Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011894

Physical Location & Seq

Genomic Coordinates Reverse (-)

20103756 .. 20106077

Gene Structure 2322 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G53850.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGTTTCTCACTAGAACTGAGTATGACAGAGGAGTGAACACTTTTTCTCCAGAAGGAAGGCTATTTCAAGTGGAATATGCCATTGAAGCTATCAAGCTTGGTTCTACTGCAATTGGAGTAAAGACAAAAGAAGGAGTTGTGCTTGCTGTCGAGAAGCGTATCACGTCGCCATTGCTGGAACCGAGCAGTGTGGAGAAGATTATGGAAATTGATGACCATATTGGTTGTGCTATGAGCGGTTTAATTGCTGACGCGCGCACACTTGTTGAGCATGCTAGAGTTGAAACTCAAAACCATAGATTCTCGTATGGTGAGCCGATGACTGTAGAGTCCACAACACAAGCACTGTGTGATCTGGCTTTACGGTTTGGTGAAGGAGAGGAAGAATCAATGTCTCGGCCGTTTGGAGTATCTCTTCTCATTGCTGGCCATGATGAAAATGGACCAAGCTTGTACTACACTGATCCTTCAGGAACATTCTGGCAGTGCAATGCAAAGGCAATTGGTTCAGGTTCTGAAGGAGCTGATAGCTCTCTTCAAGAGCAATTCAACAAAGATTTGTCTCTACAAGAAGCTGAGACTATCGCTGTATCTATCCTAAAGCAAGTTATGGAAGAAAAGGTGACTCCAAATAACGTGGATATTGCCAAGGTAGCACCAGCTTATCATCTCTACACTCCACAAGAAGTCGAAGCAGTCATCGCTCGTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0003674 GO:0003735 GO:0003824 GO:0004518 GO:0004540 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005839 GO:0005840 GO:0005844 GO:0005886 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0019773 GO:0022626 GO:0031090 GO:0032991 GO:0034641 GO:0042221 GO:0042788 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0071944 GO:0090304 GO:0090305 GO:0090501 GO:0098588 GO:0098805 GO:0140098 GO:1901360 GO:1902494 GO:1905368 GO:1905369 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome Proteasome_A_N Remorin_C

Protein Analysis

237

Amino Acids

25.95

Weight (kDa)

4.7

Isoelectric Point (pI)

46.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome_A_N	PF10584	8 - 30	1.3e-13	Proteasome subunit A N-terminal signature
Proteasome	PF00227	32 - 218	9.5e-60	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53850 AT1G53850 AT3G14290
fragaria_vesca	FvH4_3g12370
malus_domestica	MD05G1251400.v1.1 MD10G1231900.v1.1
prunus_persica	Prupe.4G112400_v2.0.a1 Prupe.4G112400_v2.0.a1
pyrus_communis	pycom10g19520
rosa_chinensis	RchiOBHm_Chr5g0020181
rosa_laevigata	RLG00000032507
rosa_multiflora	Rmu_sc0000116.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058020
rosa_rugosa	Rorug05G0057500
rosa_samantha	Rh5AG147900 Rh5BG147500 Rh5CG158900 Rh5DG146600
rosa_wichuraiana	Rw5G013080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	328
AccBSI	CCGCTC	1 cut(s)	237
AccII	CGCG	2 cut(s)	254, 256
AciI	CCGC	1 cut(s)	237
AclWI	GGATC	1 cut(s)	458
AcoI	YGGCCR	2 cut(s)	398, 427
AcuI	CTGAAG	2 cut(s)	453, 537
AdeI	CACNNNGTG	1 cut(s)	350
AfaI	GTAC	1 cut(s)	455
AgsI	TTSAA	5 cut(s)	68, 86, 284, 539, 550
AjiI	CACGTC	1 cut(s)	165
AluBI	AGCT	7 cut(s)	89, 97, 450, 524, 531, 575, 662
AluI	AGCT	7 cut(s)	89, 97, 450, 524, 531, 575, 662
Alw26I	GTCTC	3 cut(s)	399, 567, 572
AlwI	GGATC	1 cut(s)	458
AlwNI	CAGNNNCTG	1 cut(s)	515
AoxI	GGCC	2 cut(s)	398, 427
AspLEI	GCGC	2 cut(s)	256, 258
AspS9I	GGNCC	1 cut(s)	443
AsuHPI	GGTGA	3 cut(s)	323, 383, 634
AvaII	GGWCC	1 cut(s)	443
BalI	TGGCCA	1 cut(s)	429
BceAI	ACGGC	1 cut(s)	385
BcoDI	GTCTC	3 cut(s)	399, 567, 572
BfaI	CTAG	2 cut(s)	12, 276
BfmI	CTRYAG	1 cut(s)	324
Bme18I	GGWCC	1 cut(s)	443
BmgBI	CACGTC	1 cut(s)	165
BmgT120I	GGNCC	1 cut(s)	443
BmiI	GGNNCC	1 cut(s)	180
BpmI	CTGGAG	1 cut(s)	33
BsaJI	CCNNGG	1 cut(s)	648
BsaXI	ACNNNNNCTCC	2 cut(s)	31, 61
Bse3DI	GCAATG	3 cut(s)	170, 420, 496
BseDI	CCNNGG	1 cut(s)	648
BseMI	GCAATG	3 cut(s)	170, 420, 496
BseMII	CTCAG	2 cut(s)	9, 567
BsePI	GCGCGC	1 cut(s)	254
BseRI	GAGGAG	1 cut(s)	45
BseX3I	CGGCCG	1 cut(s)	398
Bsh1236I	CGCG	2 cut(s)	254, 256
Bsh1285I	CGRYCG	1 cut(s)	401
BshFI	GGCC	2 cut(s)	400, 429
BsiEI	CGRYCG	1 cut(s)	401
BsmAI	GTCTC	3 cut(s)	399, 567, 572
BsnI	GGCC	2 cut(s)	400, 429
Bsp143I	GATC	2 cut(s)	352, 463
BspACI	CCGC	1 cut(s)	237
BspANI	GGCC	2 cut(s)	400, 429
BspCNI	CTCAG	2 cut(s)	10, 568
BspFNI	CGCG	2 cut(s)	254, 256
BspLI	GGNNCC	1 cut(s)	180
BspPI	GGATC	1 cut(s)	458
BsrBI	CCGCTC	1 cut(s)	237
BsrDI	GCAATG	3 cut(s)	170, 420, 496
BssECI	CCNNGG	1 cut(s)	648
BssHII	GCGCGC	1 cut(s)	254
BssMI	GATC	2 cut(s)	352, 463
BssT1I	CCWWGG	1 cut(s)	648
Bst4CI	ACNGT	3 cut(s)	325, 348, 366
Bst6I	CTCTTC	2 cut(s)	420, 540
BstC8I	GCNNGC	4 cut(s)	144, 256, 273, 427
BstDEI	CTNAG	2 cut(s)	18, 576
BstFNI	CGCG	2 cut(s)	254, 256
BstHHI	GCGC	2 cut(s)	256, 258
BstKTI	GATC	2 cut(s)	355, 466
BstMAI	GTCTC	3 cut(s)	399, 567, 572
BstMBI	GATC	2 cut(s)	352, 463
BstMCI	CGRYCG	1 cut(s)	401
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 653, 701
BstNSI	RCATGY	1 cut(s)	275
BstSFI	CTRYAG	1 cut(s)	324
BstUI	CGCG	2 cut(s)	254, 256
BstZI	CGGCCG	1 cut(s)	398
BsuRI	GGCC	2 cut(s)	400, 429
BtgZI	GCGATG	1 cut(s)	685
BtrI	CACGTC	1 cut(s)	165
BtsI	GCAGTG	2 cut(s)	193, 491
BtsIMutI	CAGTG	4 cut(s)	193, 344, 459, 491
Cac8I	GCNNGC	4 cut(s)	144, 256, 273, 427
CaiI	CAGNNNCTG	1 cut(s)	515
CfoI	GCGC	2 cut(s)	256, 258
Cfr13I	GGNCC	1 cut(s)	443
CseI	GACGC	1 cut(s)	260
Csp6I	GTAC	1 cut(s)	454
CspCI	CAANNNNNGTGG	2 cut(s)	618, 653
CviAII	CATG	2 cut(s)	272, 431
CviQI	GTAC	1 cut(s)	454
DdeI	CTNAG	2 cut(s)	18, 576
DpnI	GATC	2 cut(s)	354, 465
DpnII	GATC	2 cut(s)	352, 463
DraIII	CACNNNGTG	1 cut(s)	350
DrdI	GACNNNNNNGTC	1 cut(s)	328
DseDI	GACNNNNNNGTC	1 cut(s)	328
EaeI	YGGCCR	2 cut(s)	398, 427
EagI	CGGCCG	1 cut(s)	398
Eam1104I	CTCTTC	2 cut(s)	420, 540
EarI	CTCTTC	2 cut(s)	420, 540
EclXI	CGGCCG	1 cut(s)	398
Eco130I	CCWWGG	1 cut(s)	648
Eco47I	GGWCC	1 cut(s)	443
Eco52I	CGGCCG	1 cut(s)	398
Eco57I	CTGAAG	2 cut(s)	453, 537
EcoT14I	CCWWGG	1 cut(s)	648
ErhI	CCWWGG	1 cut(s)	648
FaeI	CATG	2 cut(s)	275, 434
FatI	CATG	2 cut(s)	271, 430
FspBI	CTAG	2 cut(s)	12, 276
GlaI	GCGC	2 cut(s)	255, 257
GsuI	CTGGAG	1 cut(s)	33
HaeIII	GGCC	2 cut(s)	400, 429
HgaI	GACGC	1 cut(s)	260
HhaI	GCGC	2 cut(s)	256, 258
Hin1II	CATG	2 cut(s)	275, 434
Hin6I	GCGC	2 cut(s)	254, 256
HinP1I	GCGC	2 cut(s)	254, 256
HindIII	AAGCTT	2 cut(s)	95, 448
HinfI	GANTC	4 cut(s)	300, 329, 386, 625
HphI	GGTGA	3 cut(s)	323, 383, 634
Hpy166II	GTNNAC	2 cut(s)	37, 333
Hpy188I	TCNGA	1 cut(s)	517
Hpy188III	TCNNGA	4 cut(s)	50, 151, 471, 539
Hpy8I	GTNNAC	2 cut(s)	37, 333
Hpy99I	CGWCG	1 cut(s)	169
HpyAV	CCTTC	6 cut(s)	47, 51, 125, 368, 477, 512
HpyCH4III	ACNGT	3 cut(s)	325, 348, 366
HpyCH4IV	ACGT	2 cut(s)	164, 636
HpyCH4V	TGCA	3 cut(s)	110, 489, 494
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 653, 701
HpyF3I	CTNAG	2 cut(s)	18, 576
HpySE526I	ACGT	2 cut(s)	164, 636
Hsp92II	CATG	2 cut(s)	275, 434
HspAI	GCGC	2 cut(s)	254, 256
Kzo9I	GATC	2 cut(s)	352, 463
LmnI	GCTCC	1 cut(s)	521
LpnPI	CCDG	8 cut(s)	63, 161, 341, 411, 456, 466, 495, 672
MaeI	CTAG	2 cut(s)	12, 276
MaeII	ACGT	2 cut(s)	164, 636
MaeIII	GTNAC	1 cut(s)	622
MalI	GATC	2 cut(s)	354, 465
MbiI	CCGCTC	1 cut(s)	237
MboI	GATC	2 cut(s)	352, 463
MboII	GAAGA	5 cut(s)	208, 395, 407, 527, 626
MfeI	CAATTG	2 cut(s)	111, 501
MlsI	TGGCCA	1 cut(s)	429
MluCI	AATT	5 cut(s)	111, 207, 243, 501, 545
MluNI	TGGCCA	1 cut(s)	429
MlyI	GAGTC	2 cut(s)	338, 619
MnlI	CCTC	2 cut(s)	23, 373
Mox20I	TGGCCA	1 cut(s)	429
MscI	TGGCCA	1 cut(s)	429
MseI	TTAA	1 cut(s)	242
Msp20I	TGGCCA	1 cut(s)	429
MunI	CAATTG	2 cut(s)	111, 501
MvnI	CGCG	2 cut(s)	254, 256
MwoI	GCNNNNNNNGC	3 cut(s)	86, 653, 701
NdeII	GATC	2 cut(s)	352, 463
NlaIII	CATG	2 cut(s)	275, 434
NlaIV	GGNNCC	1 cut(s)	180
NmeAIII	GCCGAG	1 cut(s)	376
NmuCI	GTSAC	1 cut(s)	622
NspI	RCATGY	1 cut(s)	275
PaeI	GCATGC	1 cut(s)	275
PauI	GCGCGC	1 cut(s)	254
PfeI	GAWTC	2 cut(s)	300, 386
PleI	GAGTC	2 cut(s)	337, 619
PpsI	GAGTC	2 cut(s)	337, 619
PspN4I	GGNNCC	1 cut(s)	180
PspPI	GGNCC	1 cut(s)	443
PstNI	CAGNNNCTG	1 cut(s)	515
PteI	GCGCGC	1 cut(s)	254
RsaI	GTAC	1 cut(s)	455
RsaNI	GTAC	1 cut(s)	454
SaqAI	TTAA	1 cut(s)	242
Sau3AI	GATC	2 cut(s)	352, 463
Sau96I	GGNCC	1 cut(s)	443
SchI	GAGTC	2 cut(s)	338, 619
SfcI	CTRYAG	1 cut(s)	324
SinI	GGWCC	1 cut(s)	443
SphI	GCATGC	1 cut(s)	275
Sse9I	AATT	5 cut(s)	111, 207, 243, 501, 545
SsiI	CCGC	1 cut(s)	237
SspMI	CTAG	2 cut(s)	12, 276
StyI	CCWWGG	1 cut(s)	648
TaaI	ACNGT	3 cut(s)	325, 348, 366
TaiI	ACGT	2 cut(s)	167, 639
TaqI	TCGA	2 cut(s)	150, 690
TasI	AATT	5 cut(s)	111, 207, 243, 501, 545
TatI	WGTACW	1 cut(s)	453
TfiI	GAWTC	2 cut(s)	300, 386
Tru1I	TTAA	1 cut(s)	242
Tru9I	TTAA	1 cut(s)	242
TscAI	CASTG	4 cut(s)	193, 351, 466, 491
TseFI	GTSAC	1 cut(s)	622
Tsp45I	GTSAC	1 cut(s)	622
TspDTI	ATGAA	1 cut(s)	450
TspRI	CASTG	4 cut(s)	193, 351, 466, 491
VpaK11BI	GGWCC	1 cut(s)	443
XceI	RCATGY	1 cut(s)	275
XcmI	CCANNNNNNNNNTGG	1 cut(s)	437
XspI	CTAG	2 cut(s)	12, 276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.