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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 14 |
| Acc36I | ACCTGC | 1 cut(s) | 14 |
| AciI | CCGC | 4 cut(s) | 410, 443, 470, 551 |
| AclWI | GGATC | 1 cut(s) | 32 |
| AcsI | RAATTY | 3 cut(s) | 194, 419, 505 |
| AcyI | GRCGYC | 1 cut(s) | 365 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 160, 455, 482, 539, 593, 620, 647, 677 |
| AgeI | ACCGGT | 1 cut(s) | 593 |
| AgsI | TTSAA | 4 cut(s) | 278, 434, 453, 759 |
| Alw26I | GTCTC | 2 cut(s) | 137, 212 |
| AlwI | GGATC | 1 cut(s) | 32 |
| Ama87I | CYCGRG | 2 cut(s) | 134, 677 |
| AoxI | GGCC | 1 cut(s) | 50 |
| ApeKI | GCWGC | 2 cut(s) | 101, 439 |
| ApoI | RAATTY | 3 cut(s) | 194, 419, 505 |
| AsiGI | ACCGGT | 1 cut(s) | 593 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 419 |
| AsuC2I | CCSGG | 4 cut(s) | 540, 648, 678, 679 |
| AsuHPI | GGTGA | 2 cut(s) | 38, 734 |
| AsuII | TTCGAA | 1 cut(s) | 423 |
| AvaI | CYCGRG | 2 cut(s) | 134, 677 |
| BbvI | GCAGC | 2 cut(s) | 113, 451 |
| BciVI | GTATCC | 3 cut(s) | 245, 455, 647 |
| BcnI | CCSGG | 4 cut(s) | 540, 648, 678, 679 |
| BcoDI | GTCTC | 2 cut(s) | 137, 212 |
| BfaI | CTAG | 1 cut(s) | 777 |
| BfmI | CTRYAG | 1 cut(s) | 33 |
| BfuAI | ACCTGC | 1 cut(s) | 14 |
| BfuI | GTATCC | 3 cut(s) | 245, 455, 647 |
| BglII | AGATCT | 1 cut(s) | 427 |
| BisI | GCNGC | 3 cut(s) | 102, 440, 443 |
| BlsI | GCNGC | 3 cut(s) | 103, 441, 444 |
| Bme1390I | CCNGG | 4 cut(s) | 540, 648, 678, 679 |
| BmeT110I | CYCGRG | 2 cut(s) | 134, 677 |
| BmrFI | CCNGG | 4 cut(s) | 540, 648, 678, 679 |
| BmsI | GCATC | 1 cut(s) | 559 |
| Bpu14I | TTCGAA | 1 cut(s) | 423 |
| BpuEI | CTTGAG | 1 cut(s) | 39 |
| BpuMI | CCSGG | 4 cut(s) | 540, 648, 678, 679 |
| BsaHI | GRCGYC | 1 cut(s) | 365 |
| BsaJI | CCNNGG | 6 cut(s) | 168, 538, 646, 676, 677, 678 |
| BsaWI | WCCGGW | 1 cut(s) | 593 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 160, 455, 482, 539, 593, 620, 647, 677 |
| Bse118I | RCCGGY | 1 cut(s) | 593 |
| Bse1I | ACTGG | 1 cut(s) | 625 |
| BseDI | CCNNGG | 6 cut(s) | 168, 538, 646, 676, 677, 678 |
| BseGI | GGATG | 2 cut(s) | 10, 790 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 160, 455, 482, 539, 593, 620, 647, 677 |
| BseNI | ACTGG | 1 cut(s) | 625 |
| BseXI | GCAGC | 2 cut(s) | 113, 451 |
| BshFI | GGCC | 1 cut(s) | 52 |
| BshTI | ACCGGT | 1 cut(s) | 593 |
| BsiHKCI | CYCGRG | 2 cut(s) | 134, 677 |
| BsiSI | CCGG | 4 cut(s) | 540, 594, 648, 678 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 160, 455, 482, 539, 593, 620, 647, 677 |
| BsmAI | GTCTC | 2 cut(s) | 137, 212 |
| BsmI | GAATGC | 2 cut(s) | 491, 572 |
| BsnI | GGCC | 1 cut(s) | 52 |
| BsoBI | CYCGRG | 2 cut(s) | 134, 677 |
| Bsp119I | TTCGAA | 1 cut(s) | 423 |
| Bsp143I | GATC | 4 cut(s) | 37, 109, 289, 427 |
| BspACI | CCGC | 4 cut(s) | 410, 443, 470, 551 |
| BspANI | GGCC | 1 cut(s) | 52 |
| BspMAI | CTGCAG | 1 cut(s) | 37 |
| BspMI | ACCTGC | 1 cut(s) | 14 |
| BspPI | GGATC | 1 cut(s) | 32 |
| BspQI | GCTCTTC | 3 cut(s) | 303, 324, 429 |
| BspT104I | TTCGAA | 1 cut(s) | 423 |
| BsrFI | RCCGGY | 1 cut(s) | 593 |
| BsrI | ACTGG | 1 cut(s) | 625 |
| BssAI | RCCGGY | 1 cut(s) | 593 |
| BssECI | CCNNGG | 6 cut(s) | 168, 538, 646, 676, 677, 678 |
| BssMI | GATC | 4 cut(s) | 37, 109, 289, 427 |
| BssNI | GRCGYC | 1 cut(s) | 365 |
| BssT1I | CCWWGG | 1 cut(s) | 168 |
| Bst4CI | ACNGT | 1 cut(s) | 131 |
| Bst6I | CTCTTC | 4 cut(s) | 213, 303, 324, 429 |
| BstACI | GRCGYC | 1 cut(s) | 365 |
| BstBI | TTCGAA | 1 cut(s) | 423 |
| BstF5I | GGATG | 2 cut(s) | 10, 790 |
| BstKTI | GATC | 4 cut(s) | 40, 112, 292, 430 |
| BstMAI | GTCTC | 2 cut(s) | 137, 212 |
| BstMBI | GATC | 4 cut(s) | 37, 109, 289, 427 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 77 |
| BstNSI | RCATGY | 1 cut(s) | 234 |
| BstSCI | CCNGG | 4 cut(s) | 538, 646, 676, 677 |
| BstSFI | CTRYAG | 1 cut(s) | 33 |
| BstV1I | GCAGC | 2 cut(s) | 113, 451 |
| BstX2I | RGATCY | 2 cut(s) | 37, 427 |
| BstYI | RGATCY | 2 cut(s) | 37, 427 |
| BsuI | GTATCC | 3 cut(s) | 245, 455, 647 |
| BsuRI | GGCC | 1 cut(s) | 52 |
| BtsCI | GGATG | 2 cut(s) | 10, 790 |
| BtsIMutI | CAGTG | 1 cut(s) | 618 |
| BveI | ACCTGC | 1 cut(s) | 14 |
| Cfr10I | RCCGGY | 1 cut(s) | 593 |
| Cfr9I | CCCGGG | 1 cut(s) | 677 |
| CseI | GACGC | 1 cut(s) | 373 |
| CspAI | ACCGGT | 1 cut(s) | 593 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 466, 501 |
| CviAII | CATG | 1 cut(s) | 231 |
| CviJI | RGCY | 4 cut(s) | 52, 442, 607, 754 |
| CviKI_1 | RGCY | 4 cut(s) | 52, 442, 607, 754 |
| DpnI | GATC | 4 cut(s) | 39, 111, 291, 429 |
| DpnII | GATC | 4 cut(s) | 37, 109, 289, 427 |
| DraI | TTTAAA | 1 cut(s) | 801 |
| Eam1104I | CTCTTC | 4 cut(s) | 213, 303, 324, 429 |
| EarI | CTCTTC | 4 cut(s) | 213, 303, 324, 429 |
| Eco130I | CCWWGG | 1 cut(s) | 168 |
| Eco147I | AGGCCT | 1 cut(s) | 52 |
| Eco32I | GATATC | 1 cut(s) | 686 |
| Eco88I | CYCGRG | 2 cut(s) | 134, 677 |
| EcoRI | GAATTC | 2 cut(s) | 194, 419 |
| EcoRV | GATATC | 1 cut(s) | 686 |
| EcoT14I | CCWWGG | 1 cut(s) | 168 |
| EcoT22I | ATGCAT | 1 cut(s) | 574 |
| ErhI | CCWWGG | 1 cut(s) | 168 |
| FaeI | CATG | 1 cut(s) | 234 |
| FaiI | YATR | 6 cut(s) | 143, 232, 341, 520, 547, 795 |
| FatI | CATG | 1 cut(s) | 230 |
| FauI | CCCGC | 1 cut(s) | 558 |
| Fnu4HI | GCNGC | 3 cut(s) | 102, 440, 443 |
| FokI | GGATG | 2 cut(s) | 17, 797 |
| Fsp4HI | GCNGC | 3 cut(s) | 102, 440, 443 |
| FspBI | CTAG | 1 cut(s) | 777 |
| GluI | GCNGC | 3 cut(s) | 102, 440, 443 |
| HaeIII | GGCC | 1 cut(s) | 52 |
| HapII | CCGG | 4 cut(s) | 540, 594, 648, 678 |
| HgaI | GACGC | 1 cut(s) | 373 |
| Hin1I | GRCGYC | 1 cut(s) | 365 |
| Hin1II | CATG | 1 cut(s) | 234 |
| HinfI | GANTC | 1 cut(s) | 725 |
| HpaII | CCGG | 4 cut(s) | 540, 594, 648, 678 |
| HphI | GGTGA | 2 cut(s) | 38, 734 |
| Hpy188III | TCNNGA | 6 cut(s) | 134, 136, 278, 390, 431, 777 |
| HpyAV | CCTTC | 6 cut(s) | 54, 58, 91, 459, 625, 765 |
| HpyCH4III | ACNGT | 1 cut(s) | 131 |
| HpyCH4V | TGCA | 7 cut(s) | 23, 35, 244, 491, 518, 545, 572 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 77 |
| Hsp92I | GRCGYC | 1 cut(s) | 365 |
| Hsp92II | CATG | 1 cut(s) | 234 |
| Kzo9I | GATC | 4 cut(s) | 37, 109, 289, 427 |
| LguI | GCTCTTC | 3 cut(s) | 303, 324, 429 |
| LpnPI | CCDG | 6 cut(s) | 9, 553, 606, 607, 661, 691 |
| Lsp1109I | GCAGC | 2 cut(s) | 113, 451 |
| LweI | GCATC | 1 cut(s) | 559 |
| MaeI | CTAG | 1 cut(s) | 777 |
| MalI | GATC | 4 cut(s) | 39, 111, 291, 429 |
| MboI | GATC | 4 cut(s) | 37, 109, 289, 427 |
| MboII | GAAGA | 6 cut(s) | 230, 320, 341, 415, 437, 446 |
| MflI | RGATCY | 2 cut(s) | 37, 427 |
| Mph1103I | ATGCAT | 1 cut(s) | 574 |
| MroXI | GAANNNNTTC | 1 cut(s) | 419 |
| MseI | TTAA | 4 cut(s) | 297, 590, 744, 800 |
| MspI | CCGG | 4 cut(s) | 540, 594, 648, 678 |
| MspR9I | CCNGG | 4 cut(s) | 540, 648, 678, 679 |
| Mva1269I | GAATGC | 2 cut(s) | 491, 572 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 77 |
| NciI | CCSGG | 4 cut(s) | 540, 648, 678, 679 |
| NdeII | GATC | 4 cut(s) | 37, 109, 289, 427 |
| NlaIII | CATG | 1 cut(s) | 234 |
| NsiI | ATGCAT | 1 cut(s) | 574 |
| NspI | RCATGY | 1 cut(s) | 234 |
| NspV | TTCGAA | 1 cut(s) | 423 |
| PaeR7I | CTCGAG | 1 cut(s) | 134 |
| PaqCI | CACCTGC | 1 cut(s) | 14 |
| PceI | AGGCCT | 1 cut(s) | 52 |
| PciSI | GCTCTTC | 3 cut(s) | 303, 324, 429 |
| PctI | GAATGC | 2 cut(s) | 491, 572 |
| PdmI | GAANNNNTTC | 1 cut(s) | 419 |
| PfeI | GAWTC | 1 cut(s) | 725 |
| PinAI | ACCGGT | 1 cut(s) | 593 |
| PkrI | GCNGC | 3 cut(s) | 103, 441, 444 |
| PstI | CTGCAG | 1 cut(s) | 37 |
| PsuI | RGATCY | 2 cut(s) | 37, 427 |
| SapI | GCTCTTC | 3 cut(s) | 303, 324, 429 |
| SaqAI | TTAA | 4 cut(s) | 297, 590, 744, 800 |
| SatI | GCNGC | 3 cut(s) | 102, 440, 443 |
| Sau3AI | GATC | 4 cut(s) | 37, 109, 289, 427 |
| ScrFI | CCNGG | 4 cut(s) | 540, 648, 678, 679 |
| SfaNI | GCATC | 1 cut(s) | 559 |
| SfcI | CTRYAG | 1 cut(s) | 33 |
| Sfr274I | CTCGAG | 1 cut(s) | 134 |
| SfuI | TTCGAA | 1 cut(s) | 423 |
| SlaI | CTCGAG | 1 cut(s) | 134 |
| SmaI | CCCGGG | 1 cut(s) | 679 |
| SmiI | ATTTAAAT | 1 cut(s) | 801 |
| SmlI | CTYRAG | 2 cut(s) | 54, 134 |
| SmoI | CTYRAG | 2 cut(s) | 54, 134 |
| SseBI | AGGCCT | 1 cut(s) | 52 |
| SsiI | CCGC | 4 cut(s) | 410, 443, 470, 551 |
| SspMI | CTAG | 1 cut(s) | 777 |
| StuI | AGGCCT | 1 cut(s) | 52 |
| StyD4I | CCNGG | 4 cut(s) | 538, 646, 676, 677 |
| StyI | CCWWGG | 1 cut(s) | 168 |
| SwaI | ATTTAAAT | 1 cut(s) | 801 |
| TaaI | ACNGT | 1 cut(s) | 131 |
| TaqI | TCGA | 6 cut(s) | 135, 186, 202, 249, 292, 423 |
| TauI | GCSGC | 1 cut(s) | 445 |
| TfiI | GAWTC | 1 cut(s) | 725 |
| Tru1I | TTAA | 4 cut(s) | 297, 590, 744, 800 |
| Tru9I | TTAA | 4 cut(s) | 297, 590, 744, 800 |
| TscAI | CASTG | 1 cut(s) | 625 |
| TseI | GCWGC | 2 cut(s) | 101, 439 |
| TspGWI | ACGGA | 1 cut(s) | 100 |
| TspMI | CCCGGG | 1 cut(s) | 677 |
| TspRI | CASTG | 1 cut(s) | 625 |
| XapI | RAATTY | 3 cut(s) | 194, 419, 505 |
| XbaI | TCTAGA | 1 cut(s) | 776 |
| XceI | RCATGY | 1 cut(s) | 234 |
| XhoI | CTCGAG | 1 cut(s) | 134 |
| XmaI | CCCGGG | 1 cut(s) | 677 |
| XmnI | GAANNNNTTC | 1 cut(s) | 419 |
| XspI | CTAG | 1 cut(s) | 777 |
| Zsp2I | ATGCAT | 1 cut(s) | 574 |