Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0014304

Physical Location & Seq

Genomic Coordinates Forward (+)

2376743 .. 2378284

Gene Structure 1542 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g03020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGAGCGATTCAGCTTACAGAGTCGAAACGACGTCGCGCCTCGCCCAATGGAGGATCGACAACTTGGCTTCCTGCACATACCGAAAGTCCGATCCTTTCAAGATTGGCAAGTGGAACTGGCACTTATCTGTGGAGAAGAACAGAGTGTTGTTTGTTAGATTGTATCCAGAGATATCGAATTTGACGAGAGATAATCCGCCGATTGCTTCGTTTATTATTCGAGTCGTGTGTTCTGTCTTTTATGGTGATCGAAAGGCCTTAACTCATCCAGAAGTTACAAACAAAAAGCTCAAGAGCAATGATGATTTCATTTGGGCTATTGACGTTCCCTTAACCGGAAAATTCATCATCGACCTTGAATTCCTTGATTTGAAGACTGCATCCGGAGAGGGTGGAGAACCTTGCTCCATTTGGGCTGGAGGATTGACGCAAAAGCGATCAAATGCAACTGCTCTTGCGTCCCTTAGTCGAATGTTAACAGAAGGCATCCACACGGACATCATGATTAACGTGTCTGATGGAAGCATTGGAGCTCATCGGGCGATGCTTGCTGCTCATCACGATCGATCAACAGTTTTCCAGAGCATGTTTTCACATGACCTCAAAGAGAGAGAACTGTCTACCATAAACATCTCCGATATGTCAATTGAGGCTTGTCAAGCTTTTCTTAATTACATTTATGGGAACATCGGGTATGAAGAATTTCTGACCCACAGGTTGGCACTTCTCCATGCTGCTGATAAGTACGACATCTCTGACCTGAAAGACGCCTGCCATGAAAGTCTTTTGGAAGATATTGATACAAAGAATGTACTCGAGAGGCTCCAAAATGCATCTCTATACCAATTGCCGCGATTGAAAACCAGCTGCATGCGGTACCTTGTGAAGTTTGGGAAGATTTATGACATCCGAGATGATTTCAATGCTTTCTTGCTATGCGCAGACAGGGACTTGATAGCAGAAATCTTCGCCGAAGTTCTTGGTGCCTGGAAAGGGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB

Protein Analysis

334

Amino Acids

37.85

Weight (kDa)

6.08

Isoelectric Point (pI)

31.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	157 - 264	2.2e-18	BTB/POZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55760
fragaria_vesca	FvH4_3g42042
malus_domestica	MD03G1039200.v1.1 MD11G1039500.v1.1
prunus_persica	Prupe.6G031300_v2.0.a1
pyrus_communis	pycom03g03020 pycom11g03340
rosa_chinensis	RchiOBHm_Chr5g0075261
rosa_laevigata	RLG00000036543
rosa_multiflora	Rmu_sc0000770.1_g000061
rosa_roxburghii	Rroxscaffold_1G00006300
rosa_rugosa	Rorug05G0437900
rosa_samantha	Rh5AG494700 Rh5BG516300 Rh5CG540100 Rh5DG529000
rosa_wichuraiana	Rw5G045900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	35
Acc16I	TGCGCA	1 cut(s)	940
Acc65I	GGTACC	1 cut(s)	876
AccB1I	GGYRCC	2 cut(s)	876, 983
AccB7I	CCANNNNNTGG	1 cut(s)	718
AccI	GTMKAC	1 cut(s)	620
AccII	CGCG	2 cut(s)	37, 853
AccIII	TCCGGA	1 cut(s)	383
AciI	CCGC	3 cut(s)	197, 851, 874
AclWI	GGATC	2 cut(s)	62, 86
AcsI	RAATTY	4 cut(s)	178, 341, 359, 701
AcyI	GRCGYC	2 cut(s)	32, 768
AfaI	GTAC	3 cut(s)	746, 813, 878
AfiI	CCNNNNNNNGG	4 cut(s)	51, 335, 718, 993
AflIII	ACRYGT	1 cut(s)	510
AgsI	TTSAA	5 cut(s)	100, 359, 373, 859, 922
AjnI	CCWGG	1 cut(s)	986
AluBI	AGCT	5 cut(s)	14, 289, 533, 662, 867
AluI	AGCT	5 cut(s)	14, 289, 533, 662, 867
Alw21I	GWGCWC	1 cut(s)	535
AlwI	GGATC	2 cut(s)	62, 86
Ama87I	CYCGRG	1 cut(s)	815
Aor13HI	TCCGGA	1 cut(s)	383
AoxI	GGCC	1 cut(s)	255
ApeKI	GCWGC	3 cut(s)	551, 734, 867
ApoI	RAATTY	4 cut(s)	178, 341, 359, 701
Asp700I	GAANNNNTTC	2 cut(s)	702, 995
Asp718I	GGTACC	1 cut(s)	876
AspLEI	GCGC	2 cut(s)	39, 941
AsuHPI	GGTGA	1 cut(s)	257
AvaI	CYCGRG	1 cut(s)	815
BanI	GGYRCC	2 cut(s)	876, 983
BanII	GRGCYC	1 cut(s)	535
BbsI	GAAGAC	1 cut(s)	380
Bbv12I	GWGCWC	1 cut(s)	535
BbvI	GCAGC	3 cut(s)	538, 721, 854
BccI	CCATC	1 cut(s)	512
BciT130I	CCWGG	1 cut(s)	988
BciVI	GTATCC	1 cut(s)	174
BfuI	GTATCC	1 cut(s)	174
BisI	GCNGC	4 cut(s)	552, 735, 851, 868
BlsI	GCNGC	4 cut(s)	553, 736, 852, 869
Bme1390I	CCNGG	1 cut(s)	988
BmeT110I	CYCGRG	1 cut(s)	815
BmiI	GGNNCC	3 cut(s)	824, 878, 985
BmrFI	CCNGG	1 cut(s)	988
BmsI	GCATC	4 cut(s)	389, 495, 534, 842
BpiI	GAAGAC	1 cut(s)	380
BpmI	CTGGAG	1 cut(s)	438
BpuEI	CTTGAG	1 cut(s)	275
Bsa29I	ATCGAT	1 cut(s)	565
BsaHI	GRCGYC	2 cut(s)	32, 768
BsaWI	WCCGGW	2 cut(s)	335, 383
Bsc4I	CCNNNNNNNGG	4 cut(s)	51, 335, 718, 993
Bse1I	ACTGG	1 cut(s)	122
Bse3DI	GCAATG	1 cut(s)	304
BseAI	TCCGGA	1 cut(s)	383
BseBI	CCWGG	1 cut(s)	988
BseCI	ATCGAT	1 cut(s)	565
BseGI	GGATG	4 cut(s)	265, 380, 486, 906
BseLI	CCNNNNNNNGG	4 cut(s)	51, 335, 718, 993
BseMI	GCAATG	1 cut(s)	304
BseNI	ACTGG	1 cut(s)	122
BseXI	GCAGC	3 cut(s)	538, 721, 854
BsgI	GTGCAG	1 cut(s)	58
Bsh1236I	CGCG	2 cut(s)	37, 853
Bsh1285I	CGRYCG	1 cut(s)	565
BshFI	GGCC	1 cut(s)	257
BshNI	GGYRCC	2 cut(s)	876, 983
BshVI	ATCGAT	1 cut(s)	565
BsiEI	CGRYCG	1 cut(s)	565
BsiHKAI	GWGCWC	1 cut(s)	535
BsiHKCI	CYCGRG	1 cut(s)	815
BsiSI	CCGG	2 cut(s)	336, 384
BslFI	GGGAC	2 cut(s)	445, 962
BslI	CCNNNNNNNGG	4 cut(s)	51, 335, 718, 993
BsmFI	GGGAC	2 cut(s)	445, 962
BsnI	GGCC	1 cut(s)	257
BsoBI	CYCGRG	1 cut(s)	815
Bsp1286I	GDGCHC	1 cut(s)	535
Bsp13I	TCCGGA	1 cut(s)	383
Bsp143I	GATC	6 cut(s)	54, 91, 247, 437, 562, 566
BspACI	CCGC	3 cut(s)	197, 851, 874
BspANI	GGCC	1 cut(s)	257
BspDI	ATCGAT	1 cut(s)	565
BspEI	TCCGGA	1 cut(s)	383
BspFNI	CGCG	2 cut(s)	37, 853
BspHI	TCATGA	1 cut(s)	501
BspLI	GGNNCC	3 cut(s)	824, 878, 985
BspPI	GGATC	2 cut(s)	62, 86
BspT107I	GGYRCC	2 cut(s)	876, 983
BsrDI	GCAATG	1 cut(s)	304
BsrI	ACTGG	1 cut(s)	122
BssMI	GATC	6 cut(s)	54, 91, 247, 437, 562, 566
BssNI	GRCGYC	2 cut(s)	32, 768
Bst2UI	CCWGG	1 cut(s)	988
Bst4CI	ACNGT	2 cut(s)	574, 618
BstACI	GRCGYC	2 cut(s)	32, 768
BstC8I	GCNNGC	3 cut(s)	549, 772, 872
BstDEI	CTNAG	1 cut(s)	464
BstF5I	GGATG	4 cut(s)	265, 380, 486, 906
BstFNI	CGCG	2 cut(s)	37, 853
BstHHI	GCGC	2 cut(s)	39, 941
BstKTI	GATC	6 cut(s)	57, 94, 250, 440, 565, 569
BstMBI	GATC	6 cut(s)	54, 91, 247, 437, 562, 566
BstMCI	CGRYCG	1 cut(s)	565
BstMWI	GCNNNNNNNGC	3 cut(s)	539, 548, 659
BstNI	CCWGG	1 cut(s)	988
BstNSI	RCATGY	2 cut(s)	589, 874
BstSCI	CCNGG	1 cut(s)	986
BstUI	CGCG	2 cut(s)	37, 853
BstV1I	GCAGC	3 cut(s)	538, 721, 854
BstV2I	GAAGAC	1 cut(s)	380
Bsu15I	ATCGAT	1 cut(s)	565
BsuI	GTATCC	1 cut(s)	174
BsuRI	GGCC	1 cut(s)	257
BsuTUI	ATCGAT	1 cut(s)	565
BtgZI	GCGATG	1 cut(s)	557
BtsCI	GGATG	4 cut(s)	265, 380, 486, 906
Cac8I	GCNNGC	3 cut(s)	549, 772, 872
CciI	TCATGA	1 cut(s)	501
CfoI	GCGC	2 cut(s)	39, 941
ClaI	ATCGAT	1 cut(s)	565
CseI	GACGC	3 cut(s)	436, 447, 776
Csp6I	GTAC	3 cut(s)	745, 812, 877
CviAII	CATG	6 cut(s)	502, 586, 596, 731, 776, 871
CviQI	GTAC	3 cut(s)	745, 812, 877
DdeI	CTNAG	1 cut(s)	464
DpnI	GATC	6 cut(s)	56, 93, 249, 439, 564, 568
DpnII	GATC	6 cut(s)	54, 91, 247, 437, 562, 566
EciI	GGCGGA	1 cut(s)	186
Ecl136II	GAGCTC	1 cut(s)	533
Eco147I	AGGCCT	1 cut(s)	257
Eco24I	GRGCYC	1 cut(s)	535
Eco32I	GATATC	1 cut(s)	174
Eco53kI	GAGCTC	1 cut(s)	533
Eco88I	CYCGRG	1 cut(s)	815
EcoICRI	GAGCTC	1 cut(s)	533
EcoRI	GAATTC	1 cut(s)	359
EcoRII	CCWGG	1 cut(s)	986
EcoRV	GATATC	1 cut(s)	174
EcoT22I	ATGCAT	1 cut(s)	835
EcoT38I	GRGCYC	1 cut(s)	535
FaeI	CATG	6 cut(s)	505, 589, 599, 734, 779, 874
FalI	AAGNNNNNCTT	2 cut(s)	651, 683
FaqI	GGGAC	2 cut(s)	445, 962
FatI	CATG	6 cut(s)	501, 585, 595, 730, 775, 870
FblI	GTMKAC	1 cut(s)	620
Fnu4HI	GCNGC	4 cut(s)	552, 735, 851, 868
FokI	GGATG	4 cut(s)	252, 367, 473, 893
FriOI	GRGCYC	1 cut(s)	535
Fsp4HI	GCNGC	4 cut(s)	552, 735, 851, 868
FspI	TGCGCA	1 cut(s)	940
GlaI	GCGC	2 cut(s)	38, 940
GluI	GCNGC	4 cut(s)	552, 735, 851, 868
GsuI	CTGGAG	1 cut(s)	438
HaeIII	GGCC	1 cut(s)	257
HapII	CCGG	2 cut(s)	336, 384
HgaI	GACGC	3 cut(s)	436, 447, 776
HhaI	GCGC	2 cut(s)	39, 941
Hin1I	GRCGYC	2 cut(s)	32, 768
Hin1II	CATG	6 cut(s)	505, 589, 599, 734, 779, 874
Hin6I	GCGC	2 cut(s)	37, 939
HinP1I	GCGC	2 cut(s)	37, 939
HincII	GTYRAC	1 cut(s)	477
HindII	GTYRAC	1 cut(s)	477
HindIII	AAGCTT	1 cut(s)	660
HinfI	GANTC	3 cut(s)	8, 21, 222
HpaI	GTTAAC	1 cut(s)	477
HpaII	CCGG	2 cut(s)	336, 384
HphI	GGTGA	1 cut(s)	257
Hpy166II	GTNNAC	2 cut(s)	477, 621
Hpy188I	TCNGA	7 cut(s)	91, 517, 637, 708, 757, 911, 1001
Hpy188III	TCNNGA	9 cut(s)	100, 167, 269, 292, 384, 502, 560, 580, 817
Hpy8I	GTNNAC	2 cut(s)	477, 621
Hpy99I	CGWCG	2 cut(s)	34, 37
HpyAV	CCTTC	1 cut(s)	476
HpyCH4III	ACNGT	2 cut(s)	574, 618
HpyCH4IV	ACGT	3 cut(s)	32, 324, 510
HpyCH4V	TGCA	5 cut(s)	75, 380, 446, 833, 870
HpyF10VI	GCNNNNNNNGC	3 cut(s)	539, 548, 659
HpyF3I	CTNAG	1 cut(s)	464
HpySE526I	ACGT	3 cut(s)	32, 324, 510
Hsp92I	GRCGYC	2 cut(s)	32, 768
Hsp92II	CATG	6 cut(s)	505, 589, 599, 734, 779, 874
HspAI	GCGC	2 cut(s)	37, 939
Kpn2I	TCCGGA	1 cut(s)	383
KpnI	GGTACC	1 cut(s)	880
KspAI	GTTAAC	1 cut(s)	477
Kzo9I	GATC	6 cut(s)	54, 91, 247, 437, 562, 566
LmnI	GCTCC	3 cut(s)	410, 530, 828
Lsp1109I	GCAGC	3 cut(s)	538, 721, 854
LweI	GCATC	4 cut(s)	389, 495, 534, 842
MaeII	ACGT	3 cut(s)	32, 324, 510
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	6 cut(s)	56, 93, 249, 439, 564, 568
MboI	GATC	6 cut(s)	54, 91, 247, 437, 562, 566
MboII	GAAGA	6 cut(s)	148, 385, 710, 803, 907, 958
MfeI	CAATTG	2 cut(s)	645, 845
MhlI	GDGCHC	1 cut(s)	535
MluCI	AATT	7 cut(s)	178, 341, 359, 645, 670, 701, 845
MlyI	GAGTC	2 cut(s)	30, 231
MnlI	CCTC	7 cut(s)	45, 50, 382, 413, 611, 643, 813
Mph1103I	ATGCAT	1 cut(s)	835
MroI	TCCGGA	1 cut(s)	383
MroXI	GAANNNNTTC	2 cut(s)	702, 995
MseI	TTAA	5 cut(s)	260, 332, 476, 507, 669
MspA1I	CMGCKG	1 cut(s)	867
MspI	CCGG	2 cut(s)	336, 384
MspR9I	CCNGG	1 cut(s)	988
MunI	CAATTG	2 cut(s)	645, 845
MvaI	CCWGG	1 cut(s)	988
MvnI	CGCG	2 cut(s)	37, 853
MwoI	GCNNNNNNNGC	3 cut(s)	539, 548, 659
NdeII	GATC	6 cut(s)	54, 91, 247, 437, 562, 566
NlaIII	CATG	6 cut(s)	505, 589, 599, 734, 779, 874
NlaIV	GGNNCC	3 cut(s)	824, 878, 985
NsbI	TGCGCA	1 cut(s)	940
NsiI	ATGCAT	1 cut(s)	835
NspI	RCATGY	2 cut(s)	589, 874
PaeI	GCATGC	1 cut(s)	874
PaeR7I	CTCGAG	1 cut(s)	815
PagI	TCATGA	1 cut(s)	501
PceI	AGGCCT	1 cut(s)	257
PcsI	WCGNNNNNNNCGW	1 cut(s)	182
PdmI	GAANNNNTTC	2 cut(s)	702, 995
PfeI	GAWTC	1 cut(s)	8
PflMI	CCANNNNNTGG	1 cut(s)	718
PkrI	GCNGC	4 cut(s)	553, 736, 852, 869
Ple19I	CGATCG	1 cut(s)	565
PleI	GAGTC	2 cut(s)	29, 230
PpsI	GAGTC	2 cut(s)	29, 230
Psp124BI	GAGCTC	1 cut(s)	535
Psp6I	CCWGG	1 cut(s)	986
PspGI	CCWGG	1 cut(s)	986
PspN4I	GGNNCC	3 cut(s)	824, 878, 985
PvuI	CGATCG	1 cut(s)	565
PvuII	CAGCTG	1 cut(s)	867
RsaI	GTAC	3 cut(s)	746, 813, 878
RsaNI	GTAC	3 cut(s)	745, 812, 877
SacI	GAGCTC	1 cut(s)	535
SaqAI	TTAA	5 cut(s)	260, 332, 476, 507, 669
SatI	GCNGC	4 cut(s)	552, 735, 851, 868
Sau3AI	GATC	6 cut(s)	54, 91, 247, 437, 562, 566
SchI	GAGTC	2 cut(s)	30, 231
ScrFI	CCNGG	1 cut(s)	988
SduI	GDGCHC	1 cut(s)	535
SfaNI	GCATC	4 cut(s)	389, 495, 534, 842
Sfr274I	CTCGAG	1 cut(s)	815
SlaI	CTCGAG	1 cut(s)	815
SmlI	CTYRAG	2 cut(s)	290, 815
SmoI	CTYRAG	2 cut(s)	290, 815
SphI	GCATGC	1 cut(s)	874
Sse9I	AATT	7 cut(s)	178, 341, 359, 645, 670, 701, 845
SseBI	AGGCCT	1 cut(s)	257
SsiI	CCGC	3 cut(s)	197, 851, 874
SstI	GAGCTC	1 cut(s)	535
StuI	AGGCCT	1 cut(s)	257
StyD4I	CCNGG	1 cut(s)	986
TaaI	ACNGT	2 cut(s)	574, 618
TaiI	ACGT	3 cut(s)	35, 327, 513
TaqI	TCGA	9 cut(s)	24, 57, 176, 220, 250, 351, 469, 565, 816
TasI	AATT	7 cut(s)	178, 341, 359, 645, 670, 701, 845
TatI	WGTACW	1 cut(s)	811
TauI	GCSGC	1 cut(s)	853
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	5 cut(s)	260, 332, 476, 507, 669
Tru9I	TTAA	5 cut(s)	260, 332, 476, 507, 669
TseI	GCWGC	3 cut(s)	551, 734, 867
TspDTI	ATGAA	4 cut(s)	298, 334, 711, 792
TspGWI	ACGGA	1 cut(s)	509
Van91I	CCANNNNNTGG	1 cut(s)	718
XapI	RAATTY	4 cut(s)	178, 341, 359, 701
XceI	RCATGY	2 cut(s)	589, 874
XhoI	CTCGAG	1 cut(s)	815
XmiI	GTMKAC	1 cut(s)	620
XmnI	GAANNNNTTC	2 cut(s)	702, 995
ZraI	GACGTC	1 cut(s)	33
Zsp2I	ATGCAT	1 cut(s)	835

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.