Rorug06G0243400

pectinesterase pectinesterase inhibitor

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
38716611 .. 38723259
6649 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0243400.1

Sequence Viewer

Length: 1800 bp
ATGAAAATGACGGCTACCCAATTTAGAGGTGGTACACCTTCTACCGGGTTGAGGAATAGAACCAGTGACTACAATTCAGTAACTAAGAAAGTTAGGGTGTATTCATTGCGCCAAACGGAAGCTAAGTTTGTGGCACTAAGTAATAGAAAGGATTTGAGCAATGACAGTGCTGTGGGGGGCAGCAATCTGTCATCTAAGCATAGATCACAGTACTCGCCGCTAGTTACTCATCGCAGAAGGACCCGTTTTCCGGTGGTGGCTAATCAATTGAGTTCGGAGTTTGGTGTCGGTTGCTCTGAGGTTGAGGAAAAGGTGATTCTTAAGGAAATGCATGCTCCCCTAACTGCTGATCGTGATGAACCTGAGTTGAGAGACATTCCTGTCCCTGAAGCATATTCTCCAAATGTGAAACGCGAGCTGCTGATGCTTTCCTTACCTGCAATTGTGGGTCAGGCAATTGATCCCATAGCAATGCTGATGGAGACTGCTTATATTGGTAGACTGGGCTCTGTGGAGTTGGCCTCAGCTGGTGTATCAATGAACATCTTTAATTATATATCAAAACTATTTAATATCCCTCTCCTCAGTGTTGCTACATCTTTTGTGGCTGAAGACATTGCAAAGTCTGCAAGTAAAGCTTCTACTATAGAAAATGCTTATGAAGACATTACTAATGGAAAATCTGTACCTGCTGAGAGAAAGCAATTATCTTCAGTGTCAACAGCCTTACTTTTAGCACTTGGCATCGGCTTGTTTGAGGCGCTAGCCTTGTCTTTGGGATCTGGTTTGTTTCTGAATATGATGGGGATATCATCAAACTCTCCTATGCACATTCCGGCAAAAAGGTTTCTCATAATAAGAGCATTTGGTGCTCCTGCAGTTGTAGCATCTTTGGCTCTTCAAGGAGTTTTCCGTGGTTTTAAGGATACAACAACTCCAGTACTATGTCTAGGTATTGGTAATCTTTTAGCTGCGTTCTTGTTACCAACACTAATATATTATTTTTGTTTGGGTGTAACTGGTGCAGCAATGTCTACTGTTATATCTCAATACACCGTCACATTTTTAATGATCTGGTTTTTAAATAAGAAAGCAGTACTATTGCCTCCAAAGATGGGATCATTGCAATTTGGTGGATACATAAAATCTGGTGGTTTTCTTCTGGGAAGAACTCTTGCTGTTCTCACGACCATGACATTAGGAACATCAATGGCTGCTCGTCAAGGTCCAGTAGCTATGGCTGCTCATCAGATATGTATACAAGTATGGTTGGCTGTATCCCTTCTAACTGATGCACTCGCTACATCTGGTCAGGCCCTGATTGCGAGTTATTCATCAAAAGGCGAATACAAAATTGTTAAAGAGATTACTGACTTCATGCTGAAGATAGGATTGTTTATAGGTGTTTCATTGGCTGTAATTCTGGGAACATCTTTTGGTTCTATAGCGACCTTGTTCACCAAGGATGCTGCAGTATTGGAGATCCTTAGATCTGGGGTATTGTTTGTCAGTGCTAGTCAACCTTTGACTTCTTTAGCTTATGTTTTCGATGGTCTCCATTATGGTGTTTCAGATTTTGCATATGCAGCTCGTGCCATGATGGTTGTGGGTGCAATATCATCTGTATTTCTGCTATATGCTCCTTCTGTTATCGGTCTTTCTGGGGTTTGGTTGGGTTTGACTCTCTTCATGGGCTTGCGTGCTGTGGCTGGATTTGTCAGATTGCTTTCAAAATCAGGTCCATGGTGGTTCCTGCATAGGGACACTGAGACACCTCAGCTTGTAACGAGCGGATATTAG

Protein Analysis

599

Amino Acids

64.25

Weight (kDa)

9.52

Isoelectric Point (pI)

38.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 238 - 327 1.8e-07 MatE
MatE PF01554 398 - 536 3.7e-07 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000127)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02381 FvH4_1g19463 FvH4_1g28433 FvH4_2g16143 FvH4_2g18491 FvH4_2g27711 FvH4_3g19631 FvH4_3g23573 FvH4_4g35743 FvH4_5g23701 FvH4_6g19603 FvH4_6g39781 FvH4_6g40561 FvH4_7g02563 FvH4_7g11472 FvH4_7g17530
rosa_chinensis RchiOBHm_Chr1g0315991 RchiOBHm_Chr1g0318371 RchiOBHm_Chr1g0328341 RchiOBHm_Chr1g0331431 RchiOBHm_Chr1g0344801 RchiOBHm_Chr1g0371461 RchiOBHm_Chr1g0379261 RchiOBHm_Chr2g0117661 RchiOBHm_Chr5g0011791 RchiOBHm_Chr5g0020991 RchiOBHm_Chr5g0060631 RchiOBHm_Chr5g0064181 RchiOBHm_Chr5g0080181 RchiOBHm_Chr6g0254691 RchiOBHm_Chr6g0260101 RchiOBHm_Chr6g0290901 RchiOBHm_Chr7g0201691
rosa_laevigata RLG00000003529 RLG00000009370 RLG00000013568
rosa_multiflora Rmu_co8437743.1_g000001 Rmu_sc0000063.1_g000028 Rmu_sc0000098.1_g000004 Rmu_sc0000166.1_g000028 Rmu_sc0000258.1_g000102 Rmu_sc0000288.1_g000018 Rmu_sc0000333.1_g000043 Rmu_sc0000451.1_g000011 Rmu_sc0000455.1_g000003 Rmu_sc0000479.1_g000002 Rmu_sc0000687.1_g000014 Rmu_sc0000733.1_g000024 Rmu_sc0000736.1_g000001 Rmu_sc0000745.1_g000017 Rmu_sc0000760.1_g000031 Rmu_sc0000776.1_g000044 Rmu_sc0000828.1_g000011 Rmu_sc0000830.1_g000027 Rmu_sc0000857.1_g000025 Rmu_sc0000864.1_g000013 Rmu_sc0001016.1_g000034 Rmu_sc0001016.1_g000035 Rmu_sc0001036.1_g000015 Rmu_sc0001096.1_g000020 Rmu_sc0001145.1_g000023 Rmu_sc0001167.1_g000057 Rmu_sc0001173.1_g000030 Rmu_sc0001260.1_g000006 Rmu_sc0001266.1_g000016 Rmu_sc0001346.1_g000003 Rmu_sc0001346.1_g000004 Rmu_sc0001386.1_g000005 Rmu_sc0001501.1_g000057 Rmu_sc0001565.1_g000058 Rmu_sc0001634.1_g000047 Rmu_sc0001699.1_g000018 Rmu_sc0001700.1_g000041 Rmu_sc0001700.1_g000055 Rmu_sc0001725.1_g000005 Rmu_sc0001823.1_g000005 Rmu_sc0001877.1_g000014 Rmu_sc0001942.1_g000059 Rmu_sc0001966.1_g000033 Rmu_sc0001998.1_g000009 Rmu_sc0002011.1_g000030 Rmu_sc0002147.1_g000007 Rmu_sc0002176.1_g000005 Rmu_sc0002235.1_g000097 Rmu_sc0002324.1_g000002 Rmu_sc0002352.1_g000011 Rmu_sc0002365.1_g000022 Rmu_sc0002548.1_g000007 Rmu_sc0002890.1_g000008 Rmu_sc0002936.1_g000003 Rmu_sc0002955.1_g000016 Rmu_sc0003160.1_g000032 Rmu_sc0003452.1_g000010 Rmu_sc0003490.1_g000023 Rmu_sc0003541.1_g000014 Rmu_sc0003555.1_g000014 Rmu_sc0003759.1_g000008 Rmu_sc0003843.1_g000001 Rmu_sc0003846.1_g000005 Rmu_sc0003890.1_g000019 Rmu_sc0003953.1_g000016 Rmu_sc0003967.1_g000001 Rmu_sc0004068.1_g000002 Rmu_sc0004101.1_g000004 Rmu_sc0004298.1_g000010 Rmu_sc0004507.1_g000008 Rmu_sc0004649.1_g000015 Rmu_sc0004719.1_g000006 Rmu_sc0004751.1_g000012 Rmu_sc0004821.1_g000005 Rmu_sc0004868.1_g000003 Rmu_sc0004876.1_g000023 Rmu_sc0004932.1_g000020 Rmu_sc0005093.1_g000020 Rmu_sc0005132.1_g000019 Rmu_sc0005274.1_g000001 Rmu_sc0005381.1_g000013 Rmu_sc0005693.1_g000009 Rmu_sc0005708.1_g000011 Rmu_sc0005834.1_g000016 Rmu_sc0005966.1_g000017 Rmu_sc0006173.1_g000033 Rmu_sc0006175.1_g000012 Rmu_sc0006590.1_g000004 Rmu_sc0006695.1_g000044 Rmu_sc0007061.1_g000002 Rmu_sc0007069.1_g000023 Rmu_sc0007216.1_g000006 Rmu_sc0008124.1_g000026 Rmu_sc0008148.1_g000028 Rmu_sc0008198.1_g000004 Rmu_sc0008423.1_g000003 Rmu_sc0008441.1_g000011 Rmu_sc0008707.1_g000005 Rmu_sc0009101.1_g000008 Rmu_sc0009240.1_g000039 Rmu_sc0009414.1_g000002 Rmu_sc0009628.1_g000001 Rmu_sc0010048.1_g000007 Rmu_sc0010275.1_g000001 Rmu_sc0010338.1_g000004 Rmu_sc0010659.1_g000005 Rmu_sc0010691.1_g000001 Rmu_sc0011023.1_g000006 Rmu_sc0011533.1_g000001 Rmu_sc0011901.1_g000001 Rmu_sc0012746.1_g000042 Rmu_sc0012773.1_g000005 Rmu_sc0012952.1_g000005 Rmu_sc0014568.1_g000002 Rmu_sc0014568.1_g000003 Rmu_sc0015188.1_g000004 Rmu_sc0019714.1_g000001 Rmu_sc0020148.1_g000003 Rmu_sc0020260.1_g000003 Rmu_sc0021213.1_g000002 Rmu_sc0022616.1_g000001 Rmu_ssc0000084.1_g000006 Rmu_ssc0000116.1_g000017 Rmu_ssc0000116.1_g000018 Rmu_ssc0000189.1_g000037 Rmu_ssc0000330.1_g000009 Rmu_ssc0000359.1_g000004 Rmu_ssc0000366.1_g000031 Rmu_ssc0000386.1_g000056 Rmu_ssc0000387.1_g000006 Rmu_ssc0000400.1_g000065 Rmu_ssc0000440.1_g000006 Rmu_ssc0000452.1_g000014
rosa_roxburghii Rroxscaffold_1G00020180 Rroxscaffold_2G00089580 Rroxscaffold_2G00143500 Rroxscaffold_3G00264360 Rroxscaffold_4G00316450 Rroxscaffold_4G00327050 Rroxscaffold_5G00350260 Rroxscaffold_5G00351750 Rroxscaffold_5G00364680 Rroxscaffold_5G00376220 Rroxscaffold_6G00391720
rosa_rugosa Rorug04G0096700 Rorug05G0284300 Rorug06G0059800 Rorug06G0059900 Rorug06G0060000 Rorug06G0060100 Rorug06G0060200 Rorug06G0127700 Rorug06G0243400
rosa_samantha Rh1AG033000 Rh1AG274600 Rh1DG069700 Rh2DG069900 Rh2DG210700 Rh2DG560100 Rh3AG245500 Rh3BG095400 Rh4AG018100 Rh4AG084900 Rh4AG177900 Rh4CG092300 Rh4CG194700 Rh5BG350600 Rh6BG362400 Rh7DG198200 Rh7DG403500
rosa_wichuraiana Rw1G008260 Rw1G035940 Rw2G027180 Rw4G003470 Rw4G010610 Rw5G037240 Rw6G036490 Rw7G015690 Rw7G028950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 380
Acc36I ACCTGC 2 cut(s) 445, 697
AccBSI CCGCTC 1 cut(s) 1791
AccI GTMKAC 3 cut(s) 499, 1034, 1258
AccII CGCG 1 cut(s) 414
AciI CCGC 2 cut(s) 218, 1791
AclWI GGATC 4 cut(s) 455, 787, 1126, 1477
AcuI CTGAAG 4 cut(s) 408, 630, 696, 1403
AfaI GTAC 5 cut(s) 34, 212, 687, 942, 1098
AfiI CCNNNNNNNGG 5 cut(s) 44, 51, 250, 1115, 1759
AflII CTTAAG 1 cut(s) 320
AgsI TTSAA 2 cut(s) 902, 1731
AluBI AGCT 9 cut(s) 122, 418, 527, 638, 971, 1235, 1538, 1589, 1780
AluI AGCT 9 cut(s) 122, 418, 527, 638, 971, 1235, 1538, 1589, 1780
Alw21I GWGCWC 1 cut(s) 874
Alw26I GTCTC 4 cut(s) 366, 476, 1559, 1763
AlwI GGATC 4 cut(s) 455, 787, 1126, 1477
AlwNI CAGNNNCTG 1 cut(s) 1318
AoxI GGCC 2 cut(s) 519, 1314
ApeKI GCWGC 8 cut(s) 180, 418, 971, 1025, 1214, 1241, 1469, 1586
AspLEI GCGC 2 cut(s) 111, 763
AspS9I GGNCC 4 cut(s) 240, 1226, 1315, 1739
AsuC2I CCSGG 1 cut(s) 46
AsuHPI GGTGA 2 cut(s) 325, 1450
AsuNHI GCTAGC 1 cut(s) 763
AvaII GGWCC 3 cut(s) 240, 1226, 1739
BanII GRGCYC 1 cut(s) 509
BauI CACGAG 1 cut(s) 1590
BbsI GAAGAC 2 cut(s) 618, 669
Bbv12I GWGCWC 1 cut(s) 874
BbvCI CCTCAGC 2 cut(s) 523, 1776
BbvI GCAGC 8 cut(s) 192, 405, 958, 1037, 1201, 1228, 1456, 1598
BccI CCATC 5 cut(s) 472, 796, 1108, 1544, 1594
BceAI ACGGC 1 cut(s) 27
BciVI GTATCC 3 cut(s) 919, 1130, 1288
BcnI CCSGG 1 cut(s) 46
BcoDI GTCTC 4 cut(s) 366, 476, 1559, 1763
BfaI CTAG 4 cut(s) 221, 764, 950, 1515
BfmI CTRYAG 4 cut(s) 645, 876, 1443, 1470
BfoI RGCGCY 1 cut(s) 764
BfrI CTTAAG 1 cut(s) 320
BfuAI ACCTGC 2 cut(s) 445, 697
BfuI GTATCC 3 cut(s) 919, 1130, 1288
BglII AGATCT 1 cut(s) 1490
BisI GCNGC 9 cut(s) 181, 218, 419, 972, 1026, 1215, 1242, 1470, 1587
BlsI GCNGC 9 cut(s) 182, 219, 420, 973, 1027, 1216, 1243, 1471, 1588
BmcAI AGTACT 3 cut(s) 212, 942, 1098
Bme1390I CCNGG 1 cut(s) 46
Bme18I GGWCC 3 cut(s) 240, 1226, 1739
BmgT120I GGNCC 4 cut(s) 240, 1226, 1315, 1739
BmiI GGNNCC 2 cut(s) 242, 1751
BmrFI CCNGG 1 cut(s) 46
BmrI ACTGGG 1 cut(s) 512
BmsI GCATC 5 cut(s) 414, 753, 896, 1282, 1456
BmtI GCTAGC 1 cut(s) 767
BmuI ACTGGG 1 cut(s) 512
BpiI GAAGAC 2 cut(s) 618, 669
BplI GAGNNNNNCTC 2 cut(s) 506, 538
BpmI CTGGAG 1 cut(s) 921
Bpu10I CCTNAGC 2 cut(s) 523, 1776
BpuMI CCSGG 1 cut(s) 46
BsaI GGTCTC 1 cut(s) 1559
BsaJI CCNNGG 3 cut(s) 913, 1461, 1742
BsaWI WCCGGW 1 cut(s) 250
BsaXI ACNNNNNCTCC 2 cut(s) 919, 949
Bsc4I CCNNNNNNNGG 5 cut(s) 44, 51, 250, 1115, 1759
Bse1I ACTGG 5 cut(s) 63, 507, 938, 1024, 1229
Bse3DI GCAATG 6 cut(s) 104, 166, 477, 615, 1035, 1121
BseDI CCNNGG 3 cut(s) 913, 1461, 1742
BseGI GGATG 1 cut(s) 1471
BseLI CCNNNNNNNGG 5 cut(s) 44, 51, 250, 1115, 1759
BseMI GCAATG 6 cut(s) 104, 166, 477, 615, 1035, 1121
BseMII CTCAG 7 cut(s) 288, 354, 537, 598, 684, 1758, 1790
BseNI ACTGG 5 cut(s) 63, 507, 938, 1024, 1229
BseRI GAGGAG 1 cut(s) 572
BseXI GCAGC 8 cut(s) 192, 405, 958, 1037, 1201, 1228, 1456, 1598
BsgI GTGCAG 1 cut(s) 1044
Bsh1236I CGCG 1 cut(s) 414
BshFI GGCC 2 cut(s) 521, 1316
BsiHKAI GWGCWC 1 cut(s) 874
BsiSI CCGG 3 cut(s) 45, 251, 836
BslFI GGGAC 2 cut(s) 368, 1775
BslI CCNNNNNNNGG 5 cut(s) 44, 51, 250, 1115, 1759
BsmAI GTCTC 4 cut(s) 366, 476, 1559, 1763
BsmFI GGGAC 2 cut(s) 368, 1775
BsnI GGCC 2 cut(s) 521, 1316
Bso31I GGTCTC 1 cut(s) 1559
Bsp1286I GDGCHC 2 cut(s) 509, 874
Bsp143I GATC 8 cut(s) 203, 349, 460, 779, 1071, 1118, 1482, 1490
Bsp19I CCATGG 1 cut(s) 1742
BspACI CCGC 2 cut(s) 218, 1791
BspANI GGCC 2 cut(s) 521, 1316
BspCNI CTCAG 7 cut(s) 289, 355, 536, 597, 685, 1759, 1789
BspFNI CGCG 1 cut(s) 414
BspLI GGNNCC 2 cut(s) 242, 1751
BspMAI CTGCAG 2 cut(s) 880, 1474
BspMI ACCTGC 2 cut(s) 445, 697
BspOI GCTAGC 1 cut(s) 767
BspPI GGATC 4 cut(s) 455, 787, 1126, 1477
BspQI GCTCTTC 1 cut(s) 903
BspTI CTTAAG 1 cut(s) 320
BspTNI GGTCTC 1 cut(s) 1559
BsrBI CCGCTC 1 cut(s) 1791
BsrDI GCAATG 6 cut(s) 104, 166, 477, 615, 1035, 1121
BsrI ACTGG 5 cut(s) 63, 507, 938, 1024, 1229
BssECI CCNNGG 3 cut(s) 913, 1461, 1742
BssMI GATC 8 cut(s) 203, 349, 460, 779, 1071, 1118, 1482, 1490
BssNAI GTATAC 1 cut(s) 1259
BssSI CACGAG 1 cut(s) 1590
BssT1I CCWWGG 2 cut(s) 1461, 1742
Bst1107I GTATAC 1 cut(s) 1259
Bst2BI CACGAG 1 cut(s) 1590
Bst4CI ACNGT 4 cut(s) 167, 210, 1039, 1057
Bst6I CTCTTC 2 cut(s) 903, 1691
BstAFI CTTAAG 1 cut(s) 320
BstAPI GCANNNNNTGC 3 cut(s) 626, 869, 1592
BstC8I GCNNGC 5 cut(s) 333, 416, 765, 1697, 1701
BstDSI CCRYGG 2 cut(s) 913, 1742
BstF5I GGATG 1 cut(s) 1471
BstFNI CGCG 1 cut(s) 414
BstH2I RGCGCY 1 cut(s) 764
BstHHI GCGC 2 cut(s) 111, 763
BstKTI GATC 8 cut(s) 206, 352, 463, 782, 1074, 1121, 1485, 1493
BstMAI GTCTC 4 cut(s) 366, 476, 1559, 1763
BstMBI GATC 8 cut(s) 203, 349, 460, 779, 1071, 1118, 1482, 1490
BstNSI RCATGY 1 cut(s) 335
BstSCI CCNGG 1 cut(s) 44
BstSFI CTRYAG 4 cut(s) 645, 876, 1443, 1470
BstUI CGCG 1 cut(s) 414
BstV1I GCAGC 8 cut(s) 192, 405, 958, 1037, 1201, 1228, 1456, 1598
BstV2I GAAGAC 2 cut(s) 618, 669
BstX2I RGATCY 3 cut(s) 779, 1482, 1490
BstYI RGATCY 3 cut(s) 779, 1482, 1490
BstZ17I GTATAC 1 cut(s) 1259
BsuI GTATCC 3 cut(s) 919, 1130, 1288
BsuRI GGCC 2 cut(s) 521, 1316
BtgI CCRYGG 2 cut(s) 913, 1742
BtgZI GCGATG 1 cut(s) 215
BtsCI GGATG 1 cut(s) 1471
BtsIMutI CAGTG 6 cut(s) 70, 172, 592, 720, 1516, 1764
BveI ACCTGC 2 cut(s) 445, 697
Cac8I GCNNGC 5 cut(s) 333, 416, 765, 1697, 1701
CaiI CAGNNNCTG 1 cut(s) 1318
CfoI GCGC 2 cut(s) 111, 763
Cfr13I GGNCC 4 cut(s) 240, 1226, 1315, 1739
Csp6I GTAC 5 cut(s) 33, 211, 686, 941, 1097
CviAII CATG 6 cut(s) 332, 1192, 1378, 1597, 1690, 1743
CviQI GTAC 5 cut(s) 33, 211, 686, 941, 1097
DpnI GATC 8 cut(s) 205, 351, 462, 781, 1073, 1120, 1484, 1492
DpnII GATC 8 cut(s) 203, 349, 460, 779, 1071, 1118, 1482, 1490
DraI TTTAAA 1 cut(s) 1083
DrdI GACNNNNNNGTC 1 cut(s) 380
DseDI GACNNNNNNGTC 1 cut(s) 380
Eam1104I CTCTTC 2 cut(s) 903, 1691
EarI CTCTTC 2 cut(s) 903, 1691
Eco130I CCWWGG 2 cut(s) 1461, 1742
Eco24I GRGCYC 1 cut(s) 509
Eco31I GGTCTC 1 cut(s) 1559
Eco32I GATATC 1 cut(s) 810
Eco47I GGWCC 3 cut(s) 240, 1226, 1739
Eco57I CTGAAG 4 cut(s) 408, 630, 696, 1403
EcoO109I RGGNCCY 2 cut(s) 240, 1315
EcoRV GATATC 1 cut(s) 810
EcoT14I CCWWGG 2 cut(s) 1461, 1742
EcoT22I ATGCAT 1 cut(s) 333
EcoT38I GRGCYC 1 cut(s) 509
ErhI CCWWGG 2 cut(s) 1461, 1742
FaeI CATG 6 cut(s) 335, 1195, 1381, 1600, 1693, 1746
FalI AAGNNNNNCTT 2 cut(s) 622, 654
FaqI GGGAC 2 cut(s) 368, 1775
FatI CATG 6 cut(s) 331, 1191, 1377, 1596, 1689, 1742
FauNDI CATATG 1 cut(s) 1582
FblI GTMKAC 3 cut(s) 499, 1034, 1258
Fnu4HI GCNGC 9 cut(s) 181, 218, 419, 972, 1026, 1215, 1242, 1470, 1587
FokI GGATG 1 cut(s) 1478
FriOI GRGCYC 1 cut(s) 509
Fsp4HI GCNGC 9 cut(s) 181, 218, 419, 972, 1026, 1215, 1242, 1470, 1587
FspBI CTAG 4 cut(s) 221, 764, 950, 1515
GlaI GCGC 2 cut(s) 110, 762
GluI GCNGC 9 cut(s) 181, 218, 419, 972, 1026, 1215, 1242, 1470, 1587
GsuI CTGGAG 1 cut(s) 921
HaeII RGCGCY 1 cut(s) 764
HaeIII GGCC 2 cut(s) 521, 1316
HapII CCGG 3 cut(s) 45, 251, 836
HhaI GCGC 2 cut(s) 111, 763
Hin1II CATG 6 cut(s) 335, 1195, 1381, 1600, 1693, 1746
Hin6I GCGC 2 cut(s) 109, 761
HinP1I GCGC 2 cut(s) 109, 761
HincII GTYRAC 2 cut(s) 720, 1520
HindII GTYRAC 2 cut(s) 720, 1520
HindIII AAGCTT 1 cut(s) 636
HinfI GANTC 2 cut(s) 316, 1681
HpaII CCGG 3 cut(s) 45, 251, 836
HphI GGTGA 2 cut(s) 325, 1450
Hpy166II GTNNAC 7 cut(s) 35, 500, 720, 1035, 1259, 1458, 1520
Hpy188I TCNGA 6 cut(s) 277, 298, 795, 1251, 1573, 1721
Hpy188III TCNNGA 2 cut(s) 353, 1186
Hpy8I GTNNAC 7 cut(s) 35, 500, 720, 1035, 1259, 1458, 1520
HpyAV CCTTC 4 cut(s) 48, 231, 1292, 1653
HpyCH4III ACNGT 4 cut(s) 167, 210, 1039, 1057
Hsp92II CATG 6 cut(s) 335, 1195, 1381, 1600, 1693, 1746
HspAI GCGC 2 cut(s) 109, 761
Kzo9I GATC 8 cut(s) 203, 349, 460, 779, 1071, 1118, 1482, 1490
LguI GCTCTTC 1 cut(s) 903
LmnI GCTCC 3 cut(s) 340, 877, 1645
Lsp1109I GCAGC 8 cut(s) 192, 405, 958, 1037, 1201, 1228, 1456, 1598
LweI GCATC 5 cut(s) 414, 753, 896, 1282, 1456
MaeI CTAG 4 cut(s) 221, 764, 950, 1515
MaeIII GTNAC 7 cut(s) 65, 79, 223, 981, 1015, 1057, 1783
MalI GATC 8 cut(s) 205, 351, 462, 781, 1073, 1120, 1484, 1492
MbiI CCGCTC 1 cut(s) 1791
MboI GATC 8 cut(s) 203, 349, 460, 779, 1071, 1118, 1482, 1490
MboII GAAGA 8 cut(s) 623, 674, 702, 890, 1151, 1179, 1396, 1678
MfeI CAATTG 3 cut(s) 266, 441, 456
MflI RGATCY 3 cut(s) 779, 1482, 1490
MhlI GDGCHC 2 cut(s) 509, 874
MlyI GAGTC 1 cut(s) 1675
Mph1103I ATGCAT 1 cut(s) 333
MseI TTAA 7 cut(s) 321, 549, 570, 921, 1067, 1082, 1359
MslI CAYNNNNRTG 3 cut(s) 470, 1190, 1563
MspA1I CMGCKG 1 cut(s) 527
MspCI CTTAAG 1 cut(s) 320
MspI CCGG 3 cut(s) 45, 251, 836
MspR9I CCNGG 1 cut(s) 46
MunI CAATTG 3 cut(s) 266, 441, 456
MvnI CGCG 1 cut(s) 414
NciI CCSGG 1 cut(s) 46
NcoI CCATGG 1 cut(s) 1742
NdeI CATATG 1 cut(s) 1582
NdeII GATC 8 cut(s) 203, 349, 460, 779, 1071, 1118, 1482, 1490
NheI GCTAGC 1 cut(s) 763
NlaIII CATG 6 cut(s) 335, 1195, 1381, 1600, 1693, 1746
NlaIV GGNNCC 2 cut(s) 242, 1751
NmuCI GTSAC 2 cut(s) 65, 1057
NsiI ATGCAT 1 cut(s) 333
NspI RCATGY 1 cut(s) 335
PaeI GCATGC 1 cut(s) 335
PciSI GCTCTTC 1 cut(s) 903
PfeI GAWTC 1 cut(s) 316
PkrI GCNGC 9 cut(s) 182, 219, 420, 973, 1027, 1216, 1243, 1471, 1588
PleI GAGTC 1 cut(s) 1675
PpsI GAGTC 1 cut(s) 1675
PpuMI RGGWCCY 1 cut(s) 240
Psp5II RGGWCCY 1 cut(s) 240
PspN4I GGNNCC 2 cut(s) 242, 1751
PspPI GGNCC 4 cut(s) 240, 1226, 1315, 1739
PspPPI RGGWCCY 1 cut(s) 240
PstI CTGCAG 2 cut(s) 880, 1474
PstNI CAGNNNCTG 1 cut(s) 1318
PsuI RGATCY 3 cut(s) 779, 1482, 1490
PvuII CAGCTG 1 cut(s) 527
RsaI GTAC 5 cut(s) 34, 212, 687, 942, 1098
RsaNI GTAC 5 cut(s) 33, 211, 686, 941, 1097
RseI CAYNNNNRTG 3 cut(s) 470, 1190, 1563
SapI GCTCTTC 1 cut(s) 903
SaqAI TTAA 7 cut(s) 321, 549, 570, 921, 1067, 1082, 1359
SatI GCNGC 9 cut(s) 181, 218, 419, 972, 1026, 1215, 1242, 1470, 1587
Sau3AI GATC 8 cut(s) 203, 349, 460, 779, 1071, 1118, 1482, 1490
Sau96I GGNCC 4 cut(s) 240, 1226, 1315, 1739
ScaI AGTACT 3 cut(s) 212, 942, 1098
SchI GAGTC 1 cut(s) 1675
ScrFI CCNGG 1 cut(s) 46
SduI GDGCHC 2 cut(s) 509, 874
SfaNI GCATC 5 cut(s) 414, 753, 896, 1282, 1456
SfcI CTRYAG 4 cut(s) 645, 876, 1443, 1470
SinI GGWCC 3 cut(s) 240, 1226, 1739
SmiMI CAYNNNNRTG 3 cut(s) 470, 1190, 1563
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
SphI GCATGC 1 cut(s) 335
SsiI CCGC 2 cut(s) 218, 1791
SspMI CTAG 4 cut(s) 221, 764, 950, 1515
StyD4I CCNGG 1 cut(s) 44
StyI CCWWGG 2 cut(s) 1461, 1742
TaaI ACNGT 4 cut(s) 167, 210, 1039, 1057
TaqI TCGA 1 cut(s) 1548
TaqII GACCGA 1 cut(s) 1643
TatI WGTACW 3 cut(s) 210, 940, 1096
TauI GCSGC 1 cut(s) 220
TfiI GAWTC 1 cut(s) 316
Tru1I TTAA 7 cut(s) 321, 549, 570, 921, 1067, 1082, 1359
Tru9I TTAA 7 cut(s) 321, 549, 570, 921, 1067, 1082, 1359
TscAI CASTG 6 cut(s) 70, 172, 592, 720, 1516, 1771
TseFI GTSAC 2 cut(s) 65, 1057
TseI GCWGC 8 cut(s) 180, 418, 971, 1025, 1214, 1241, 1469, 1586
Tsp45I GTSAC 2 cut(s) 65, 1057
TspDTI ATGAA 9 cut(s) 17, 93, 372, 554, 675, 1323, 1366, 1398, 1678
TspGWI ACGGA 2 cut(s) 131, 902
TspRI CASTG 6 cut(s) 70, 172, 592, 720, 1516, 1771
Vha464I CTTAAG 1 cut(s) 320
VpaK11BI GGWCC 3 cut(s) 240, 1226, 1739
XceI RCATGY 1 cut(s) 335
XcmI CCANNNNNNNNNTGG 2 cut(s) 26, 1603
XmiI GTMKAC 3 cut(s) 499, 1034, 1258
XspI CTAG 4 cut(s) 221, 764, 950, 1515
ZrmI AGTACT 3 cut(s) 212, 942, 1098
Zsp2I ATGCAT 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.