Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014304

Physical Location & Seq

Genomic Coordinates Reverse (-)

20846872 .. 20849054

Gene Structure 2183 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G55760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGACTGATTCTGCTTACAGAGTAGACACCATTTCTAGACTCGCCCAATGGCGAATCCACAATCTTTCTTCCTCCACTTACCGCAAGTCCGATCCTTTCAAGATGGGTCTTTGGAATTGGCACTTGTCTGTGGAGAAAAGCAAGATGCTATTAAATGTTAAGTTGTATCCAGAGGTATCAAACCTTACCAGAGAAAATCCACCGGTTGCTTCCTTTGCTCTTCGTGTTGTCTCTTCTACTGGTGAGAGAAAGGCTCTATCTCATCCAGAAGTAATAGATAAGCGGATTAAGACAAACGAAGATTTTATTTGGACTATTGAAGTTCCCTTAACTGGGAAAATCATCATCGACGTCGAGTTTCTTGACTTGAAGGTTTTGTCTCAAGATAGTGGAGAACTTTACTCTATCTGGGCCAACGGTTCAACTGAGAATCAATCGCAAGTAACTGCGGTAACATCCCTTGGACGTATGTTGACAGAAAGCATTTACACCGACATAACGATCAATGCCTCTGATGGAAGCATTGGAGCTCACCGAGCAGTTCTCGCTGCCCGTTCACCTGTTTTCCGCAGCATGTTTTTACACGACCTGAAAGAGAAAGAACTATCAGAAATAAACGTACTCGACATGCCACTTGATGCTTGCCAAGCTTTTCTCAGTTATATCTACGGCAATATCCAAAACGAAGACTTTCTTATACACAGATTGGCACTCCTCCAAGCAGCTGAGAAATATGATATTGCTGATTTAAAAGAGGCGTGCCACTTGAGTCTTCTAGACGATATCGACACAAAGAATGTGCTTGAGAGGCTACAGAATGCTTATCTCTATCAATTACCTGAACTGAAGGCTAGCTGCATGAGATATCTTGTGAAGTTTGGCAAAATATTTGAGATCCGAGACGAGTTCAACATATTCATGCAATGCGCAGACAGAGATTTGATTTCTGAAATCTTCCACGAAGTCCTCAGTACCTGGAAAGGATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB

Protein Analysis

329

Amino Acids

37.67

Weight (kDa)

5.46

Isoelectric Point (pI)

37.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	157 - 258	3.2e-20	BTB/POZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0014304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55760
fragaria_vesca	FvH4_3g42042
malus_domestica	MD03G1039200.v1.1 MD11G1039500.v1.1
prunus_persica	Prupe.6G031300_v2.0.a1
pyrus_communis	pycom03g03020 pycom11g03340
rosa_chinensis	RchiOBHm_Chr5g0075261
rosa_laevigata	RLG00000036543
rosa_multiflora	Rmu_sc0000770.1_g000061
rosa_roxburghii	Rroxscaffold_1G00006300
rosa_rugosa	Rorug05G0437900
rosa_samantha	Rh5AG494700 Rh5BG516300 Rh5CG540100 Rh5DG529000
rosa_wichuraiana	Rw5G045900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	354
Acc16I	TGCGCA	1 cut(s)	928
AccI	GTMKAC	1 cut(s)	24
AciI	CCGC	4 cut(s)	82, 283, 449, 568
AclWI	GGATC	2 cut(s)	86, 889
AcuI	CTGAAG	1 cut(s)	866
AcyI	GRCGYC	1 cut(s)	351
AfaI	GTAC	2 cut(s)	621, 973
AfiI	CCNNNNNNNGG	2 cut(s)	332, 333
AgeI	ACCGGT	1 cut(s)	202
AgsI	TTSAA	5 cut(s)	100, 320, 370, 423, 910
AjnI	CCWGG	1 cut(s)	974
AluBI	AGCT	4 cut(s)	530, 650, 725, 855
AluI	AGCT	4 cut(s)	530, 650, 725, 855
Alw21I	GWGCWC	1 cut(s)	532
Alw26I	GTCTC	3 cut(s)	235, 384, 894
AlwI	GGATC	2 cut(s)	86, 889
AlwNI	CAGNNNCTG	1 cut(s)	975
AoxI	GGCC	1 cut(s)	411
ApeKI	GCWGC	4 cut(s)	548, 570, 722, 855
AsiGI	ACCGGT	1 cut(s)	202
Asp700I	GAANNNNTTC	1 cut(s)	690
AspLEI	GCGC	1 cut(s)	929
AspS9I	GGNCC	1 cut(s)	411
AsuHPI	GGTGA	3 cut(s)	254, 524, 549
AsuNHI	GCTAGC	1 cut(s)	851
BanII	GRGCYC	1 cut(s)	532
BbsI	GAAGAC	2 cut(s)	693, 764
Bbv12I	GWGCWC	1 cut(s)	532
BbvI	GCAGC	4 cut(s)	535, 582, 734, 842
BccI	CCATC	2 cut(s)	97, 509
BceAI	ACGGC	1 cut(s)	685
BciT130I	CCWGG	1 cut(s)	976
BciVI	GTATCC	1 cut(s)	177
BcoDI	GTCTC	3 cut(s)	235, 384, 894
BfaI	CTAG	3 cut(s)	36, 776, 852
BfmI	CTRYAG	1 cut(s)	812
BfuI	GTATCC	1 cut(s)	177
BisI	GCNGC	4 cut(s)	549, 571, 723, 856
BlsI	GCNGC	4 cut(s)	550, 572, 724, 857
Bme1390I	CCNGG	1 cut(s)	976
BmgT120I	GGNCC	1 cut(s)	411
BmrFI	CCNGG	1 cut(s)	976
BmrI	ACTGGG	1 cut(s)	342
BmsI	GCATC	2 cut(s)	135, 628
BmtI	GCTAGC	1 cut(s)	855
BmuI	ACTGGG	1 cut(s)	342
BpiI	GAAGAC	2 cut(s)	693, 764
BplI	GAGNNNNNCTC	4 cut(s)	238, 270, 528, 560
BpuEI	CTTGAG	3 cut(s)	366, 787, 824
BsaHI	GRCGYC	1 cut(s)	351
BsaJI	CCNNGG	1 cut(s)	460
BsaWI	WCCGGW	1 cut(s)	202
Bsc4I	CCNNNNNNNGG	2 cut(s)	332, 333
Bse118I	RCCGGY	1 cut(s)	202
Bse1I	ACTGG	2 cut(s)	244, 337
Bse3DI	GCAATG	1 cut(s)	929
BseBI	CCWGG	1 cut(s)	976
BseDI	CCNNGG	1 cut(s)	460
BseGI	GGATG	2 cut(s)	262, 455
BseLI	CCNNNNNNNGG	2 cut(s)	332, 333
BseMI	GCAATG	1 cut(s)	929
BseMII	CTCAG	4 cut(s)	417, 670, 717, 982
BseNI	ACTGG	2 cut(s)	244, 337
BseRI	GAGGAG	1 cut(s)	704
BseXI	GCAGC	4 cut(s)	535, 582, 734, 842
BshFI	GGCC	1 cut(s)	413
BshTI	ACCGGT	1 cut(s)	202
BsiHKAI	GWGCWC	1 cut(s)	532
BsiSI	CCGG	1 cut(s)	203
BslI	CCNNNNNNNGG	2 cut(s)	332, 333
BsmAI	GTCTC	3 cut(s)	235, 384, 894
BsmBI	CGTCTC	1 cut(s)	894
BsmI	GAATGC	1 cut(s)	823
BsnI	GGCC	1 cut(s)	413
Bsp1286I	GDGCHC	1 cut(s)	532
Bsp143I	GATC	3 cut(s)	91, 501, 894
BspACI	CCGC	4 cut(s)	82, 283, 449, 568
BspANI	GGCC	1 cut(s)	413
BspCNI	CTCAG	4 cut(s)	418, 669, 718, 981
BspOI	GCTAGC	1 cut(s)	855
BspPI	GGATC	2 cut(s)	86, 889
BspQI	GCTCTTC	1 cut(s)	225
BsrDI	GCAATG	1 cut(s)	929
BsrFI	RCCGGY	1 cut(s)	202
BsrI	ACTGG	2 cut(s)	244, 337
BssAI	RCCGGY	1 cut(s)	202
BssECI	CCNNGG	1 cut(s)	460
BssMI	GATC	3 cut(s)	91, 501, 894
BssNI	GRCGYC	1 cut(s)	351
BssT1I	CCWWGG	1 cut(s)	460
Bst2UI	CCWGG	1 cut(s)	976
Bst4CI	ACNGT	1 cut(s)	419
Bst6I	CTCTTC	2 cut(s)	225, 238
BstACI	GRCGYC	1 cut(s)	351
BstC8I	GCNNGC	3 cut(s)	643, 760, 853
BstDEI	CTNAG	4 cut(s)	426, 656, 726, 968
BstF5I	GGATG	2 cut(s)	262, 455
BstHHI	GCGC	1 cut(s)	929
BstKTI	GATC	3 cut(s)	94, 504, 897
BstMAI	GTCTC	3 cut(s)	235, 384, 894
BstMBI	GATC	3 cut(s)	91, 501, 894
BstMWI	GCNNNNNNNGC	5 cut(s)	215, 536, 545, 647, 808
BstNI	CCWGG	1 cut(s)	976
BstNSI	RCATGY	2 cut(s)	577, 631
BstSCI	CCNGG	1 cut(s)	974
BstSFI	CTRYAG	1 cut(s)	812
BstV1I	GCAGC	4 cut(s)	535, 582, 734, 842
BstV2I	GAAGAC	2 cut(s)	693, 764
BstX2I	RGATCY	1 cut(s)	894
BstYI	RGATCY	1 cut(s)	894
BsuI	GTATCC	1 cut(s)	177
BsuRI	GGCC	1 cut(s)	413
BtsCI	GGATG	2 cut(s)	262, 455
Cac8I	GCNNGC	3 cut(s)	643, 760, 853
CaiI	CAGNNNCTG	1 cut(s)	975
CfoI	GCGC	1 cut(s)	929
Cfr10I	RCCGGY	1 cut(s)	202
Cfr13I	GGNCC	1 cut(s)	411
Csp6I	GTAC	2 cut(s)	620, 972
CspAI	ACCGGT	1 cut(s)	202
CviAII	CATG	4 cut(s)	574, 628, 859, 919
CviJI	RGCY	8 cut(s)	254, 413, 530, 650, 725, 811, 851, 855
CviKI_1	RGCY	8 cut(s)	254, 413, 530, 650, 725, 811, 851, 855
CviQI	GTAC	2 cut(s)	620, 972
DdeI	CTNAG	4 cut(s)	426, 656, 726, 968
DpnI	GATC	3 cut(s)	93, 503, 896
DpnII	GATC	3 cut(s)	91, 501, 894
DraI	TTTAAA	1 cut(s)	750
Eam1104I	CTCTTC	2 cut(s)	225, 238
EarI	CTCTTC	2 cut(s)	225, 238
Ecl136II	GAGCTC	1 cut(s)	530
Eco130I	CCWWGG	1 cut(s)	460
Eco24I	GRGCYC	1 cut(s)	532
Eco32I	GATATC	2 cut(s)	784, 866
Eco53kI	GAGCTC	1 cut(s)	530
Eco57I	CTGAAG	1 cut(s)	866
EcoICRI	GAGCTC	1 cut(s)	530
EcoRII	CCWGG	1 cut(s)	974
EcoRV	GATATC	2 cut(s)	784, 866
EcoT14I	CCWWGG	1 cut(s)	460
EcoT38I	GRGCYC	1 cut(s)	532
ErhI	CCWWGG	1 cut(s)	460
Esp3I	CGTCTC	1 cut(s)	894
FaeI	CATG	4 cut(s)	577, 631, 862, 922
FalI	AAGNNNNNCTT	2 cut(s)	678, 710
FatI	CATG	4 cut(s)	573, 627, 858, 918
FblI	GTMKAC	1 cut(s)	24
Fnu4HI	GCNGC	4 cut(s)	549, 571, 723, 856
FokI	GGATG	2 cut(s)	249, 442
FriOI	GRGCYC	1 cut(s)	532
Fsp4HI	GCNGC	4 cut(s)	549, 571, 723, 856
FspBI	CTAG	3 cut(s)	36, 776, 852
FspI	TGCGCA	1 cut(s)	928
GlaI	GCGC	1 cut(s)	928
GluI	GCNGC	4 cut(s)	549, 571, 723, 856
HaeIII	GGCC	1 cut(s)	413
HapII	CCGG	1 cut(s)	203
HhaI	GCGC	1 cut(s)	929
Hin1I	GRCGYC	1 cut(s)	351
Hin1II	CATG	4 cut(s)	577, 631, 862, 922
Hin6I	GCGC	1 cut(s)	927
HinP1I	GCGC	1 cut(s)	927
HincII	GTYRAC	1 cut(s)	474
HindII	GTYRAC	1 cut(s)	474
HindIII	AAGCTT	1 cut(s)	648
HinfI	GANTC	5 cut(s)	8, 39, 54, 430, 769
HpaII	CCGG	1 cut(s)	203
HphI	GGTGA	3 cut(s)	254, 524, 549
Hpy166II	GTNNAC	3 cut(s)	25, 474, 557
Hpy188I	TCNGA	5 cut(s)	91, 514, 610, 899, 949
Hpy188III	TCNNGA	7 cut(s)	36, 100, 170, 266, 362, 383, 776
Hpy8I	GTNNAC	3 cut(s)	25, 474, 557
Hpy99I	CGWCG	2 cut(s)	353, 356
HpyAV	CCTTC	2 cut(s)	364, 841
HpyCH4III	ACNGT	1 cut(s)	419
HpyCH4IV	ACGT	3 cut(s)	351, 466, 618
HpyCH4V	TGCA	2 cut(s)	858, 922
HpyF10VI	GCNNNNNNNGC	5 cut(s)	215, 536, 545, 647, 808
HpyF3I	CTNAG	4 cut(s)	426, 656, 726, 968
HpySE526I	ACGT	3 cut(s)	351, 466, 618
Hsp92I	GRCGYC	1 cut(s)	351
Hsp92II	CATG	4 cut(s)	577, 631, 862, 922
HspAI	GCGC	1 cut(s)	927
Kzo9I	GATC	3 cut(s)	91, 501, 894
LguI	GCTCTTC	1 cut(s)	225
LmnI	GCTCC	1 cut(s)	527
Lsp1109I	GCAGC	4 cut(s)	535, 582, 734, 842
LweI	GCATC	2 cut(s)	135, 628
MaeI	CTAG	3 cut(s)	36, 776, 852
MaeII	ACGT	3 cut(s)	351, 466, 618
MaeIII	GTNAC	2 cut(s)	442, 451
MalI	GATC	3 cut(s)	93, 503, 896
MboI	GATC	3 cut(s)	91, 501, 894
MboII	GAAGA	7 cut(s)	60, 212, 225, 311, 698, 764, 946
MflI	RGATCY	1 cut(s)	894
MhlI	GDGCHC	1 cut(s)	532
MluCI	AATT	2 cut(s)	115, 833
MlyI	GAGTC	2 cut(s)	33, 778
MnlI	CCTC	7 cut(s)	82, 166, 520, 725, 748, 801, 977
MroXI	GAANNNNTTC	1 cut(s)	690
MseI	TTAA	5 cut(s)	152, 159, 288, 329, 749
MslI	CAYNNNNRTG	1 cut(s)	917
MspA1I	CMGCKG	1 cut(s)	725
MspI	CCGG	1 cut(s)	203
MspR9I	CCNGG	1 cut(s)	976
Mva1269I	GAATGC	1 cut(s)	823
MvaI	CCWGG	1 cut(s)	976
MwoI	GCNNNNNNNGC	5 cut(s)	215, 536, 545, 647, 808
NdeII	GATC	3 cut(s)	91, 501, 894
NheI	GCTAGC	1 cut(s)	851
NlaIII	CATG	4 cut(s)	577, 631, 862, 922
NsbI	TGCGCA	1 cut(s)	928
NspI	RCATGY	2 cut(s)	577, 631
PciSI	GCTCTTC	1 cut(s)	225
PctI	GAATGC	1 cut(s)	823
PdmI	GAANNNNTTC	1 cut(s)	690
PfeI	GAWTC	3 cut(s)	8, 54, 430
PinAI	ACCGGT	1 cut(s)	202
PkrI	GCNGC	4 cut(s)	550, 572, 724, 857
PleI	GAGTC	2 cut(s)	33, 777
PpsI	GAGTC	2 cut(s)	33, 777
Psp124BI	GAGCTC	1 cut(s)	532
Psp6I	CCWGG	1 cut(s)	974
PspGI	CCWGG	1 cut(s)	974
PspPI	GGNCC	1 cut(s)	411
PstNI	CAGNNNCTG	1 cut(s)	975
PsuI	RGATCY	1 cut(s)	894
PvuII	CAGCTG	1 cut(s)	725
RsaI	GTAC	2 cut(s)	621, 973
RsaNI	GTAC	2 cut(s)	620, 972
RseI	CAYNNNNRTG	1 cut(s)	917
SacI	GAGCTC	1 cut(s)	532
SapI	GCTCTTC	1 cut(s)	225
SaqAI	TTAA	5 cut(s)	152, 159, 288, 329, 749
SatI	GCNGC	4 cut(s)	549, 571, 723, 856
Sau3AI	GATC	3 cut(s)	91, 501, 894
Sau96I	GGNCC	1 cut(s)	411
SchI	GAGTC	2 cut(s)	33, 778
ScrFI	CCNGG	1 cut(s)	976
SduI	GDGCHC	1 cut(s)	532
SfaNI	GCATC	2 cut(s)	135, 628
SfcI	CTRYAG	1 cut(s)	812
SmiMI	CAYNNNNRTG	1 cut(s)	917
SmlI	CTYRAG	3 cut(s)	381, 766, 803
SmoI	CTYRAG	3 cut(s)	381, 766, 803
Sse9I	AATT	2 cut(s)	115, 833
SsiI	CCGC	4 cut(s)	82, 283, 449, 568
SspI	AATATT	1 cut(s)	888
SspMI	CTAG	3 cut(s)	36, 776, 852
SstI	GAGCTC	1 cut(s)	532
StyD4I	CCNGG	1 cut(s)	974
StyI	CCWWGG	1 cut(s)	460
TaaI	ACNGT	1 cut(s)	419
TaiI	ACGT	3 cut(s)	354, 469, 621
TaqI	TCGA	4 cut(s)	348, 354, 624, 786
TasI	AATT	2 cut(s)	115, 833
TfiI	GAWTC	3 cut(s)	8, 54, 430
Tru1I	TTAA	5 cut(s)	152, 159, 288, 329, 749
Tru9I	TTAA	5 cut(s)	152, 159, 288, 329, 749
TseI	GCWGC	4 cut(s)	548, 570, 722, 855
TspDTI	ATGAA	1 cut(s)	907
XbaI	TCTAGA	2 cut(s)	35, 775
XceI	RCATGY	2 cut(s)	577, 631
XmiI	GTMKAC	1 cut(s)	24
XmnI	GAANNNNTTC	1 cut(s)	690
XspI	CTAG	3 cut(s)	36, 776, 852
ZraI	GACGTC	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.