Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0014304

Physical Location & Seq

Genomic Coordinates Forward (+)

2428534 .. 2431036

Gene Structure 2503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G031300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGAGCGATTCAGCTTACAGAGTCGAAACAACGTCGCGTCTCGCCCAATGGAGAATCGACAACTTGGCTTCCTGCACCTACCGCAAATCCGATCCTTTCAAGATTGGCAAGTGGAATTGGCACTTGTCTCTAGAGAAGAACAGGGTGTTGTATGTAAAATTGTATCCAGAGATATCGAATTTAACTAGAGATAATCCACCGATTGCTTCTTTTATTATTCGAGTGGTCTGTTCTGTGGGTGATCGCAAGACCTTAACTCATCCAGAAATTAAAAACAAAAAGCTCAAGAGCAATGAGGATTTTGTTTGGGCAATTGAGGTTCCCTTAACTGGAAAATTCATCATAGACGTTGAATTCCTTGATTTGAAGACTGAGTCCGGAGACAGTGGAGAACCTTGCTCCATCTGGGCTGAAGGATTGACGCAAAAGCGATCCAATGCAACAGCTCTTGTGTCCCTTGGTCGAATGTTAACAGAAGGCATCCACACCGACATCATGATTAACGTGTCTGATGGAAGTATTGGAGCTCATCGGGCAATTCTTGCTGCAAGATCACCTGTTTTCCGTAGCATGTTTTCGCATGACCTCAAAGAGAAGGAACTGTCCACCATAAACATCTCTGATATGTCAATTGATGCTTGTCAGGCTTTTCTTAATTACATTTATGGGAACATCGGACATGAAGAATTCCTGACTAACAGGCTTGCCCTTCTCCATGCTGCTGATAAGTATGACATCTCTGACCTGAAAGATGCATGCCATGAGAGTCTTTTGGAAGATATTGATGCAAAGAATGTACTTGAGAGGCTCCAAAATGCATCTCTATATCAATTGCCGCGACTGAAAACCAGCTGCATGCGGTATCTTGTGAAGTTTGGTAAGATATATGACATCCAAGACGATTTCAATGCCTTTTTGCTAAGTGCAGACAGGGACTTGATAGCAGAAATCTTCCATGAAGTTCTTAATGCCTGGAAAGGTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB

Protein Analysis

329

Amino Acids

37.33

Weight (kDa)

6.02

Isoelectric Point (pI)

36.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55760
fragaria_vesca	FvH4_3g42042
malus_domestica	MD03G1039200.v1.1 MD11G1039500.v1.1
prunus_persica	Prupe.6G031300_v2.0.a1
pyrus_communis	pycom03g03020 pycom11g03340
rosa_chinensis	RchiOBHm_Chr5g0075261
rosa_laevigata	RLG00000036543
rosa_multiflora	Rmu_sc0000770.1_g000061
rosa_roxburghii	Rroxscaffold_1G00006300
rosa_rugosa	Rorug05G0437900
rosa_samantha	Rh5AG494700 Rh5BG516300 Rh5CG540100 Rh5DG529000
rosa_wichuraiana	Rw5G045900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	37, 838
AccIII	TCCGGA	1 cut(s)	377
AciI	CCGC	3 cut(s)	82, 836, 859
AclWI	GGATC	2 cut(s)	86, 426
AcsI	RAATTY	4 cut(s)	178, 335, 353, 686
AcuI	CTGAAG	1 cut(s)	432
AfaI	GTAC	1 cut(s)	798
AfiI	CCNNNNNNNGG	1 cut(s)	329
AflIII	ACRYGT	1 cut(s)	504
AgsI	TTSAA	4 cut(s)	100, 353, 367, 907
AjnI	CCWGG	1 cut(s)	971
AluBI	AGCT	5 cut(s)	14, 283, 446, 527, 852
AluI	AGCT	5 cut(s)	14, 283, 446, 527, 852
Alw21I	GWGCWC	1 cut(s)	529
Alw26I	GTCTC	3 cut(s)	44, 132, 375
AlwI	GGATC	2 cut(s)	86, 426
Aor13HI	TCCGGA	1 cut(s)	377
ApeKI	GCWGC	3 cut(s)	545, 719, 852
ApoI	RAATTY	4 cut(s)	178, 335, 353, 686
Asp700I	GAANNNNTTC	1 cut(s)	980
AsuHPI	GGTGA	2 cut(s)	251, 546
BanII	GRGCYC	1 cut(s)	529
BbsI	GAAGAC	1 cut(s)	374
Bbv12I	GWGCWC	1 cut(s)	529
BbvI	GCAGC	3 cut(s)	532, 706, 839
BccI	CCATC	2 cut(s)	410, 506
BcgI	CGANNNNNNTGC	2 cut(s)	890, 924
BciT130I	CCWGG	1 cut(s)	973
BciVI	GTATCC	1 cut(s)	174
BcoDI	GTCTC	3 cut(s)	44, 132, 375
BfaI	CTAG	2 cut(s)	131, 186
BfuI	GTATCC	1 cut(s)	174
BisI	GCNGC	4 cut(s)	546, 720, 836, 853
BlsI	GCNGC	4 cut(s)	547, 721, 837, 854
Bme1390I	CCNGG	1 cut(s)	973
BmiI	GGNNCC	2 cut(s)	321, 809
BmrFI	CCNGG	1 cut(s)	973
BmsI	GCATC	5 cut(s)	489, 625, 742, 775, 827
BpiI	GAAGAC	1 cut(s)	374
BpuEI	CTTGAG	2 cut(s)	269, 821
BsaJI	CCNNGG	1 cut(s)	457
BsaWI	WCCGGW	1 cut(s)	377
Bsc4I	CCNNNNNNNGG	1 cut(s)	329
Bse1I	ACTGG	1 cut(s)	334
Bse3DI	GCAATG	1 cut(s)	298
BseAI	TCCGGA	1 cut(s)	377
BseBI	CCWGG	1 cut(s)	973
BseDI	CCNNGG	1 cut(s)	457
BseGI	GGATG	3 cut(s)	259, 480, 891
BseLI	CCNNNNNNNGG	1 cut(s)	329
BseMI	GCAATG	1 cut(s)	298
BseMII	CTCAG	1 cut(s)	363
BseNI	ACTGG	1 cut(s)	334
BseXI	GCAGC	3 cut(s)	532, 706, 839
BsgI	GTGCAG	2 cut(s)	58, 945
Bsh1236I	CGCG	2 cut(s)	37, 838
BsiHKAI	GWGCWC	1 cut(s)	529
BsiSI	CCGG	1 cut(s)	378
BslFI	GGGAC	2 cut(s)	439, 947
BslI	CCNNNNNNNGG	1 cut(s)	329
BsmAI	GTCTC	3 cut(s)	44, 132, 375
BsmBI	CGTCTC	1 cut(s)	44
BsmFI	GGGAC	2 cut(s)	439, 947
Bsp1286I	GDGCHC	1 cut(s)	529
Bsp13I	TCCGGA	1 cut(s)	377
Bsp143I	GATC	4 cut(s)	91, 241, 431, 551
BspACI	CCGC	3 cut(s)	82, 836, 859
BspCNI	CTCAG	1 cut(s)	364
BspEI	TCCGGA	1 cut(s)	377
BspFNI	CGCG	2 cut(s)	37, 838
BspHI	TCATGA	1 cut(s)	495
BspLI	GGNNCC	2 cut(s)	321, 809
BspPI	GGATC	2 cut(s)	86, 426
BsrDI	GCAATG	1 cut(s)	298
BsrI	ACTGG	1 cut(s)	334
BssECI	CCNNGG	1 cut(s)	457
BssMI	GATC	4 cut(s)	91, 241, 431, 551
BssT1I	CCWWGG	1 cut(s)	457
Bst2UI	CCWGG	1 cut(s)	973
Bst4CI	ACNGT	2 cut(s)	386, 603
BstAPI	GCANNNNNTGC	1 cut(s)	542
BstC8I	GCNNGC	3 cut(s)	705, 757, 857
BstDEI	CTNAG	2 cut(s)	372, 920
BstF5I	GGATG	3 cut(s)	259, 480, 891
BstFNI	CGCG	2 cut(s)	37, 838
BstKTI	GATC	4 cut(s)	94, 244, 434, 554
BstMAI	GTCTC	3 cut(s)	44, 132, 375
BstMBI	GATC	4 cut(s)	91, 241, 431, 551
BstMWI	GCNNNNNNNGC	4 cut(s)	81, 533, 542, 644
BstNI	CCWGG	1 cut(s)	973
BstNSI	RCATGY	3 cut(s)	574, 759, 859
BstSCI	CCNGG	1 cut(s)	971
BstUI	CGCG	2 cut(s)	37, 838
BstV1I	GCAGC	3 cut(s)	532, 706, 839
BstV2I	GAAGAC	1 cut(s)	374
BsuI	GTATCC	1 cut(s)	174
BtsCI	GGATG	3 cut(s)	259, 480, 891
BtsIMutI	CAGTG	1 cut(s)	391
Cac8I	GCNNGC	3 cut(s)	705, 757, 857
CciI	TCATGA	1 cut(s)	495
CseI	GACGC	2 cut(s)	26, 430
Csp6I	GTAC	1 cut(s)	797
CviAII	CATG	9 cut(s)	496, 571, 581, 680, 716, 756, 761, 856, 956
CviQI	GTAC	1 cut(s)	797
DdeI	CTNAG	2 cut(s)	372, 920
DpnI	GATC	4 cut(s)	93, 243, 433, 553
DpnII	GATC	4 cut(s)	91, 241, 431, 551
Ecl136II	GAGCTC	1 cut(s)	527
Eco130I	CCWWGG	1 cut(s)	457
Eco24I	GRGCYC	1 cut(s)	529
Eco32I	GATATC	1 cut(s)	174
Eco53kI	GAGCTC	1 cut(s)	527
Eco57I	CTGAAG	1 cut(s)	432
EcoICRI	GAGCTC	1 cut(s)	527
EcoRI	GAATTC	2 cut(s)	353, 686
EcoRII	CCWGG	1 cut(s)	971
EcoRV	GATATC	1 cut(s)	174
EcoT14I	CCWWGG	1 cut(s)	457
EcoT22I	ATGCAT	2 cut(s)	757, 820
EcoT38I	GRGCYC	1 cut(s)	529
ErhI	CCWWGG	1 cut(s)	457
Esp3I	CGTCTC	1 cut(s)	44
FaeI	CATG	9 cut(s)	499, 574, 584, 683, 719, 759, 764, 859, 959
FaqI	GGGAC	2 cut(s)	439, 947
FatI	CATG	9 cut(s)	495, 570, 580, 679, 715, 755, 760, 855, 955
Fnu4HI	GCNGC	4 cut(s)	546, 720, 836, 853
FokI	GGATG	3 cut(s)	246, 467, 878
FriOI	GRGCYC	1 cut(s)	529
Fsp4HI	GCNGC	4 cut(s)	546, 720, 836, 853
FspBI	CTAG	2 cut(s)	131, 186
GluI	GCNGC	4 cut(s)	546, 720, 836, 853
HapII	CCGG	1 cut(s)	378
HgaI	GACGC	2 cut(s)	26, 430
Hin1II	CATG	9 cut(s)	499, 574, 584, 683, 719, 759, 764, 859, 959
HincII	GTYRAC	1 cut(s)	471
HindII	GTYRAC	1 cut(s)	471
HinfI	GANTC	5 cut(s)	8, 21, 54, 374, 766
HpaI	GTTAAC	1 cut(s)	471
HpaII	CCGG	1 cut(s)	378
HphI	GGTGA	2 cut(s)	251, 546
Hpy166II	GTNNAC	2 cut(s)	471, 606
Hpy188I	TCNGA	6 cut(s)	91, 511, 622, 677, 742, 986
Hpy188III	TCNNGA	8 cut(s)	100, 131, 167, 263, 286, 378, 496, 691
Hpy8I	GTNNAC	2 cut(s)	471, 606
Hpy99I	CGWCG	1 cut(s)	37
HpyAV	CCTTC	4 cut(s)	407, 470, 589, 719
HpyCH4III	ACNGT	2 cut(s)	386, 603
HpyCH4IV	ACGT	3 cut(s)	32, 348, 504
HpyCH4V	TGCA	8 cut(s)	75, 440, 548, 755, 788, 818, 855, 926
HpyF10VI	GCNNNNNNNGC	4 cut(s)	81, 533, 542, 644
HpyF3I	CTNAG	2 cut(s)	372, 920
HpySE526I	ACGT	3 cut(s)	32, 348, 504
Hsp92II	CATG	9 cut(s)	499, 574, 584, 683, 719, 759, 764, 859, 959
Kpn2I	TCCGGA	1 cut(s)	377
KspAI	GTTAAC	1 cut(s)	471
Kzo9I	GATC	4 cut(s)	91, 241, 431, 551
LmnI	GCTCC	3 cut(s)	404, 524, 813
Lsp1109I	GCAGC	3 cut(s)	532, 706, 839
LweI	GCATC	5 cut(s)	489, 625, 742, 775, 827
MaeI	CTAG	2 cut(s)	131, 186
MaeII	ACGT	3 cut(s)	32, 348, 504
MalI	GATC	4 cut(s)	93, 243, 433, 553
MboI	GATC	4 cut(s)	91, 241, 431, 551
MboII	GAAGA	5 cut(s)	148, 379, 695, 788, 943
MfeI	CAATTG	3 cut(s)	312, 630, 830
MhlI	GDGCHC	1 cut(s)	529
MlyI	GAGTC	3 cut(s)	30, 383, 775
MnlI	CCTC	4 cut(s)	289, 310, 596, 798
Mph1103I	ATGCAT	2 cut(s)	757, 820
MroI	TCCGGA	1 cut(s)	377
MroXI	GAANNNNTTC	1 cut(s)	980
MseI	TTAA	8 cut(s)	182, 254, 270, 326, 470, 501, 654, 966
MspA1I	CMGCKG	1 cut(s)	852
MspI	CCGG	1 cut(s)	378
MspR9I	CCNGG	1 cut(s)	973
MunI	CAATTG	3 cut(s)	312, 630, 830
MvaI	CCWGG	1 cut(s)	973
MvnI	CGCG	2 cut(s)	37, 838
MwoI	GCNNNNNNNGC	4 cut(s)	81, 533, 542, 644
NdeII	GATC	4 cut(s)	91, 241, 431, 551
NlaIII	CATG	9 cut(s)	499, 574, 584, 683, 719, 759, 764, 859, 959
NlaIV	GGNNCC	2 cut(s)	321, 809
NsiI	ATGCAT	2 cut(s)	757, 820
NspI	RCATGY	3 cut(s)	574, 759, 859
PaeI	GCATGC	2 cut(s)	759, 859
PagI	TCATGA	1 cut(s)	495
PdmI	GAANNNNTTC	1 cut(s)	980
PfeI	GAWTC	2 cut(s)	8, 54
PflFI	GACNNNGTC	1 cut(s)	373
PkrI	GCNGC	4 cut(s)	547, 721, 837, 854
PleI	GAGTC	3 cut(s)	29, 382, 774
PpsI	GAGTC	3 cut(s)	29, 382, 774
Psp124BI	GAGCTC	1 cut(s)	529
Psp6I	CCWGG	1 cut(s)	971
PspGI	CCWGG	1 cut(s)	971
PspN4I	GGNNCC	2 cut(s)	321, 809
PsyI	GACNNNGTC	1 cut(s)	373
PvuII	CAGCTG	1 cut(s)	852
RsaI	GTAC	1 cut(s)	798
RsaNI	GTAC	1 cut(s)	797
SacI	GAGCTC	1 cut(s)	529
SaqAI	TTAA	8 cut(s)	182, 254, 270, 326, 470, 501, 654, 966
SatI	GCNGC	4 cut(s)	546, 720, 836, 853
Sau3AI	GATC	4 cut(s)	91, 241, 431, 551
SchI	GAGTC	3 cut(s)	30, 383, 775
ScrFI	CCNGG	1 cut(s)	973
SduI	GDGCHC	1 cut(s)	529
SfaNI	GCATC	5 cut(s)	489, 625, 742, 775, 827
SmlI	CTYRAG	2 cut(s)	284, 800
SmoI	CTYRAG	2 cut(s)	284, 800
SphI	GCATGC	2 cut(s)	759, 859
SsiI	CCGC	3 cut(s)	82, 836, 859
SspMI	CTAG	2 cut(s)	131, 186
SstI	GAGCTC	1 cut(s)	529
StyD4I	CCNGG	1 cut(s)	971
StyI	CCWWGG	1 cut(s)	457
TaaI	ACNGT	2 cut(s)	386, 603
TaiI	ACGT	3 cut(s)	35, 351, 507
TaqI	TCGA	5 cut(s)	24, 57, 176, 220, 463
TatI	WGTACW	1 cut(s)	796
TauI	GCSGC	1 cut(s)	838
TfiI	GAWTC	2 cut(s)	8, 54
Tru1I	TTAA	8 cut(s)	182, 254, 270, 326, 470, 501, 654, 966
Tru9I	TTAA	8 cut(s)	182, 254, 270, 326, 470, 501, 654, 966
TscAI	CASTG	1 cut(s)	391
TseI	GCWGC	3 cut(s)	545, 719, 852
TspDTI	ATGAA	3 cut(s)	328, 696, 972
TspGWI	ACGGA	1 cut(s)	554
TspRI	CASTG	1 cut(s)	391
Tth111I	GACNNNGTC	1 cut(s)	373
XapI	RAATTY	4 cut(s)	178, 335, 353, 686
XbaI	TCTAGA	1 cut(s)	130
XceI	RCATGY	3 cut(s)	574, 759, 859
XmnI	GAANNNNTTC	1 cut(s)	980
XspI	CTAG	2 cut(s)	131, 186
Zsp2I	ATGCAT	2 cut(s)	757, 820

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.