Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0014304

Physical Location & Seq

Genomic Coordinates Forward (+)

3120198 .. 3122276

Gene Structure 2079 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1039200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGAGCGATTCAGCTTACAGAGTCGAAACGACGTCGCGCCTCGCCCAATGGAGGATCGACAACTTGGCTTCCTGCACATACCGAAAGTCCGATCCTTTCAAGATTGGCAAGTGGAATTGGCACTTATCTGTGGAGAAGAACAGAGTGCTGTTTGTTAGATTGTATCCAGAGATATCGAATTTGACGAGAGATAATCCGCCGATTGCTTCGTTTATTATTCGAGTAGTGTGTTCTGTTGGTGATCGAAAGGCCTTAACTCATCCAGAAATTACAAACAAAAAGCTCAAGAGCAATGATGATTTCGTTTGGGCTATTGAGGTTCCCCTAACCGGAAAATTCATCATCGACGTTGAATTCCTTGATTTGAAGACTGCGTCCGGAGAGGGTGGAGAACCTTGCTCCATTTGGGCTGGGGGATTGACGCAAAAGCGATCAAATGCAACTGCTCTTGCATCCCTTAGTCGAATGTTAACAGAAGGCATCCACACGGACATCATGATTAACGTGTCTGATGGAAGCATTGGAGCTCATCGGGCGATTCTTGCTGCTCGATCACCAGTTTTCCAGAGCATGTTTTCACATGACCTCAAGGAGAGAGAACTGTCTACCATAAACATCTCCGATATGTCAATTGAAGCTTGTCAGGCTTTTCTTAATTACATTTATGGGAACATCGGGCATGAAGAATTTCTGACCCACAGGCTGGCACTTCTCCATGCTGCTGATAAGTACGATATCTCTGACCTGAAAGACGCCTGCCATGAAAGTCTTTTGGAAGATATTGATACAAAGAATGTACTCGAGAGGCTCCAAAATGCATCTCTATACCAATTGCCGCGATTGAAAACCAGCTGCATAAGGTACCTTGTGAAGTTTGGAAAGATTTATGACATCCGAGATGATTTCAATGCTTTCTTGCTATGCGCAGACAGGGACTTGGTAGCAGAAATCTTCGCCGAAGTTCTTGGTGCCTGGAAAGGGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB

Protein Analysis

329

Amino Acids

37.07

Weight (kDa)

6.16

Isoelectric Point (pI)

35.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	155 - 259	9.6e-23	BTB/POZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0014304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55760
fragaria_vesca	FvH4_3g42042
malus_domestica	MD03G1039200.v1.1 MD11G1039500.v1.1
prunus_persica	Prupe.6G031300_v2.0.a1
pyrus_communis	pycom03g03020 pycom11g03340
rosa_chinensis	RchiOBHm_Chr5g0075261
rosa_laevigata	RLG00000036543
rosa_multiflora	Rmu_sc0000770.1_g000061
rosa_roxburghii	Rroxscaffold_1G00006300
rosa_rugosa	Rorug05G0437900
rosa_samantha	Rh5AG494700 Rh5BG516300 Rh5CG540100 Rh5DG529000
rosa_wichuraiana	Rw5G045900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	35
Acc16I	TGCGCA	1 cut(s)	925
Acc65I	GGTACC	1 cut(s)	861
AccB1I	GGYRCC	2 cut(s)	861, 968
AccB7I	CCANNNNNTGG	1 cut(s)	703
AccI	GTMKAC	1 cut(s)	605
AccII	CGCG	2 cut(s)	37, 838
AccIII	TCCGGA	1 cut(s)	377
AciI	CCGC	2 cut(s)	197, 836
AclWI	GGATC	2 cut(s)	62, 86
AcsI	RAATTY	4 cut(s)	178, 335, 353, 686
AcyI	GRCGYC	2 cut(s)	32, 753
AfaI	GTAC	3 cut(s)	731, 798, 863
AfiI	CCNNNNNNNGG	4 cut(s)	51, 329, 703, 978
AflIII	ACRYGT	1 cut(s)	504
AgsI	TTSAA	6 cut(s)	100, 353, 367, 635, 844, 907
AjnI	CCWGG	1 cut(s)	971
AluBI	AGCT	5 cut(s)	14, 283, 527, 638, 852
AluI	AGCT	5 cut(s)	14, 283, 527, 638, 852
Alw21I	GWGCWC	1 cut(s)	529
AlwI	GGATC	2 cut(s)	62, 86
Ama87I	CYCGRG	1 cut(s)	800
Aor13HI	TCCGGA	1 cut(s)	377
AoxI	GGCC	1 cut(s)	249
ApeKI	GCWGC	3 cut(s)	545, 719, 852
ApoI	RAATTY	4 cut(s)	178, 335, 353, 686
Asp700I	GAANNNNTTC	2 cut(s)	687, 980
Asp718I	GGTACC	1 cut(s)	861
AspLEI	GCGC	2 cut(s)	39, 926
AsuHPI	GGTGA	2 cut(s)	251, 546
AvaI	CYCGRG	1 cut(s)	800
BanI	GGYRCC	2 cut(s)	861, 968
BanII	GRGCYC	1 cut(s)	529
BbsI	GAAGAC	1 cut(s)	374
Bbv12I	GWGCWC	1 cut(s)	529
BbvI	GCAGC	3 cut(s)	532, 706, 839
BccI	CCATC	1 cut(s)	506
BciT130I	CCWGG	1 cut(s)	973
BciVI	GTATCC	1 cut(s)	174
BfuI	GTATCC	1 cut(s)	174
BisI	GCNGC	4 cut(s)	546, 720, 836, 853
BlsI	GCNGC	4 cut(s)	547, 721, 837, 854
Bme1390I	CCNGG	1 cut(s)	973
BmeT110I	CYCGRG	1 cut(s)	800
BmiI	GGNNCC	4 cut(s)	321, 809, 863, 970
BmrFI	CCNGG	1 cut(s)	973
BmsI	GCATC	3 cut(s)	461, 489, 827
BpiI	GAAGAC	1 cut(s)	374
BpuEI	CTTGAG	2 cut(s)	269, 572
BsaHI	GRCGYC	2 cut(s)	32, 753
BsaWI	WCCGGW	2 cut(s)	329, 377
Bsc4I	CCNNNNNNNGG	4 cut(s)	51, 329, 703, 978
Bse1I	ACTGG	1 cut(s)	557
Bse3DI	GCAATG	1 cut(s)	298
BseAI	TCCGGA	1 cut(s)	377
BseBI	CCWGG	1 cut(s)	973
BseGI	GGATG	4 cut(s)	259, 452, 480, 891
BseLI	CCNNNNNNNGG	4 cut(s)	51, 329, 703, 978
BseMI	GCAATG	1 cut(s)	298
BseNI	ACTGG	1 cut(s)	557
BseXI	GCAGC	3 cut(s)	532, 706, 839
BseYI	CCCAGC	1 cut(s)	410
BsgI	GTGCAG	1 cut(s)	58
Bsh1236I	CGCG	2 cut(s)	37, 838
BshFI	GGCC	1 cut(s)	251
BshNI	GGYRCC	2 cut(s)	861, 968
BsiHKAI	GWGCWC	1 cut(s)	529
BsiHKCI	CYCGRG	1 cut(s)	800
BsiSI	CCGG	2 cut(s)	330, 378
BslFI	GGGAC	1 cut(s)	947
BslI	CCNNNNNNNGG	4 cut(s)	51, 329, 703, 978
BsmFI	GGGAC	1 cut(s)	947
BsnI	GGCC	1 cut(s)	251
BsoBI	CYCGRG	1 cut(s)	800
Bsp1286I	GDGCHC	1 cut(s)	529
Bsp13I	TCCGGA	1 cut(s)	377
Bsp143I	GATC	5 cut(s)	54, 91, 241, 431, 551
BspACI	CCGC	2 cut(s)	197, 836
BspANI	GGCC	1 cut(s)	251
BspEI	TCCGGA	1 cut(s)	377
BspFNI	CGCG	2 cut(s)	37, 838
BspHI	TCATGA	1 cut(s)	495
BspLI	GGNNCC	4 cut(s)	321, 809, 863, 970
BspPI	GGATC	2 cut(s)	62, 86
BspT107I	GGYRCC	2 cut(s)	861, 968
BsrDI	GCAATG	1 cut(s)	298
BsrI	ACTGG	1 cut(s)	557
BssMI	GATC	5 cut(s)	54, 91, 241, 431, 551
BssNI	GRCGYC	2 cut(s)	32, 753
Bst2UI	CCWGG	1 cut(s)	973
Bst4CI	ACNGT	1 cut(s)	603
BstACI	GRCGYC	2 cut(s)	32, 753
BstC8I	GCNNGC	2 cut(s)	705, 757
BstDEI	CTNAG	1 cut(s)	458
BstF5I	GGATG	4 cut(s)	259, 452, 480, 891
BstFNI	CGCG	2 cut(s)	37, 838
BstHHI	GCGC	2 cut(s)	39, 926
BstKTI	GATC	5 cut(s)	57, 94, 244, 434, 554
BstMBI	GATC	5 cut(s)	54, 91, 241, 431, 551
BstMWI	GCNNNNNNNGC	3 cut(s)	533, 542, 644
BstNI	CCWGG	1 cut(s)	973
BstNSI	RCATGY	1 cut(s)	574
BstSCI	CCNGG	1 cut(s)	971
BstUI	CGCG	2 cut(s)	37, 838
BstV1I	GCAGC	3 cut(s)	532, 706, 839
BstV2I	GAAGAC	1 cut(s)	374
BsuI	GTATCC	1 cut(s)	174
BsuRI	GGCC	1 cut(s)	251
BtsCI	GGATG	4 cut(s)	259, 452, 480, 891
Cac8I	GCNNGC	2 cut(s)	705, 757
CciI	TCATGA	1 cut(s)	495
CfoI	GCGC	2 cut(s)	39, 926
CseI	GACGC	3 cut(s)	363, 430, 761
Csp6I	GTAC	3 cut(s)	730, 797, 862
CviAII	CATG	6 cut(s)	496, 571, 581, 680, 716, 761
CviQI	GTAC	3 cut(s)	730, 797, 862
DdeI	CTNAG	1 cut(s)	458
DpnI	GATC	5 cut(s)	56, 93, 243, 433, 553
DpnII	GATC	5 cut(s)	54, 91, 241, 431, 551
EciI	GGCGGA	1 cut(s)	186
Ecl136II	GAGCTC	1 cut(s)	527
Eco147I	AGGCCT	1 cut(s)	251
Eco24I	GRGCYC	1 cut(s)	529
Eco32I	GATATC	2 cut(s)	174, 736
Eco53kI	GAGCTC	1 cut(s)	527
Eco88I	CYCGRG	1 cut(s)	800
EcoICRI	GAGCTC	1 cut(s)	527
EcoRI	GAATTC	1 cut(s)	353
EcoRII	CCWGG	1 cut(s)	971
EcoRV	GATATC	2 cut(s)	174, 736
EcoT22I	ATGCAT	1 cut(s)	820
EcoT38I	GRGCYC	1 cut(s)	529
FaeI	CATG	6 cut(s)	499, 574, 584, 683, 719, 764
FaqI	GGGAC	1 cut(s)	947
FatI	CATG	6 cut(s)	495, 570, 580, 679, 715, 760
FblI	GTMKAC	1 cut(s)	605
Fnu4HI	GCNGC	4 cut(s)	546, 720, 836, 853
FokI	GGATG	4 cut(s)	246, 439, 467, 878
FriOI	GRGCYC	1 cut(s)	529
Fsp4HI	GCNGC	4 cut(s)	546, 720, 836, 853
FspI	TGCGCA	1 cut(s)	925
GlaI	GCGC	2 cut(s)	38, 925
GluI	GCNGC	4 cut(s)	546, 720, 836, 853
GsaI	CCCAGC	1 cut(s)	414
HaeIII	GGCC	1 cut(s)	251
HapII	CCGG	2 cut(s)	330, 378
HgaI	GACGC	3 cut(s)	363, 430, 761
HhaI	GCGC	2 cut(s)	39, 926
Hin1I	GRCGYC	2 cut(s)	32, 753
Hin1II	CATG	6 cut(s)	499, 574, 584, 683, 719, 764
Hin6I	GCGC	2 cut(s)	37, 924
HinP1I	GCGC	2 cut(s)	37, 924
HincII	GTYRAC	1 cut(s)	471
HindII	GTYRAC	1 cut(s)	471
HindIII	AAGCTT	1 cut(s)	636
HinfI	GANTC	3 cut(s)	8, 21, 538
HpaI	GTTAAC	1 cut(s)	471
HpaII	CCGG	2 cut(s)	330, 378
HphI	GGTGA	2 cut(s)	251, 546
Hpy166II	GTNNAC	2 cut(s)	471, 606
Hpy188I	TCNGA	7 cut(s)	91, 511, 622, 693, 742, 896, 986
Hpy188III	TCNNGA	8 cut(s)	100, 167, 263, 286, 378, 496, 565, 802
Hpy8I	GTNNAC	2 cut(s)	471, 606
Hpy99I	CGWCG	3 cut(s)	34, 37, 350
HpyAV	CCTTC	1 cut(s)	470
HpyCH4III	ACNGT	1 cut(s)	603
HpyCH4IV	ACGT	3 cut(s)	32, 348, 504
HpyCH4V	TGCA	5 cut(s)	75, 440, 452, 818, 855
HpyF10VI	GCNNNNNNNGC	3 cut(s)	533, 542, 644
HpyF3I	CTNAG	1 cut(s)	458
HpySE526I	ACGT	3 cut(s)	32, 348, 504
Hsp92I	GRCGYC	2 cut(s)	32, 753
Hsp92II	CATG	6 cut(s)	499, 574, 584, 683, 719, 764
HspAI	GCGC	2 cut(s)	37, 924
Kpn2I	TCCGGA	1 cut(s)	377
KpnI	GGTACC	1 cut(s)	865
KspAI	GTTAAC	1 cut(s)	471
Kzo9I	GATC	5 cut(s)	54, 91, 241, 431, 551
LmnI	GCTCC	3 cut(s)	404, 524, 813
Lsp1109I	GCAGC	3 cut(s)	532, 706, 839
LweI	GCATC	3 cut(s)	461, 489, 827
MaeII	ACGT	3 cut(s)	32, 348, 504
MalI	GATC	5 cut(s)	56, 93, 243, 433, 553
MboI	GATC	5 cut(s)	54, 91, 241, 431, 551
MboII	GAAGA	5 cut(s)	148, 379, 695, 788, 943
MfeI	CAATTG	2 cut(s)	630, 830
MhlI	GDGCHC	1 cut(s)	529
MluCI	AATT	9 cut(s)	115, 178, 267, 335, 353, 630, 655, 686, 830
MlyI	GAGTC	1 cut(s)	30
MnlI	CCTC	6 cut(s)	45, 50, 310, 376, 596, 798
Mph1103I	ATGCAT	1 cut(s)	820
MroI	TCCGGA	1 cut(s)	377
MroXI	GAANNNNTTC	2 cut(s)	687, 980
MseI	TTAA	4 cut(s)	254, 470, 501, 654
MspA1I	CMGCKG	1 cut(s)	852
MspI	CCGG	2 cut(s)	330, 378
MspR9I	CCNGG	1 cut(s)	973
MunI	CAATTG	2 cut(s)	630, 830
MvaI	CCWGG	1 cut(s)	973
MvnI	CGCG	2 cut(s)	37, 838
MwoI	GCNNNNNNNGC	3 cut(s)	533, 542, 644
NdeII	GATC	5 cut(s)	54, 91, 241, 431, 551
NlaIII	CATG	6 cut(s)	499, 574, 584, 683, 719, 764
NlaIV	GGNNCC	4 cut(s)	321, 809, 863, 970
NsbI	TGCGCA	1 cut(s)	925
NsiI	ATGCAT	1 cut(s)	820
NspI	RCATGY	1 cut(s)	574
PaeR7I	CTCGAG	1 cut(s)	800
PagI	TCATGA	1 cut(s)	495
PceI	AGGCCT	1 cut(s)	251
PcsI	WCGNNNNNNNCGW	1 cut(s)	182
PdmI	GAANNNNTTC	2 cut(s)	687, 980
PfeI	GAWTC	2 cut(s)	8, 538
PflFI	GACNNNGTC	1 cut(s)	373
PflMI	CCANNNNNTGG	1 cut(s)	703
PkrI	GCNGC	4 cut(s)	547, 721, 837, 854
PleI	GAGTC	1 cut(s)	29
PpsI	GAGTC	1 cut(s)	29
Psp124BI	GAGCTC	1 cut(s)	529
Psp6I	CCWGG	1 cut(s)	971
PspFI	CCCAGC	1 cut(s)	410
PspGI	CCWGG	1 cut(s)	971
PspN4I	GGNNCC	4 cut(s)	321, 809, 863, 970
PsyI	GACNNNGTC	1 cut(s)	373
PvuII	CAGCTG	1 cut(s)	852
RsaI	GTAC	3 cut(s)	731, 798, 863
RsaNI	GTAC	3 cut(s)	730, 797, 862
SacI	GAGCTC	1 cut(s)	529
SaqAI	TTAA	4 cut(s)	254, 470, 501, 654
SatI	GCNGC	4 cut(s)	546, 720, 836, 853
Sau3AI	GATC	5 cut(s)	54, 91, 241, 431, 551
SchI	GAGTC	1 cut(s)	30
ScrFI	CCNGG	1 cut(s)	973
SduI	GDGCHC	1 cut(s)	529
SfaNI	GCATC	3 cut(s)	461, 489, 827
Sfr274I	CTCGAG	1 cut(s)	800
SlaI	CTCGAG	1 cut(s)	800
SmlI	CTYRAG	3 cut(s)	284, 587, 800
SmoI	CTYRAG	3 cut(s)	284, 587, 800
Sse9I	AATT	9 cut(s)	115, 178, 267, 335, 353, 630, 655, 686, 830
SseBI	AGGCCT	1 cut(s)	251
SsiI	CCGC	2 cut(s)	197, 836
SstI	GAGCTC	1 cut(s)	529
StuI	AGGCCT	1 cut(s)	251
StyD4I	CCNGG	1 cut(s)	971
TaaI	ACNGT	1 cut(s)	603
TaiI	ACGT	3 cut(s)	35, 351, 507
TaqI	TCGA	9 cut(s)	24, 57, 176, 220, 244, 345, 463, 550, 801
TasI	AATT	9 cut(s)	115, 178, 267, 335, 353, 630, 655, 686, 830
TatI	WGTACW	1 cut(s)	796
TauI	GCSGC	1 cut(s)	838
TfiI	GAWTC	2 cut(s)	8, 538
Tru1I	TTAA	4 cut(s)	254, 470, 501, 654
Tru9I	TTAA	4 cut(s)	254, 470, 501, 654
TseI	GCWGC	3 cut(s)	545, 719, 852
TspDTI	ATGAA	3 cut(s)	328, 696, 777
TspGWI	ACGGA	1 cut(s)	503
Tth111I	GACNNNGTC	1 cut(s)	373
Van91I	CCANNNNNTGG	1 cut(s)	703
XapI	RAATTY	4 cut(s)	178, 335, 353, 686
XceI	RCATGY	1 cut(s)	574
XhoI	CTCGAG	1 cut(s)	800
XmiI	GTMKAC	1 cut(s)	605
XmnI	GAANNNNTTC	2 cut(s)	687, 980
ZraI	GACGTC	1 cut(s)	33
Zsp2I	ATGCAT	1 cut(s)	820

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.