Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0014304

Physical Location & Seq

Genomic Coordinates Reverse (-)

84146945 .. 84148947

Gene Structure 2003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG494700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGAGTGATTCAGCTTACAGAGTCGAAACGACGTCGCGCCTCGCGCAATGGAGGATCGACAACTTGGCTTCCTGCACCTATAGGAAATCTGATCCTTTCAAGATTGGCAAGTGGAATTGGCACCTATCTGTAGAGAAGAACAAAGTATTGTTTGTGAAATTGTATCCAGAGGTATCAAATTTAACTAGAGAAAACCCTCCCATTGCATCTTTCGTCATTCGAGTGGTCTGTTCTGTGGGTGATCGCAAAGCCTTAACTCATCCAGAAATTACAGATAAACAGCTCAAAACCAATGAGGATTTTGTTTGGGGAATTGAAGTTCCCTTAACGGGAAAATTCATCATAGATGTTGAATTCCTTGATTTGAAAACTTTCCCTCGAGACGGTGGAGAACCTTCTTCCATCTGGGCTGAAGGATTGACACAAAAACGATCGCATGCAAAAGCTCTCGCATCGCTCAGTCGAATGTTAAAAGAAGGCATCCACACGGATATTATAATAAATGCATCCCATGGAAGCATTGGTGCTCATCGTGCAGTTCTTGCTGCAAGATCACCTGTTTTCCAGAGCATGTTTTCACACGACCTCAAAGAAAAAGAACGCTCCACCATAGACATATGTGACATGTCAATTGATGCTTGTCAAGCTTTTCTAAATTATATGTATGGGAACATCGGGCAAGAAGAATTTCTGACTCACAGACTGGCACTTCTACGTGCTGCTGATAAGTATGACATCTCCGACCTCAAAGATGCATGCCATGAGAGCTTATTGGAGGATATTGATGCAAAGAATGTGCTTGATAGGCTCCAAAATGCATCTCTATATGAACTGCCGAGATTGAAAACAAGCTGCATGCGGTATCTTGTGAAGTTTGGTAAGATATTTGACATCCGCGATGATTTCAATGCATTCTTGCTATGCGCAGATAGGGAATTGATAGCGGAAATCTTCCATGAAGTTCTTAATGCCTGGAAAGGTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB

Protein Analysis

328

Amino Acids

37.44

Weight (kDa)

6.38

Isoelectric Point (pI)

39.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	155 - 259	6.7e-23	BTB/POZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55760
fragaria_vesca	FvH4_3g42042
malus_domestica	MD03G1039200.v1.1 MD11G1039500.v1.1
prunus_persica	Prupe.6G031300_v2.0.a1
pyrus_communis	pycom03g03020 pycom11g03340
rosa_chinensis	RchiOBHm_Chr5g0075261
rosa_laevigata	RLG00000036543
rosa_multiflora	Rmu_sc0000770.1_g000061
rosa_roxburghii	Rroxscaffold_1G00006300
rosa_rugosa	Rorug05G0437900
rosa_samantha	Rh5AG494700 Rh5BG516300 Rh5CG540100 Rh5DG529000
rosa_wichuraiana	Rw5G045900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	497
AatII	GACGTC	1 cut(s)	35
Acc16I	TGCGCA	1 cut(s)	925
AccB1I	GGYRCC	1 cut(s)	120
AccII	CGCG	3 cut(s)	37, 44, 897
AciI	CCGC	3 cut(s)	859, 895, 944
AclWI	GGATC	2 cut(s)	62, 86
AcsI	RAATTY	4 cut(s)	178, 335, 353, 686
AcuI	CTGAAG	1 cut(s)	432
AcyI	GRCGYC	1 cut(s)	32
AfiI	CCNNNNNNNGG	2 cut(s)	329, 383
AflIII	ACRYGT	1 cut(s)	624
AgsI	TTSAA	6 cut(s)	100, 317, 353, 367, 844, 907
AjnI	CCWGG	1 cut(s)	971
AloI	GAACNNNNNNTCC	2 cut(s)	303, 335
AluBI	AGCT	6 cut(s)	14, 283, 446, 647, 768, 852
AluI	AGCT	6 cut(s)	14, 283, 446, 647, 768, 852
Alw21I	GWGCWC	1 cut(s)	529
Alw26I	GTCTC	1 cut(s)	375
AlwI	GGATC	2 cut(s)	62, 86
Ama87I	CYCGRG	1 cut(s)	378
ApeKI	GCWGC	3 cut(s)	545, 719, 852
ApoI	RAATTY	4 cut(s)	178, 335, 353, 686
Asp700I	GAANNNNTTC	3 cut(s)	371, 687, 980
AspLEI	GCGC	3 cut(s)	39, 46, 926
AsuHPI	GGTGA	2 cut(s)	251, 546
AvaI	CYCGRG	1 cut(s)	378
BanI	GGYRCC	1 cut(s)	120
Bbv12I	GWGCWC	1 cut(s)	529
BbvI	GCAGC	3 cut(s)	532, 706, 839
BccI	CCATC	1 cut(s)	410
BciT130I	CCWGG	1 cut(s)	973
BciVI	GTATCC	1 cut(s)	174
BcoDI	GTCTC	1 cut(s)	375
BfaI	CTAG	1 cut(s)	186
BfmI	CTRYAG	2 cut(s)	79, 129
BfuI	GTATCC	1 cut(s)	174
BisI	GCNGC	3 cut(s)	546, 720, 853
BlsI	GCNGC	3 cut(s)	547, 721, 854
Bme1390I	CCNGG	1 cut(s)	973
BmeT110I	CYCGRG	1 cut(s)	378
BmiI	GGNNCC	2 cut(s)	122, 809
BmrFI	CCNGG	1 cut(s)	973
BmsI	GCATC	8 cut(s)	215, 461, 489, 515, 625, 742, 775, 827
BsaAI	YACGTR	1 cut(s)	716
BsaHI	GRCGYC	1 cut(s)	32
BsaJI	CCNNGG	1 cut(s)	511
Bsc4I	CCNNNNNNNGG	2 cut(s)	329, 383
Bse1I	ACTGG	1 cut(s)	708
Bse3DI	GCAATG	2 cut(s)	53, 201
BseBI	CCWGG	1 cut(s)	973
BseDI	CCNNGG	1 cut(s)	511
BseGI	GGATG	4 cut(s)	259, 480, 506, 891
BseLI	CCNNNNNNNGG	2 cut(s)	329, 383
BseMI	GCAATG	2 cut(s)	53, 201
BseMII	CTCAG	1 cut(s)	472
BseNI	ACTGG	1 cut(s)	708
BseXI	GCAGC	3 cut(s)	532, 706, 839
BsgI	GTGCAG	2 cut(s)	58, 555
Bsh1236I	CGCG	3 cut(s)	37, 44, 897
Bsh1285I	CGRYCG	1 cut(s)	434
BshNI	GGYRCC	1 cut(s)	120
BsiEI	CGRYCG	1 cut(s)	434
BsiHKAI	GWGCWC	1 cut(s)	529
BsiHKCI	CYCGRG	1 cut(s)	378
BslI	CCNNNNNNNGG	2 cut(s)	329, 383
BsmAI	GTCTC	1 cut(s)	375
BsmBI	CGTCTC	1 cut(s)	375
BsmI	GAATGC	1 cut(s)	911
BsoBI	CYCGRG	1 cut(s)	378
Bsp1286I	GDGCHC	1 cut(s)	529
Bsp143I	GATC	5 cut(s)	54, 91, 241, 431, 551
Bsp19I	CCATGG	1 cut(s)	511
BspACI	CCGC	3 cut(s)	859, 895, 944
BspCNI	CTCAG	1 cut(s)	471
BspFNI	CGCG	3 cut(s)	37, 44, 897
BspLI	GGNNCC	2 cut(s)	122, 809
BspPI	GGATC	2 cut(s)	62, 86
BspT107I	GGYRCC	1 cut(s)	120
BsrDI	GCAATG	2 cut(s)	53, 201
BsrI	ACTGG	1 cut(s)	708
BssECI	CCNNGG	1 cut(s)	511
BssMI	GATC	5 cut(s)	54, 91, 241, 431, 551
BssNI	GRCGYC	1 cut(s)	32
BssT1I	CCWWGG	1 cut(s)	511
Bst2UI	CCWGG	1 cut(s)	973
Bst4CI	ACNGT	1 cut(s)	386
BstACI	GRCGYC	1 cut(s)	32
BstAPI	GCANNNNNTGC	1 cut(s)	542
BstBAI	YACGTR	1 cut(s)	716
BstC8I	GCNNGC	3 cut(s)	438, 757, 857
BstDEI	CTNAG	1 cut(s)	458
BstDSI	CCRYGG	1 cut(s)	511
BstF5I	GGATG	4 cut(s)	259, 480, 506, 891
BstFNI	CGCG	3 cut(s)	37, 44, 897
BstHHI	GCGC	3 cut(s)	39, 46, 926
BstKTI	GATC	5 cut(s)	57, 94, 244, 434, 554
BstMAI	GTCTC	1 cut(s)	375
BstMBI	GATC	5 cut(s)	54, 91, 241, 431, 551
BstMCI	CGRYCG	1 cut(s)	434
BstMWI	GCNNNNNNNGC	6 cut(s)	43, 533, 542, 644, 765, 805
BstNI	CCWGG	1 cut(s)	973
BstNSI	RCATGY	5 cut(s)	440, 574, 628, 759, 859
BstSCI	CCNGG	1 cut(s)	971
BstSFI	CTRYAG	2 cut(s)	79, 129
BstUI	CGCG	3 cut(s)	37, 44, 897
BstV1I	GCAGC	3 cut(s)	532, 706, 839
BsuI	GTATCC	1 cut(s)	174
BtgI	CCRYGG	1 cut(s)	511
BtgZI	GCGATG	2 cut(s)	438, 912
BtsCI	GGATG	4 cut(s)	259, 480, 506, 891
Cac8I	GCNNGC	3 cut(s)	438, 757, 857
CfoI	GCGC	3 cut(s)	39, 46, 926
CviAII	CATG	8 cut(s)	437, 512, 571, 625, 756, 761, 856, 956
DdeI	CTNAG	1 cut(s)	458
DpnI	GATC	5 cut(s)	56, 93, 243, 433, 553
DpnII	GATC	5 cut(s)	54, 91, 241, 431, 551
Eco130I	CCWWGG	1 cut(s)	511
Eco57I	CTGAAG	1 cut(s)	432
Eco88I	CYCGRG	1 cut(s)	378
EcoRI	GAATTC	1 cut(s)	353
EcoRII	CCWGG	1 cut(s)	971
EcoT14I	CCWWGG	1 cut(s)	511
EcoT22I	ATGCAT	4 cut(s)	508, 757, 820, 913
ErhI	CCWWGG	1 cut(s)	511
Esp3I	CGTCTC	1 cut(s)	375
FaeI	CATG	8 cut(s)	440, 515, 574, 628, 759, 764, 859, 959
FatI	CATG	8 cut(s)	436, 511, 570, 624, 755, 760, 855, 955
FauNDI	CATATG	1 cut(s)	617
Fnu4HI	GCNGC	3 cut(s)	546, 720, 853
FokI	GGATG	4 cut(s)	246, 467, 493, 878
Fsp4HI	GCNGC	3 cut(s)	546, 720, 853
FspBI	CTAG	1 cut(s)	186
FspI	TGCGCA	1 cut(s)	925
GlaI	GCGC	3 cut(s)	38, 45, 925
GluI	GCNGC	3 cut(s)	546, 720, 853
HhaI	GCGC	3 cut(s)	39, 46, 926
Hin1I	GRCGYC	1 cut(s)	32
Hin1II	CATG	8 cut(s)	440, 515, 574, 628, 759, 764, 859, 959
Hin6I	GCGC	3 cut(s)	37, 44, 924
HinP1I	GCGC	3 cut(s)	37, 44, 924
HindIII	AAGCTT	1 cut(s)	645
HinfI	GANTC	3 cut(s)	8, 21, 694
HphI	GGTGA	2 cut(s)	251, 546
Hpy188I	TCNGA	4 cut(s)	91, 693, 742, 986
Hpy188III	TCNNGA	5 cut(s)	100, 167, 263, 380, 565
Hpy99I	CGWCG	2 cut(s)	34, 37
HpyAV	CCTTC	3 cut(s)	405, 407, 470
HpyCH4III	ACNGT	1 cut(s)	386
HpyCH4IV	ACGT	2 cut(s)	32, 715
HpyF10VI	GCNNNNNNNGC	6 cut(s)	43, 533, 542, 644, 765, 805
HpyF3I	CTNAG	1 cut(s)	458
HpySE526I	ACGT	2 cut(s)	32, 715
Hsp92I	GRCGYC	1 cut(s)	32
Hsp92II	CATG	8 cut(s)	440, 515, 574, 628, 759, 764, 859, 959
HspAI	GCGC	3 cut(s)	37, 44, 924
Kzo9I	GATC	5 cut(s)	54, 91, 241, 431, 551
LmnI	GCTCC	2 cut(s)	608, 813
LpnPI	CCDG	8 cut(s)	85, 180, 276, 391, 570, 578, 689, 958
Lsp1109I	GCAGC	3 cut(s)	532, 706, 839
LweI	GCATC	8 cut(s)	215, 461, 489, 515, 625, 742, 775, 827
MaeI	CTAG	1 cut(s)	186
MaeII	ACGT	2 cut(s)	32, 715
MaeIII	GTNAC	1 cut(s)	620
MalI	GATC	5 cut(s)	56, 93, 243, 433, 553
MboI	GATC	5 cut(s)	54, 91, 241, 431, 551
MboII	GAAGA	4 cut(s)	148, 390, 695, 943
MfeI	CAATTG	1 cut(s)	630
MhlI	GDGCHC	1 cut(s)	529
MlyI	GAGTC	2 cut(s)	30, 688
MmeI	TCCRAC	1 cut(s)	765
MnlI	CCTC	9 cut(s)	45, 50, 163, 207, 289, 387, 596, 755, 769
Mph1103I	ATGCAT	4 cut(s)	508, 757, 820, 913
MroXI	GAANNNNTTC	3 cut(s)	371, 687, 980
MseI	TTAA	5 cut(s)	182, 254, 326, 470, 966
MslI	CAYNNNNRTG	1 cut(s)	221
MspR9I	CCNGG	1 cut(s)	973
MunI	CAATTG	1 cut(s)	630
Mva1269I	GAATGC	1 cut(s)	911
MvaI	CCWGG	1 cut(s)	973
MvnI	CGCG	3 cut(s)	37, 44, 897
MwoI	GCNNNNNNNGC	6 cut(s)	43, 533, 542, 644, 765, 805
NcoI	CCATGG	1 cut(s)	511
NdeI	CATATG	1 cut(s)	617
NdeII	GATC	5 cut(s)	54, 91, 241, 431, 551
NlaIII	CATG	8 cut(s)	440, 515, 574, 628, 759, 764, 859, 959
NlaIV	GGNNCC	2 cut(s)	122, 809
NmeAIII	GCCGAG	1 cut(s)	861
NmuCI	GTSAC	1 cut(s)	620
NsbI	TGCGCA	1 cut(s)	925
NsiI	ATGCAT	4 cut(s)	508, 757, 820, 913
NspI	RCATGY	5 cut(s)	440, 574, 628, 759, 859
PaeI	GCATGC	3 cut(s)	440, 759, 859
PaeR7I	CTCGAG	1 cut(s)	378
PciI	ACATGT	1 cut(s)	624
PctI	GAATGC	1 cut(s)	911
PdmI	GAANNNNTTC	3 cut(s)	371, 687, 980
PfeI	GAWTC	1 cut(s)	8
PkrI	GCNGC	3 cut(s)	547, 721, 854
Ple19I	CGATCG	1 cut(s)	434
PleI	GAGTC	2 cut(s)	29, 688
PpsI	GAGTC	2 cut(s)	29, 688
Ppu21I	YACGTR	1 cut(s)	716
PscI	ACATGT	1 cut(s)	624
PsiI	TTATAA	1 cut(s)	497
Psp6I	CCWGG	1 cut(s)	971
PspGI	CCWGG	1 cut(s)	971
PspN4I	GGNNCC	2 cut(s)	122, 809
PvuI	CGATCG	1 cut(s)	434
RseI	CAYNNNNRTG	1 cut(s)	221
SaqAI	TTAA	5 cut(s)	182, 254, 326, 470, 966
SatI	GCNGC	3 cut(s)	546, 720, 853
Sau3AI	GATC	5 cut(s)	54, 91, 241, 431, 551
SchI	GAGTC	2 cut(s)	30, 688
ScrFI	CCNGG	1 cut(s)	973
SduI	GDGCHC	1 cut(s)	529
SfaNI	GCATC	8 cut(s)	215, 461, 489, 515, 625, 742, 775, 827
SfcI	CTRYAG	2 cut(s)	79, 129
Sfr274I	CTCGAG	1 cut(s)	378
SlaI	CTCGAG	1 cut(s)	378
SmiMI	CAYNNNNRTG	1 cut(s)	221
SmlI	CTYRAG	1 cut(s)	378
SmoI	CTYRAG	1 cut(s)	378
SphI	GCATGC	3 cut(s)	440, 759, 859
SsiI	CCGC	3 cut(s)	859, 895, 944
SspMI	CTAG	1 cut(s)	186
StyD4I	CCNGG	1 cut(s)	971
StyI	CCWWGG	1 cut(s)	511
TaaI	ACNGT	1 cut(s)	386
TaiI	ACGT	2 cut(s)	35, 718
TaqI	TCGA	5 cut(s)	24, 57, 220, 379, 463
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	5 cut(s)	182, 254, 326, 470, 966
Tru9I	TTAA	5 cut(s)	182, 254, 326, 470, 966
TseFI	GTSAC	1 cut(s)	620
TseI	GCWGC	3 cut(s)	545, 719, 852
Tsp45I	GTSAC	1 cut(s)	620
TspDTI	ATGAA	3 cut(s)	328, 843, 972
TspGWI	ACGGA	1 cut(s)	503
XapI	RAATTY	4 cut(s)	178, 335, 353, 686
XceI	RCATGY	5 cut(s)	440, 574, 628, 759, 859
XcmI	CCANNNNNNNNNTGG	1 cut(s)	518
XhoI	CTCGAG	1 cut(s)	378
XmnI	GAANNNNTTC	3 cut(s)	371, 687, 980
XspI	CTAG	1 cut(s)	186
ZraI	GACGTC	1 cut(s)	33
Zsp2I	ATGCAT	4 cut(s)	508, 757, 820, 913

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.