCC 3 cut(s) 56, 519, 892
PspPI GGNCC 3 cut(s) 220, 305, 943
PstNI CAGNNNCTG 3 cut(s) 285, 508, 661
PsuI RGATCY 1 cut(s) 700
PsyI GACNNNGTC 1 cut(s) 724
RsaI GTAC 2 cut(s) 289, 939
RsaNI GTAC 2 cut(s) 288, 938
SacI GAGCTC 1 cut(s) 454
SapI GCTCTTC 1 cut(s) 270
SaqAI TTAA 4 cut(s) 330, 339, 579, 632
SatI GCNGC 1 cut(s) 347
Sau3AI GATC 3 cut(s) 550, 700, 867
Sau96I GGNCC 3 cut(s) 220, 305, 943
SchI GAGTC 2 cut(s) 499, 715
ScrFI CCNGG 1 cut(s) 888
SduI GDGCHC 3 cut(s) 265, 454, 718
SfaNI GCATC 3 cut(s) 291, 676, 742
SinI GGWCC 2 cut(s) 220, 943
SmlI CTYRAG 1 cut(s) 489
SmoI CTYRAG 1 cut(s) 489
Sse9I AATT 3 cut(s) 332, 355, 414
SsiI CCGC 2 cut(s) 223, 312
SspI AATATT 1 cut(s) 583
SspMI CTAG 1 cut(s) 68
SstI GAGCTC 1 cut(s) 454
StyD4I CCNGG 1 cut(s) 886
StyI CCWWGG 2 cut(s) 393, 946
TaaI ACNGT 2 cut(s) 260, 865
TaqI TCGA 2 cut(s) 189, 199
TaqII GACCGA 1 cut(s) 714
TasI AATT 3 cut(s) 332, 355, 414
TatI WGTACW 2 cut(s) 287, 937
TfiI GAWTC 2 cut(s) 201, 529
Tru1I TTAA 4 cut(s) 330, 339, 579, 632
Tru9I TTAA 4 cut(s) 330, 339, 579, 632
TscAI CASTG 2 cut(s) 718, 806
TseI GCWGC 1 cut(s) 346
TspDTI ATGAA 2 cut(s) 17, 871
TspRI CASTG 2 cut(s) 718, 806
Tth111I GACNNNGTC 1 cut(s) 724
Van91I CCANNNNNTGG 1 cut(s) 901
VpaK11BI GGWCC 2 cut(s) 220, 943
VspI ATTAAT 1 cut(s) 632
XapI RAATTY 1 cut(s) 355
XceI RCATGY 1 cut(s) 566
XmiI GTMKAC 2 cut(s) 240, 919
XspI CTAG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.