Rorug02G0321300

Hus1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0015085
Physical Location & Seq
Forward (+)
39297752 .. 39297943
192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0321300.1

Sequence Viewer

Length: 192 bp
ATGGCTTTTTTGAGTATCTCCTTCATCTTAACTCTTTTATGCCTTGTGGGTTATCAGCTTTTGTGCCTAATGGACCTCGAGGACGATTACATCAACTCATATGATTCATCATCTCGGATAAACCGTACTGTTTTGCCAGAGTTTATCGTTCAAGGAGTTTTCTGCGTCATTCTTTTTATAACGAGACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04218 map04218
Pfam Domains
Protein Families
Hus1

Protein Analysis

63

Amino Acids

7.26

Weight (kDa)

4.52

Isoelectric Point (pI)

46.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cornichon PF03311 5 - 63 6.7e-17 Cornichon protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015085)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52530 AT1G52530
fragaria_vesca FvH4_6g29440 FvH4_6g29440
malus_domestica MD17G1214300.v1.1
prunus_persica Prupe.3G090200_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0134931
rosa_laevigata RLG00000019431
rosa_multiflora Rmu_sc0001385.1_g000004 Rmu_sc0007475.1_g000007
rosa_roxburghii Rroxscaffold_2G00109630
rosa_rugosa Rorug02G0321300
rosa_samantha Rh2AG372500 Rh2BG378800 Rh2CG357700
rosa_wichuraiana Rw2G030410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 179
AbsI CCTCGAGG 1 cut(s) 77
AfaI GTAC 1 cut(s) 127
AgsI TTSAA 1 cut(s) 152
AluBI AGCT 1 cut(s) 58
AluI AGCT 1 cut(s) 58
Alw26I GTCTC 1 cut(s) 178
Ama87I CYCGRG 1 cut(s) 77
AspS9I GGNCC 1 cut(s) 73
AvaI CYCGRG 1 cut(s) 77
AvaII GGWCC 1 cut(s) 73
BcoDI GTCTC 1 cut(s) 178
Bme18I GGWCC 1 cut(s) 73
BmeT110I CYCGRG 1 cut(s) 77
BmgT120I GGNCC 1 cut(s) 73
BsiHKCI CYCGRG 1 cut(s) 77
BsmAI GTCTC 1 cut(s) 178
BsoBI CYCGRG 1 cut(s) 77
Bst4CI ACNGT 2 cut(s) 125, 130
BstMAI GTCTC 1 cut(s) 178
Cfr13I GGNCC 1 cut(s) 73
CseI GACGC 1 cut(s) 154
Csp6I GTAC 1 cut(s) 126
CviJI RGCY 2 cut(s) 5, 58
CviKI_1 RGCY 2 cut(s) 5, 58
CviQI GTAC 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 73
Eco88I CYCGRG 1 cut(s) 77
FaiI YATR 4 cut(s) 40, 100, 102, 179
FauNDI CATATG 1 cut(s) 100
HgaI GACGC 1 cut(s) 154
HinfI GANTC 1 cut(s) 104
Hpy188I TCNGA 1 cut(s) 117
HpyAV CCTTC 1 cut(s) 31
HpyCH4III ACNGT 2 cut(s) 125, 130
LpnPI CCDG 1 cut(s) 150
MnlI CCTC 2 cut(s) 73, 86
MseI TTAA 1 cut(s) 29
NdeI CATATG 1 cut(s) 100
PaeR7I CTCGAG 1 cut(s) 77
PcsI WCGNNNNNNNCGW 1 cut(s) 121
PfeI GAWTC 1 cut(s) 104
PsiI TTATAA 1 cut(s) 179
PspPI GGNCC 1 cut(s) 73
PspXI VCTCGAGB 1 cut(s) 77
RsaI GTAC 1 cut(s) 127
RsaNI GTAC 1 cut(s) 126
SaqAI TTAA 1 cut(s) 29
Sau96I GGNCC 1 cut(s) 73
SetI ASST 2 cut(s) 60, 78
Sfr274I CTCGAG 1 cut(s) 77
SgeI CNNG 6 cut(s) 56, 89, 91, 126, 149, 164
SinI GGWCC 1 cut(s) 73
SlaI CTCGAG 1 cut(s) 77
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
TaaI ACNGT 2 cut(s) 125, 130
TaqI TCGA 1 cut(s) 78
TfiI GAWTC 1 cut(s) 104
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TspDTI ATGAA 2 cut(s) 13, 96
VpaK11BI GGWCC 1 cut(s) 73
XhoI CTCGAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.