AT1G55770

Invertase pectin methylesterase inhibitor family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015173
Physical Location & Seq
Reverse (-)
20850977 .. 20851664
688 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G55770.1

Sequence Viewer

Length: 528 bp
ATGAAGCAATCAGCCGGAGTTCTCTTCCTCTGCATCGTTCTCATCTCCTTCGTCACCGGAAATGCTAATTCCGGTATGATATCCGATCTCTGCAAACACTCCGACGATCCAAACCTCTGTCTCTCCAGCATAACTTCACGTCCCGAGTCCGGCGAATTCGCAGGCACCAGCAACCAGATCGAGATCATAGCTATCTCCGCCGCATCAGCCAACGCCTCCGCCACTTCCTCCTACATCAAACAAAAGCTCAGCAACGAAGATTTGGAGCCGGCTATTGAGGACACGCTTGAGGACTGTCAGAAAGATTACCAAGATGCCGTGGAGCAGCTAGATGACTCGATCTCCGCCATGCTCGCAGACGCACACACCGACGTCGATGTCTGGCTGAGCGCGGCGATCAGCGCCATCGAGTCATGTGGAAGCGCATTGGGTTCACGCGCTGGGAATGATGCTGAGCTTTCCCAGAGGAACGAAGTCTTTCTCAAGCTGTGCAAAAACGCTTTGATGATTAACAAAATGTTAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMEI

Protein Analysis

175

Amino Acids

18.58

Weight (kDa)

4.27

Isoelectric Point (pI)

40.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMEI PF04043 26 - 170 1.5e-26 Plant invertase/pectin methylesterase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55770 AT4G02250
fragaria_vesca FvH4_2g25950
malus_domestica MD03G1290800.v1.1 MD11G1307600.v1.1
rosa_chinensis RchiOBHm_Chr6g0294271
rosa_laevigata RLG00000011882
rosa_multiflora Rmu_co8483625.1_g000001 Rmu_sc0003996.1_g000007
rosa_roxburghii Rroxscaffold_7G00173490
rosa_rugosa Rorug06G0243400
rosa_samantha Rh6AG355600 Rh6BG362500 Rh6CG369600 Rh6DG356400
rosa_wichuraiana Rw6G030980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 377
AatII GACGTC 1 cut(s) 375
AccB1I GGYRCC 1 cut(s) 164
AccII CGCG 2 cut(s) 392, 438
AciI CCGC 5 cut(s) 198, 201, 219, 345, 392
AclWI GGATC 1 cut(s) 101
AcsI RAATTY 1 cut(s) 155
AcyI GRCGYC 1 cut(s) 372
AfiI CCNNNNNNNGG 1 cut(s) 149
AjiI CACGTC 1 cut(s) 140
AluBI AGCT 5 cut(s) 191, 247, 328, 457, 487
AluI AGCT 5 cut(s) 191, 247, 328, 457, 487
Alw26I GTCTC 1 cut(s) 125
AlwI GGATC 1 cut(s) 101
Ama87I CYCGRG 1 cut(s) 143
ApeKI GCWGC 1 cut(s) 325
ApoI RAATTY 1 cut(s) 155
Asp700I GAANNNNTTC 1 cut(s) 477
AspLEI GCGC 4 cut(s) 392, 404, 425, 440
AsuHPI GGTGA 1 cut(s) 46
AvaI CYCGRG 1 cut(s) 143
BanI GGYRCC 1 cut(s) 164
BbvI GCAGC 1 cut(s) 337
BccI CCATC 1 cut(s) 413
BceAI ACGGC 1 cut(s) 302
BcgI CGANNNNNNTGC 2 cut(s) 160, 194
BcoDI GTCTC 1 cut(s) 125
BfaI CTAG 1 cut(s) 329
BfoI RGCGCY 1 cut(s) 405
BisI GCNGC 3 cut(s) 201, 326, 393
BlpI GCTNAGC 3 cut(s) 248, 386, 453
BlsI GCNGC 3 cut(s) 202, 327, 394
BmeT110I CYCGRG 1 cut(s) 143
BmgBI CACGTC 1 cut(s) 140
BmiI GGNNCC 2 cut(s) 166, 267
BmsI GCATC 4 cut(s) 42, 212, 304, 439
BpmI CTGGAG 1 cut(s) 109
Bpu1102I GCTNAGC 3 cut(s) 248, 386, 453
BpuEI CTTGAG 2 cut(s) 308, 467
BsaBI GATNNNNATC 1 cut(s) 182
BsaHI GRCGYC 1 cut(s) 372
BsaJI CCNNGG 1 cut(s) 318
BsaWI WCCGGW 2 cut(s) 56, 71
BsaXI ACNNNNNCTCC 2 cut(s) 326, 356
Bsc4I CCNNNNNNNGG 1 cut(s) 149
Bse118I RCCGGY 1 cut(s) 268
Bse8I GATNNNNATC 1 cut(s) 182
BseDI CCNNGG 1 cut(s) 318
BseJI GATNNNNATC 1 cut(s) 182
BseLI CCNNNNNNNGG 1 cut(s) 149
BseMII CTCAG 3 cut(s) 262, 377, 444
BseXI GCAGC 1 cut(s) 337
BseYI CCCAGC 1 cut(s) 440
Bsh1236I CGCG 2 cut(s) 392, 438
BshNI GGYRCC 1 cut(s) 164
BsiHKCI CYCGRG 1 cut(s) 143
BsiSI CCGG 5 cut(s) 15, 57, 72, 150, 269
BslFI GGGAC 1 cut(s) 126
BslI CCNNNNNNNGG 1 cut(s) 149
BsmAI GTCTC 1 cut(s) 125
BsmFI GGGAC 1 cut(s) 126
BsoBI CYCGRG 1 cut(s) 143
Bsp143I GATC 6 cut(s) 85, 106, 177, 183, 339, 396
Bsp1720I GCTNAGC 3 cut(s) 248, 386, 453
BspACI CCGC 5 cut(s) 198, 201, 219, 345, 392
BspCNI CTCAG 3 cut(s) 261, 378, 445
BspFNI CGCG 2 cut(s) 392, 438
BspLI GGNNCC 2 cut(s) 166, 267
BspPI GGATC 1 cut(s) 101
BspT107I GGYRCC 1 cut(s) 164
BsrFI RCCGGY 1 cut(s) 268
BssAI RCCGGY 1 cut(s) 268
BssECI CCNNGG 1 cut(s) 318
BssMI GATC 6 cut(s) 85, 106, 177, 183, 339, 396
BssNI GRCGYC 1 cut(s) 372
Bst4CI ACNGT 1 cut(s) 296
Bst6I CTCTTC 1 cut(s) 29
BstACI GRCGYC 1 cut(s) 372
BstC8I GCNNGC 3 cut(s) 163, 270, 354
BstDEI CTNAG 3 cut(s) 248, 386, 453
BstDSI CCRYGG 1 cut(s) 318
BstFNI CGCG 2 cut(s) 392, 438
BstH2I RGCGCY 1 cut(s) 405
BstHHI GCGC 4 cut(s) 392, 404, 425, 440
BstKTI GATC 6 cut(s) 88, 109, 180, 186, 342, 399
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 6 cut(s) 85, 106, 177, 183, 339, 396
BstMWI GCNNNNNNNGC 4 cut(s) 197, 206, 353, 401
BstUI CGCG 2 cut(s) 392, 438
BstV1I GCAGC 1 cut(s) 337
BtgI CCRYGG 1 cut(s) 318
BtrI CACGTC 1 cut(s) 140
Cac8I GCNNGC 3 cut(s) 163, 270, 354
CfoI GCGC 4 cut(s) 392, 404, 425, 440
Cfr10I RCCGGY 1 cut(s) 268
CseI GACGC 1 cut(s) 368
CviAII CATG 2 cut(s) 349, 414
DdeI CTNAG 3 cut(s) 248, 386, 453
DpnI GATC 6 cut(s) 87, 108, 179, 185, 341, 398
DpnII GATC 6 cut(s) 85, 106, 177, 183, 339, 396
DrdI GACNNNNNNGTC 1 cut(s) 377
DseDI GACNNNNNNGTC 1 cut(s) 377
Eam1104I CTCTTC 1 cut(s) 29
EarI CTCTTC 1 cut(s) 29
EciI GGCGGA 3 cut(s) 187, 208, 334
Eco32I GATATC 1 cut(s) 81
Eco88I CYCGRG 1 cut(s) 143
EcoRI GAATTC 1 cut(s) 155
EcoRV GATATC 1 cut(s) 81
FaeI CATG 2 cut(s) 352, 417
FaiI YATR 5 cut(s) 77, 131, 188, 350, 415
FaqI GGGAC 1 cut(s) 126
FatI CATG 2 cut(s) 348, 413
Fnu4HI GCNGC 3 cut(s) 201, 326, 393
Fsp4HI GCNGC 3 cut(s) 201, 326, 393
FspBI CTAG 1 cut(s) 329
GlaI GCGC 4 cut(s) 391, 403, 424, 439
GluI GCNGC 3 cut(s) 201, 326, 393
GsaI CCCAGC 1 cut(s) 444
GsuI CTGGAG 1 cut(s) 109
HaeII RGCGCY 1 cut(s) 405
HapII CCGG 5 cut(s) 15, 57, 72, 150, 269
HgaI GACGC 1 cut(s) 368
HhaI GCGC 4 cut(s) 392, 404, 425, 440
Hin1I GRCGYC 1 cut(s) 372
Hin1II CATG 2 cut(s) 352, 417
Hin6I GCGC 4 cut(s) 390, 402, 423, 438
HinP1I GCGC 4 cut(s) 390, 402, 423, 438
HincII GTYRAC 1 cut(s) 522
HindII GTYRAC 1 cut(s) 522
HinfI GANTC 3 cut(s) 146, 335, 410
HpaI GTTAAC 1 cut(s) 522
HpaII CCGG 5 cut(s) 15, 57, 72, 150, 269
HphI GGTGA 1 cut(s) 46
Hpy166II GTNNAC 2 cut(s) 434, 522
Hpy188I TCNGA 3 cut(s) 85, 103, 300
Hpy188III TCNNGA 2 cut(s) 143, 181
Hpy8I GTNNAC 2 cut(s) 434, 522
Hpy99I CGWCG 3 cut(s) 107, 374, 377
HpyAV CCTTC 1 cut(s) 58
HpyCH4III ACNGT 1 cut(s) 296
HpyCH4IV ACGT 2 cut(s) 139, 372
HpyCH4V TGCA 3 cut(s) 33, 93, 492
HpyF10VI GCNNNNNNNGC 4 cut(s) 197, 206, 353, 401
HpyF3I CTNAG 3 cut(s) 248, 386, 453
HpySE526I ACGT 2 cut(s) 139, 372
Hsp92I GRCGYC 1 cut(s) 372
Hsp92II CATG 2 cut(s) 352, 417
HspAI GCGC 4 cut(s) 390, 402, 423, 438
KroI GCCGGC 1 cut(s) 268
KroNI GCCGGC 1 cut(s) 270
KspAI GTTAAC 1 cut(s) 522
Kzo9I GATC 6 cut(s) 85, 106, 177, 183, 339, 396
LmnI GCTCC 2 cut(s) 265, 322
Lsp1109I GCAGC 1 cut(s) 337
LweI GCATC 4 cut(s) 42, 212, 304, 439
MaeI CTAG 1 cut(s) 329
MaeII ACGT 2 cut(s) 139, 372
MaeIII GTNAC 1 cut(s) 52
MalI GATC 6 cut(s) 87, 108, 179, 185, 341, 398
MboI GATC 6 cut(s) 85, 106, 177, 183, 339, 396
MboII GAAGA 2 cut(s) 16, 269
MluCI AATT 2 cut(s) 67, 155
MlyI GAGTC 3 cut(s) 155, 329, 419
MmeI TCCRAC 1 cut(s) 126
MnlI CCTC 7 cut(s) 38, 125, 226, 238, 271, 283, 459
MroNI GCCGGC 1 cut(s) 268
MroXI GAANNNNTTC 1 cut(s) 477
MseI TTAA 2 cut(s) 510, 521
MspI CCGG 5 cut(s) 15, 57, 72, 150, 269
MvnI CGCG 2 cut(s) 392, 438
MwoI GCNNNNNNNGC 4 cut(s) 197, 206, 353, 401
NaeI GCCGGC 1 cut(s) 270
NdeII GATC 6 cut(s) 85, 106, 177, 183, 339, 396
NgoMIV GCCGGC 1 cut(s) 268
NlaIII CATG 2 cut(s) 352, 417
NlaIV GGNNCC 2 cut(s) 166, 267
NmuCI GTSAC 1 cut(s) 52
PcsI WCGNNNNNNNCGW 1 cut(s) 366
PdiI GCCGGC 1 cut(s) 270
PdmI GAANNNNTTC 1 cut(s) 477
PkrI GCNGC 3 cut(s) 202, 327, 394
PleI GAGTC 3 cut(s) 154, 329, 418
PpsI GAGTC 3 cut(s) 154, 329, 418
PspFI CCCAGC 1 cut(s) 440
PspN4I GGNNCC 2 cut(s) 166, 267
SaqAI TTAA 2 cut(s) 510, 521
SatI GCNGC 3 cut(s) 201, 326, 393
Sau3AI GATC 6 cut(s) 85, 106, 177, 183, 339, 396
SchI GAGTC 3 cut(s) 155, 329, 419
SetI ASST 8 cut(s) 117, 142, 193, 249, 330, 375, 459, 489
SfaNI GCATC 4 cut(s) 42, 212, 304, 439
SmlI CTYRAG 2 cut(s) 287, 482
SmoI CTYRAG 2 cut(s) 287, 482
Sse9I AATT 2 cut(s) 67, 155
SsiI CCGC 5 cut(s) 198, 201, 219, 345, 392
SspMI CTAG 1 cut(s) 329
TaaI ACNGT 1 cut(s) 296
TaiI ACGT 2 cut(s) 142, 375
TaqI TCGA 4 cut(s) 180, 338, 375, 408
TasI AATT 2 cut(s) 67, 155
TauI GCSGC 2 cut(s) 203, 395
Tru1I TTAA 2 cut(s) 510, 521
Tru9I TTAA 2 cut(s) 510, 521
TseFI GTSAC 1 cut(s) 52
TseI GCWGC 1 cut(s) 325
Tsp45I GTSAC 1 cut(s) 52
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 155
XmnI GAANNNNTTC 1 cut(s) 477
XspI CTAG 1 cut(s) 329
ZraI GACGTC 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.