FvH4_3g12370

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0011894
Physical Location & Seq
Forward (+)
7343276 .. 7347954
4679 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g12370.t1

Sequence Viewer

Length: 714 bp
ATGTTTCTCACAAGAACTGAGTATGACAGAGGAGTTAACACTTTCTCCCCGGAAGGGAGGCTGTTTCAAGTTGAATATGCCATTGAGGCTATTAAGCTGGGTTCAACTGCCATTGGGTTGAAGACAAAAGAAGGTGTTGTGCTTGCTGTGGAGAAGCGTATCACTTCGCCTTTGCTGGAACCCAGCAGTGTGGAGAAAATTATGGAAATTGATGCCCATATCGGATGTGCCATGAGTGGATTGATTGCTGATGCTCGTACACTTGTTGAACATGCACGAGTTGAAACTCAGAACCACAGGTTCTCCTATGGTGAACCAATGACTGTGGAGTCTACAACACAAGCTCTTTGTGATCTGGCGCTACGATTTGGTGAAGGTGATGAAGAGTCCATGTCTCGGCCATTTGGGGTTTCTCTTCTTATTGCAGGTCATGATGAGCATGGGCCCAGCTTGTACTACACTGATCCATCTGGCACATTTTGGCAATGCAATGCAAAAGCTATAGGGTCGGGTTCAGAAGGTGCAGACAGTTCTCTGCAAGAGCAATACAGCAAGGACTTGACTCTTAAAGAAGCCGAAACTATTGCTCTCTCCATTCTTAAGCAAGTCATGGAGGAAAAGGTGACTCCCAATAATGTTGATATTGCAAAGGTTTCTCCCACATACCATCTATATACCCCTTCTGAGGTGGAGGAGGTCATCAGTCGCCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005839 GO:0019773 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1905368 GO:1905369
KEGG Pathways
Metabolic & Signaling
ko03050 map03050
Pfam Domains
Protein Families
Proteasome Proteasome_A_N

Protein Analysis

238

Amino Acids

26.02

Weight (kDa)

4.81

Isoelectric Point (pI)

43.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proteasome_A_N PF10584 8 - 30 1.3e-13 Proteasome subunit A N-terminal signature
Proteasome PF00227 32 - 218 8.6e-59 Proteasome subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011894)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53850 AT1G53850 AT3G14290
fragaria_vesca FvH4_3g12370
malus_domestica MD05G1251400.v1.1 MD10G1231900.v1.1
prunus_persica Prupe.4G112400_v2.0.a1 Prupe.4G112400_v2.0.a1
pyrus_communis pycom10g19520
rosa_chinensis RchiOBHm_Chr5g0020181
rosa_laevigata RLG00000032507
rosa_multiflora Rmu_sc0000116.1_g000001
rosa_roxburghii Rroxscaffold_1G00058020
rosa_rugosa Rorug05G0057500
rosa_samantha Rh5AG147900 Rh5BG147500 Rh5CG158900 Rh5DG146600
rosa_wichuraiana Rw5G013080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 328
Acc36I ACCTGC 1 cut(s) 416
AccI GTMKAC 1 cut(s) 332
AclWI GGATC 1 cut(s) 458
AcoI YGGCCR 1 cut(s) 398
AfaI GTAC 2 cut(s) 259, 455
AfiI CCNNNNNNNGG 3 cut(s) 54, 396, 685
AflII CTTAAG 1 cut(s) 599
AgsI TTSAA 6 cut(s) 68, 74, 105, 121, 269, 284
AluBI AGCT 4 cut(s) 97, 344, 450, 500
AluI AGCT 4 cut(s) 97, 344, 450, 500
Alw26I GTCTC 1 cut(s) 399
AlwI GGATC 1 cut(s) 458
AoxI GGCC 2 cut(s) 398, 443
ApaI GGGCCC 1 cut(s) 447
AspLEI GCGC 1 cut(s) 361
AspS9I GGNCC 2 cut(s) 443, 444
AsuC2I CCSGG 1 cut(s) 50
AsuHPI GGTGA 4 cut(s) 323, 383, 389, 634
BaeGI GKGCMC 1 cut(s) 447
BanII GRGCYC 1 cut(s) 447
BauI CACGAG 1 cut(s) 276
BbsI GAAGAC 1 cut(s) 128
BccI CCATC 2 cut(s) 475, 675
BcgI CGANNNNNNTGC 2 cut(s) 566, 600
BcnI CCSGG 1 cut(s) 50
BcoDI GTCTC 1 cut(s) 399
BfmI CTRYAG 1 cut(s) 501
BfoI RGCGCY 1 cut(s) 362
BfrI CTTAAG 1 cut(s) 599
BfuAI ACCTGC 1 cut(s) 416
BglI GCCNNNNNGGC 1 cut(s) 86
Bme1390I CCNGG 1 cut(s) 50
BmgT120I GGNCC 2 cut(s) 443, 444
BmiI GGNNCC 2 cut(s) 180, 445
BmrFI CCNGG 1 cut(s) 50
BmsI GCATC 2 cut(s) 202, 241
BpiI GAAGAC 1 cut(s) 128
BpuMI CCSGG 1 cut(s) 50
BsaJI CCNNGG 1 cut(s) 48
BsaXI ACNNNNNCTCC 4 cut(s) 29, 59, 287, 317
Bsc4I CCNNNNNNNGG 3 cut(s) 54, 396, 685
Bse3DI GCAATG 2 cut(s) 491, 496
BseDI CCNNGG 1 cut(s) 48
BseGI GGATG 1 cut(s) 230
BseLI CCNNNNNNNGG 3 cut(s) 54, 396, 685
BseMI GCAATG 2 cut(s) 491, 496
BseMII CTCAG 3 cut(s) 9, 302, 675
BseRI GAGGAG 2 cut(s) 45, 707
BseSI GKGCMC 1 cut(s) 447
BseYI CCCAGC 3 cut(s) 97, 182, 446
BsgI GTGCAG 1 cut(s) 543
BshFI GGCC 2 cut(s) 400, 445
BsiSI CCGG 1 cut(s) 50
BslI CCNNNNNNNGG 3 cut(s) 54, 396, 685
BsmAI GTCTC 1 cut(s) 399
BsnI GGCC 2 cut(s) 400, 445
Bsp120I GGGCCC 1 cut(s) 443
Bsp1286I GDGCHC 1 cut(s) 447
Bsp143I GATC 2 cut(s) 352, 463
BspANI GGCC 2 cut(s) 400, 445
BspCNI CTCAG 3 cut(s) 10, 301, 676
BspHI TCATGA 1 cut(s) 430
BspLI GGNNCC 2 cut(s) 180, 445
BspMI ACCTGC 1 cut(s) 416
BspPI GGATC 1 cut(s) 458
BspTI CTTAAG 1 cut(s) 599
BsrDI GCAATG 2 cut(s) 491, 496
BssECI CCNNGG 1 cut(s) 48
BssMI GATC 2 cut(s) 352, 463
BssSI CACGAG 1 cut(s) 276
Bst2BI CACGAG 1 cut(s) 276
Bst4CI ACNGT 2 cut(s) 325, 530
Bst6I CTCTTC 2 cut(s) 378, 420
BstAFI CTTAAG 1 cut(s) 599
BstC8I GCNNGC 1 cut(s) 144
BstDEI CTNAG 3 cut(s) 18, 288, 684
BstF5I GGATG 1 cut(s) 230
BstH2I RGCGCY 1 cut(s) 362
BstHHI GCGC 1 cut(s) 361
BstKTI GATC 2 cut(s) 355, 466
BstMAI GTCTC 1 cut(s) 399
BstMBI GATC 2 cut(s) 352, 463
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstNSI RCATGY 1 cut(s) 275
BstSCI CCNGG 1 cut(s) 48
BstSFI CTRYAG 1 cut(s) 501
BstSLI GKGCMC 1 cut(s) 447
BstV2I GAAGAC 1 cut(s) 128
BstXI CCANNNNNNTGG 1 cut(s) 190
BsuRI GGCC 2 cut(s) 400, 445
BtsCI GGATG 1 cut(s) 230
BtsI GCAGTG 1 cut(s) 193
BtsIMutI CAGTG 2 cut(s) 193, 459
BveI ACCTGC 1 cut(s) 416
Cac8I GCNNGC 1 cut(s) 144
CciI TCATGA 1 cut(s) 430
CfoI GCGC 1 cut(s) 361
Cfr13I GGNCC 2 cut(s) 443, 444
Csp6I GTAC 2 cut(s) 258, 454
CspCI CAANNNNNGTGG 2 cut(s) 306, 341
CviAII CATG 6 cut(s) 232, 272, 391, 431, 440, 610
CviJI RGCY 9 cut(s) 61, 89, 97, 344, 400, 445, 450, 500, 575
CviKI_1 RGCY 9 cut(s) 61, 89, 97, 344, 400, 445, 450, 500, 575
CviQI GTAC 2 cut(s) 258, 454
DdeI CTNAG 3 cut(s) 18, 288, 684
DpnI GATC 2 cut(s) 354, 465
DpnII GATC 2 cut(s) 352, 463
DrdI GACNNNNNNGTC 1 cut(s) 328
DseDI GACNNNNNNGTC 1 cut(s) 328
EaeI YGGCCR 1 cut(s) 398
Eam1104I CTCTTC 2 cut(s) 378, 420
EarI CTCTTC 2 cut(s) 378, 420
Eco24I GRGCYC 1 cut(s) 447
EcoT38I GRGCYC 1 cut(s) 447
FaeI CATG 6 cut(s) 235, 275, 394, 434, 443, 613
FatI CATG 6 cut(s) 231, 271, 390, 430, 439, 609
FblI GTMKAC 1 cut(s) 332
FokI GGATG 1 cut(s) 237
FriOI GRGCYC 1 cut(s) 447
GlaI GCGC 1 cut(s) 360
GsaI CCCAGC 3 cut(s) 101, 186, 450
HaeII RGCGCY 1 cut(s) 362
HaeIII GGCC 2 cut(s) 400, 445
HapII CCGG 1 cut(s) 50
HhaI GCGC 1 cut(s) 361
Hin1II CATG 6 cut(s) 235, 275, 394, 434, 443, 613
Hin6I GCGC 1 cut(s) 359
HinP1I GCGC 1 cut(s) 359
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HinfI GANTC 4 cut(s) 329, 386, 562, 625
HpaI GTTAAC 1 cut(s) 37
HpaII CCGG 1 cut(s) 50
HphI GGTGA 4 cut(s) 323, 383, 389, 634
Hpy166II GTNNAC 4 cut(s) 37, 260, 314, 333
Hpy188I TCNGA 4 cut(s) 224, 291, 517, 685
Hpy188III TCNNGA 1 cut(s) 431
Hpy8I GTNNAC 4 cut(s) 37, 260, 314, 333
HpyAV CCTTC 5 cut(s) 47, 125, 368, 512, 690
HpyCH4III ACNGT 2 cut(s) 325, 530
HpyCH4V TGCA 7 cut(s) 275, 425, 489, 494, 524, 538, 647
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 3 cut(s) 18, 288, 684
Hsp92II CATG 6 cut(s) 235, 275, 394, 434, 443, 613
HspAI GCGC 1 cut(s) 359
KspAI GTTAAC 1 cut(s) 37
Kzo9I GATC 2 cut(s) 352, 463
LpnPI CCDG 9 cut(s) 63, 83, 161, 196, 283, 341, 411, 456, 460
LweI GCATC 2 cut(s) 202, 241
MaeIII GTNAC 1 cut(s) 622
MalI GATC 2 cut(s) 354, 465
MboI GATC 2 cut(s) 352, 463
MboII GAAGA 3 cut(s) 133, 395, 407
MhlI GDGCHC 1 cut(s) 447
MluCI AATT 2 cut(s) 198, 207
MlyI GAGTC 4 cut(s) 338, 395, 556, 619
MnlI CCTC 7 cut(s) 23, 51, 79, 607, 679, 685, 688
MseI TTAA 4 cut(s) 36, 93, 567, 600
MspCI CTTAAG 1 cut(s) 599
MspI CCGG 1 cut(s) 50
MspR9I CCNGG 1 cut(s) 50
MwoI GCNNNNNNNGC 1 cut(s) 86
NciI CCSGG 1 cut(s) 50
NdeII GATC 2 cut(s) 352, 463
NlaIII CATG 6 cut(s) 235, 275, 394, 434, 443, 613
NlaIV GGNNCC 2 cut(s) 180, 445
NmeAIII GCCGAG 1 cut(s) 376
NmuCI GTSAC 1 cut(s) 622
NspI RCATGY 1 cut(s) 275
PagI TCATGA 1 cut(s) 430
PleI GAGTC 4 cut(s) 337, 394, 556, 619
PpsI GAGTC 4 cut(s) 337, 394, 556, 619
PspFI CCCAGC 3 cut(s) 97, 182, 446
PspN4I GGNNCC 2 cut(s) 180, 445
PspOMI GGGCCC 1 cut(s) 443
PspPI GGNCC 2 cut(s) 443, 444
RsaI GTAC 2 cut(s) 259, 455
RsaNI GTAC 2 cut(s) 258, 454
SaqAI TTAA 4 cut(s) 36, 93, 567, 600
Sau3AI GATC 2 cut(s) 352, 463
Sau96I GGNCC 2 cut(s) 443, 444
SchI GAGTC 4 cut(s) 338, 395, 556, 619
ScrFI CCNGG 1 cut(s) 50
SduI GDGCHC 1 cut(s) 447
SfaNI GCATC 2 cut(s) 202, 241
SfcI CTRYAG 1 cut(s) 501
SmlI CTYRAG 1 cut(s) 599
SmoI CTYRAG 1 cut(s) 599
Sse9I AATT 2 cut(s) 198, 207
StyD4I CCNGG 1 cut(s) 48
TaaI ACNGT 2 cut(s) 325, 530
TasI AATT 2 cut(s) 198, 207
TatI WGTACW 1 cut(s) 453
Tru1I TTAA 4 cut(s) 36, 93, 567, 600
Tru9I TTAA 4 cut(s) 36, 93, 567, 600
TscAI CASTG 2 cut(s) 193, 466
TseFI GTSAC 1 cut(s) 622
Tsp45I GTSAC 1 cut(s) 622
TspDTI ATGAA 1 cut(s) 396
TspRI CASTG 2 cut(s) 193, 466
Vha464I CTTAAG 1 cut(s) 599
XceI RCATGY 1 cut(s) 275
XmiI GTMKAC 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.