Rorug05G0437900

BTB POZ domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0014304
Physical Location & Seq
Forward (+)
60857347 .. 60857946
600 bp
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UTR
Exon/CDS
Intron
Rorug05G0437900.1

Sequence Viewer

Length: 600 bp
ATGAAACCACAAACCCAGCAACCAACCGAGGATGGAGGAAGCAACAAAGCAGCCGGGAGTAGTGCTAACATGCTTTATAAGCGGAGTAGGTGGACTCCCACTACAGATCAGATAAGAATCCTCAAGGAGCTTTTCTACAATAAGGGAGTTAGGTCCCCAACTGTAGAGCAGGTTGAGAGGATCTATCTCCAGCTGAAATGGTACGGCGAGATCGAGTTCAAGAACGTCTATTTTTGGTTCGTGAACCAAAGGGCTCGGGAGAAGCAGAAGAAGAAGTCCACTTCGAATGTTCATGTGCCCATGCAAAGATCAGGGCTTGTTGGTGATGACAATGTTGCCAATTCATTTGCACCTGCTTCTGCTTCTTCTGCTGGTGTGATGATTGCTGTTAACGGGCAGATGGGGAACTATGGTGGTTATGGATCTATGAACATGGAGATTGAAACCCTTCCTCTGTTCCCCATGCATGGTGAGGACATCTTTGGCAACATGAAGACTACTTCCGATGGAGGTGGCGGTCACGGTGGTGGCTCTCACATTTCCTTTGAGCTCAGCCTTTCCTGCGAGGGCAAAGCTGGAAAAAGTTTCCGGAGCCGCTGA

Protein Analysis

199

Amino Acids

21.93

Weight (kDa)

9.41

Isoelectric Point (pI)

54.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 27 - 89 1.6e-09 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014304)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55760
fragaria_vesca FvH4_3g42042
malus_domestica MD03G1039200.v1.1 MD11G1039500.v1.1
prunus_persica Prupe.6G031300_v2.0.a1
pyrus_communis pycom03g03020 pycom11g03340
rosa_chinensis RchiOBHm_Chr5g0075261
rosa_laevigata RLG00000036543
rosa_multiflora Rmu_sc0000770.1_g000061
rosa_roxburghii Rroxscaffold_1G00006300
rosa_rugosa Rorug05G0437900
rosa_samantha Rh5AG494700 Rh5BG516300 Rh5CG540100 Rh5DG529000
rosa_wichuraiana Rw5G045900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 78
AarI CACCTGC 1 cut(s) 361
Acc36I ACCTGC 2 cut(s) 160, 361
AccIII TCCGGA 1 cut(s) 588
AciI CCGC 3 cut(s) 82, 516, 595
AclWI GGATC 2 cut(s) 188, 430
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 1 cut(s) 467
AgsI TTSAA 2 cut(s) 220, 443
AleI CACNNNNGTG 1 cut(s) 525
AluBI AGCT 4 cut(s) 130, 193, 550, 575
AluI AGCT 4 cut(s) 130, 193, 550, 575
Alw21I GWGCWC 1 cut(s) 552
AlwI GGATC 2 cut(s) 188, 430
Ama87I CYCGRG 1 cut(s) 255
Aor13HI TCCGGA 1 cut(s) 588
ApeKI GCWGC 1 cut(s) 50
Asp700I GAANNNNTTC 1 cut(s) 447
AspS9I GGNCC 1 cut(s) 153
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 2 cut(s) 335, 482
AsuII TTCGAA 1 cut(s) 284
AvaI CYCGRG 1 cut(s) 255
AvaII GGWCC 1 cut(s) 153
BaeGI GKGCMC 1 cut(s) 300
BanII GRGCYC 2 cut(s) 256, 552
BbsI GAAGAC 1 cut(s) 500
Bbv12I GWGCWC 1 cut(s) 552
BbvI GCAGC 1 cut(s) 62
BccI CCATC 3 cut(s) 26, 394, 500
BceAI ACGGC 1 cut(s) 220
BcnI CCSGG 1 cut(s) 55
BfmI CTRYAG 2 cut(s) 102, 162
BfuAI ACCTGC 2 cut(s) 160, 361
BisI GCNGC 2 cut(s) 51, 595
BlpI GCTNAGC 1 cut(s) 551
BlsI GCNGC 2 cut(s) 52, 596
Bme1390I CCNGG 1 cut(s) 55
Bme18I GGWCC 1 cut(s) 153
BmeT110I CYCGRG 1 cut(s) 255
BmgT120I GGNCC 1 cut(s) 153
BmiI GGNNCC 2 cut(s) 155, 593
BmrFI CCNGG 1 cut(s) 55
BpiI GAAGAC 1 cut(s) 500
BpmI CTGGAG 1 cut(s) 173
Bpu1102I GCTNAGC 1 cut(s) 551
Bpu14I TTCGAA 1 cut(s) 284
BpuEI CTTGAG 1 cut(s) 107
BpuMI CCSGG 1 cut(s) 55
BsaBI GATNNNNATC 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 27
BsaWI WCCGGW 1 cut(s) 588
Bsc4I CCNNNNNNNGG 1 cut(s) 467
Bse8I GATNNNNATC 1 cut(s) 116
BseAI TCCGGA 1 cut(s) 588
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 1 cut(s) 37
BseJI GATNNNNATC 1 cut(s) 116
BseLI CCNNNNNNNGG 1 cut(s) 467
BseMII CTCAG 1 cut(s) 565
BseSI GKGCMC 1 cut(s) 300
BseXI GCAGC 1 cut(s) 62
BseYI CCCAGC 1 cut(s) 15
BsiHKAI GWGCWC 1 cut(s) 552
BsiHKCI CYCGRG 1 cut(s) 255
BsiSI CCGG 2 cut(s) 54, 589
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 1 cut(s) 467
BsmFI GGGAC 1 cut(s) 139
BsoBI CYCGRG 1 cut(s) 255
Bsp119I TTCGAA 1 cut(s) 284
Bsp1286I GDGCHC 3 cut(s) 256, 300, 552
Bsp13I TCCGGA 1 cut(s) 588
Bsp143I GATC 5 cut(s) 106, 180, 210, 308, 422
Bsp1720I GCTNAGC 1 cut(s) 551
BspACI CCGC 3 cut(s) 82, 516, 595
BspCNI CTCAG 1 cut(s) 564
BspEI TCCGGA 1 cut(s) 588
BspLI GGNNCC 2 cut(s) 155, 593
BspMI ACCTGC 2 cut(s) 160, 361
BspPI GGATC 2 cut(s) 188, 430
BspT104I TTCGAA 1 cut(s) 284
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 5 cut(s) 106, 180, 210, 308, 422
Bst4CI ACNGT 2 cut(s) 163, 524
BstBI TTCGAA 1 cut(s) 284
BstDEI CTNAG 1 cut(s) 551
BstF5I GGATG 1 cut(s) 37
BstKTI GATC 5 cut(s) 109, 183, 213, 311, 425
BstMBI GATC 5 cut(s) 106, 180, 210, 308, 422
BstMWI GCNNNNNNNGC 3 cut(s) 79, 368, 561
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 1 cut(s) 53
BstSFI CTRYAG 2 cut(s) 102, 162
BstSLI GKGCMC 1 cut(s) 300
BstV1I GCAGC 1 cut(s) 62
BstV2I GAAGAC 1 cut(s) 500
BstX2I RGATCY 2 cut(s) 180, 422
BstYI RGATCY 2 cut(s) 180, 422
BtsCI GGATG 1 cut(s) 37
BveI ACCTGC 2 cut(s) 160, 361
Cfr13I GGNCC 1 cut(s) 153
Csp6I GTAC 1 cut(s) 202
CviAII CATG 7 cut(s) 70, 293, 301, 433, 463, 467, 490
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 1 cut(s) 551
DpnI GATC 5 cut(s) 108, 182, 212, 310, 424
DpnII GATC 5 cut(s) 106, 180, 210, 308, 422
Ecl136II GAGCTC 1 cut(s) 550
Eco24I GRGCYC 2 cut(s) 256, 552
Eco47I GGWCC 1 cut(s) 153
Eco53kI GAGCTC 1 cut(s) 550
Eco88I CYCGRG 1 cut(s) 255
EcoICRI GAGCTC 1 cut(s) 550
EcoO109I RGGNCCY 1 cut(s) 153
EcoT22I ATGCAT 1 cut(s) 468
EcoT38I GRGCYC 2 cut(s) 256, 552
FaeI CATG 7 cut(s) 73, 296, 304, 436, 466, 470, 493
FaqI GGGAC 1 cut(s) 139
FatI CATG 7 cut(s) 69, 292, 300, 432, 462, 466, 489
Fnu4HI GCNGC 2 cut(s) 51, 595
FokI GGATG 1 cut(s) 44
FriOI GRGCYC 2 cut(s) 256, 552
Fsp4HI GCNGC 2 cut(s) 51, 595
GluI GCNGC 2 cut(s) 51, 595
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 1 cut(s) 173
HapII CCGG 2 cut(s) 54, 589
Hin1II CATG 7 cut(s) 73, 296, 304, 436, 466, 470, 493
HincII GTYRAC 1 cut(s) 391
HindII GTYRAC 1 cut(s) 391
HinfI GANTC 2 cut(s) 94, 117
HpaI GTTAAC 1 cut(s) 391
HpaII CCGG 2 cut(s) 54, 589
HphI GGTGA 2 cut(s) 335, 482
Hpy166II GTNNAC 4 cut(s) 93, 244, 279, 391
Hpy188I TCNGA 2 cut(s) 111, 505
Hpy188III TCNNGA 4 cut(s) 220, 241, 257, 589
Hpy8I GTNNAC 4 cut(s) 93, 244, 279, 391
HpyAV CCTTC 1 cut(s) 458
HpyCH4III ACNGT 2 cut(s) 163, 524
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 3 cut(s) 304, 350, 466
HpyF10VI GCNNNNNNNGC 3 cut(s) 79, 368, 561
HpyF3I CTNAG 1 cut(s) 551
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 7 cut(s) 73, 296, 304, 436, 466, 470, 493
Kpn2I TCCGGA 1 cut(s) 588
KspAI GTTAAC 1 cut(s) 391
Kzo9I GATC 5 cut(s) 106, 180, 210, 308, 422
LmnI GCTCC 2 cut(s) 127, 591
LpnPI CCDG 9 cut(s) 29, 67, 155, 203, 297, 357, 366, 561, 574
Lsp1109I GCAGC 1 cut(s) 62
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 1 cut(s) 518
MalI GATC 5 cut(s) 108, 182, 212, 310, 424
MboI GATC 5 cut(s) 106, 180, 210, 308, 422
MboII GAAGA 4 cut(s) 280, 283, 357, 505
MflI RGATCY 2 cut(s) 180, 422
MhlI GDGCHC 3 cut(s) 256, 300, 552
MluCI AATT 1 cut(s) 340
MlyI GAGTC 1 cut(s) 88
MnlI CCTC 8 cut(s) 22, 29, 131, 171, 462, 466, 503, 559
Mph1103I ATGCAT 1 cut(s) 468
MroI TCCGGA 1 cut(s) 588
MroXI GAANNNNTTC 1 cut(s) 447
MseI TTAA 1 cut(s) 390
MslI CAYNNNNRTG 1 cut(s) 525
MspA1I CMGCKG 2 cut(s) 193, 597
MspI CCGG 2 cut(s) 54, 589
MspR9I CCNGG 1 cut(s) 55
MwoI GCNNNNNNNGC 3 cut(s) 79, 368, 561
NciI CCSGG 1 cut(s) 55
NdeII GATC 5 cut(s) 106, 180, 210, 308, 422
NlaIII CATG 7 cut(s) 73, 296, 304, 436, 466, 470, 493
NlaIV GGNNCC 2 cut(s) 155, 593
NmuCI GTSAC 1 cut(s) 518
NsiI ATGCAT 1 cut(s) 468
NspI RCATGY 1 cut(s) 73
NspV TTCGAA 1 cut(s) 284
OliI CACNNNNGTG 1 cut(s) 525
PaqCI CACCTGC 1 cut(s) 361
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PdmI GAANNNNTTC 1 cut(s) 447
PfeI GAWTC 1 cut(s) 117
PkrI GCNGC 2 cut(s) 52, 596
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
PpuMI RGGWCCY 1 cut(s) 153
PsiI TTATAA 1 cut(s) 78
Psp124BI GAGCTC 1 cut(s) 552
Psp5II RGGWCCY 1 cut(s) 153
PspFI CCCAGC 1 cut(s) 15
PspN4I GGNNCC 2 cut(s) 155, 593
PspPI GGNCC 1 cut(s) 153
PspPPI RGGWCCY 1 cut(s) 153
PsuI RGATCY 2 cut(s) 180, 422
PvuII CAGCTG 1 cut(s) 193
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
RseI CAYNNNNRTG 1 cut(s) 525
SacI GAGCTC 1 cut(s) 552
SaqAI TTAA 1 cut(s) 390
SatI GCNGC 2 cut(s) 51, 595
Sau3AI GATC 5 cut(s) 106, 180, 210, 308, 422
Sau96I GGNCC 1 cut(s) 153
SchI GAGTC 1 cut(s) 88
ScrFI CCNGG 1 cut(s) 55
SduI GDGCHC 3 cut(s) 256, 300, 552
SfcI CTRYAG 2 cut(s) 102, 162
SfuI TTCGAA 1 cut(s) 284
SinI GGWCC 1 cut(s) 153
SmiMI CAYNNNNRTG 1 cut(s) 525
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 1 cut(s) 340
SsiI CCGC 3 cut(s) 82, 516, 595
SstI GAGCTC 1 cut(s) 552
StyD4I CCNGG 1 cut(s) 53
TaaI ACNGT 2 cut(s) 163, 524
TaiI ACGT 1 cut(s) 228
TaqI TCGA 2 cut(s) 213, 284
TasI AATT 1 cut(s) 340
TauI GCSGC 1 cut(s) 597
TfiI GAWTC 1 cut(s) 117
Tru1I TTAA 1 cut(s) 390
Tru9I TTAA 1 cut(s) 390
TseFI GTSAC 1 cut(s) 518
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 518
TspDTI ATGAA 5 cut(s) 17, 281, 333, 443, 506
VpaK11BI GGWCC 1 cut(s) 153
XceI RCATGY 1 cut(s) 73
XmnI GAANNNNTTC 1 cut(s) 447
Zsp2I ATGCAT 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.