Rmu_sc0002011.1_g000030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002011.1
OG0000127
Physical Location & Seq
Reverse (-)
132734 .. 134313
1580 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002011.1_g000030.1.cds

Sequence Viewer

Length: 675 bp
atgccagcgcggcccaaaaaactgacgctcggggagacgcgccgcgggggggaagtgaagcgcagtttcttgtcgtctagcggggacaacgtctgcaggcgcgtagcagccactaatgaagacattcaattgtgcaagtcttggagggctgttagccaagatccgggaaagggtacggaacgaagaaaagatgatctatggttagagctacgtcaagcacaagatttgtggagagctgcgatgaccaaatctaaaggaaaacaaaaaaaaggtgatttcattaatttagaatgttacgagattgttaaggggtttcaacaatttgaagacattccaaaccattcctcttcggctggaggaacctccaggggaggaactgaacggatgcacacacaacaatccgctcctgattctcatgtccagttggacatagatgcagatgaggtaaacgccgatgcaactccaaatccttcggtgaggcctcaaggaaagaaggctgccaaagaagctcttcggaaaggaaagaaagcatctaatgattccagtcctctgacagccgctgtggagactatagcaaccaaccaaacatcaatgatgtctgccaaggagaaacgtgatgaggaatatgctcgacatctccgtgaccaacaacaacgagattatatacgcttgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

224

Amino Acids

25.04

Weight (kDa)

9.42

Isoelectric Point (pI)

57.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000127)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02381 FvH4_1g19463 FvH4_1g28433 FvH4_2g16143 FvH4_2g18491 FvH4_2g27711 FvH4_3g19631 FvH4_3g23573 FvH4_4g35743 FvH4_5g23701 FvH4_6g19603 FvH4_6g39781 FvH4_6g40561 FvH4_7g02563 FvH4_7g11472 FvH4_7g17530
rosa_chinensis RchiOBHm_Chr1g0315991 RchiOBHm_Chr1g0318371 RchiOBHm_Chr1g0328341 RchiOBHm_Chr1g0331431 RchiOBHm_Chr1g0344801 RchiOBHm_Chr1g0371461 RchiOBHm_Chr1g0379261 RchiOBHm_Chr2g0117661 RchiOBHm_Chr5g0011791 RchiOBHm_Chr5g0020991 RchiOBHm_Chr5g0060631 RchiOBHm_Chr5g0064181 RchiOBHm_Chr5g0080181 RchiOBHm_Chr6g0254691 RchiOBHm_Chr6g0260101 RchiOBHm_Chr6g0290901 RchiOBHm_Chr7g0201691
rosa_laevigata RLG00000003529 RLG00000009370 RLG00000013568
rosa_multiflora Rmu_co8437743.1_g000001 Rmu_sc0000063.1_g000028 Rmu_sc0000098.1_g000004 Rmu_sc0000166.1_g000028 Rmu_sc0000258.1_g000102 Rmu_sc0000288.1_g000018 Rmu_sc0000333.1_g000043 Rmu_sc0000451.1_g000011 Rmu_sc0000455.1_g000003 Rmu_sc0000479.1_g000002 Rmu_sc0000687.1_g000014 Rmu_sc0000733.1_g000024 Rmu_sc0000736.1_g000001 Rmu_sc0000745.1_g000017 Rmu_sc0000760.1_g000031 Rmu_sc0000776.1_g000044 Rmu_sc0000828.1_g000011 Rmu_sc0000830.1_g000027 Rmu_sc0000857.1_g000025 Rmu_sc0000864.1_g000013 Rmu_sc0001016.1_g000034 Rmu_sc0001016.1_g000035 Rmu_sc0001036.1_g000015 Rmu_sc0001096.1_g000020 Rmu_sc0001145.1_g000023 Rmu_sc0001167.1_g000057 Rmu_sc0001173.1_g000030 Rmu_sc0001260.1_g000006 Rmu_sc0001266.1_g000016 Rmu_sc0001346.1_g000003 Rmu_sc0001346.1_g000004 Rmu_sc0001386.1_g000005 Rmu_sc0001501.1_g000057 Rmu_sc0001565.1_g000058 Rmu_sc0001634.1_g000047 Rmu_sc0001699.1_g000018 Rmu_sc0001700.1_g000041 Rmu_sc0001700.1_g000055 Rmu_sc0001725.1_g000005 Rmu_sc0001823.1_g000005 Rmu_sc0001877.1_g000014 Rmu_sc0001942.1_g000059 Rmu_sc0001966.1_g000033 Rmu_sc0001998.1_g000009 Rmu_sc0002011.1_g000030 Rmu_sc0002147.1_g000007 Rmu_sc0002176.1_g000005 Rmu_sc0002235.1_g000097 Rmu_sc0002324.1_g000002 Rmu_sc0002352.1_g000011 Rmu_sc0002365.1_g000022 Rmu_sc0002548.1_g000007 Rmu_sc0002890.1_g000008 Rmu_sc0002936.1_g000003 Rmu_sc0002955.1_g000016 Rmu_sc0003160.1_g000032 Rmu_sc0003452.1_g000010 Rmu_sc0003490.1_g000023 Rmu_sc0003541.1_g000014 Rmu_sc0003555.1_g000014 Rmu_sc0003759.1_g000008 Rmu_sc0003843.1_g000001 Rmu_sc0003846.1_g000005 Rmu_sc0003890.1_g000019 Rmu_sc0003953.1_g000016 Rmu_sc0003967.1_g000001 Rmu_sc0004068.1_g000002 Rmu_sc0004101.1_g000004 Rmu_sc0004298.1_g000010 Rmu_sc0004507.1_g000008 Rmu_sc0004649.1_g000015 Rmu_sc0004719.1_g000006 Rmu_sc0004751.1_g000012 Rmu_sc0004821.1_g000005 Rmu_sc0004868.1_g000003 Rmu_sc0004876.1_g000023 Rmu_sc0004932.1_g000020 Rmu_sc0005093.1_g000020 Rmu_sc0005132.1_g000019 Rmu_sc0005274.1_g000001 Rmu_sc0005381.1_g000013 Rmu_sc0005693.1_g000009 Rmu_sc0005708.1_g000011 Rmu_sc0005834.1_g000016 Rmu_sc0005966.1_g000017 Rmu_sc0006173.1_g000033 Rmu_sc0006175.1_g000012 Rmu_sc0006590.1_g000004 Rmu_sc0006695.1_g000044 Rmu_sc0007061.1_g000002 Rmu_sc0007069.1_g000023 Rmu_sc0007216.1_g000006 Rmu_sc0008124.1_g000026 Rmu_sc0008148.1_g000028 Rmu_sc0008198.1_g000004 Rmu_sc0008423.1_g000003 Rmu_sc0008441.1_g000011 Rmu_sc0008707.1_g000005 Rmu_sc0009101.1_g000008 Rmu_sc0009240.1_g000039 Rmu_sc0009414.1_g000002 Rmu_sc0009628.1_g000001 Rmu_sc0010048.1_g000007 Rmu_sc0010275.1_g000001 Rmu_sc0010338.1_g000004 Rmu_sc0010659.1_g000005 Rmu_sc0010691.1_g000001 Rmu_sc0011023.1_g000006 Rmu_sc0011533.1_g000001 Rmu_sc0011901.1_g000001 Rmu_sc0012746.1_g000042 Rmu_sc0012773.1_g000005 Rmu_sc0012952.1_g000005 Rmu_sc0014568.1_g000002 Rmu_sc0014568.1_g000003 Rmu_sc0015188.1_g000004 Rmu_sc0019714.1_g000001 Rmu_sc0020148.1_g000003 Rmu_sc0020260.1_g000003 Rmu_sc0021213.1_g000002 Rmu_sc0022616.1_g000001 Rmu_ssc0000084.1_g000006 Rmu_ssc0000116.1_g000017 Rmu_ssc0000116.1_g000018 Rmu_ssc0000189.1_g000037 Rmu_ssc0000330.1_g000009 Rmu_ssc0000359.1_g000004 Rmu_ssc0000366.1_g000031 Rmu_ssc0000386.1_g000056 Rmu_ssc0000387.1_g000006 Rmu_ssc0000400.1_g000065 Rmu_ssc0000440.1_g000006 Rmu_ssc0000452.1_g000014
rosa_roxburghii Rroxscaffold_1G00020180 Rroxscaffold_2G00089580 Rroxscaffold_2G00143500 Rroxscaffold_3G00264360 Rroxscaffold_4G00316450 Rroxscaffold_4G00327050 Rroxscaffold_5G00350260 Rroxscaffold_5G00351750 Rroxscaffold_5G00364680 Rroxscaffold_5G00376220 Rroxscaffold_6G00391720
rosa_rugosa Rorug04G0096700 Rorug05G0284300 Rorug06G0059800 Rorug06G0059900 Rorug06G0060000 Rorug06G0060100 Rorug06G0060200 Rorug06G0127700 Rorug06G0243400
rosa_samantha Rh1AG033000 Rh1AG274600 Rh1DG069700 Rh2DG069900 Rh2DG210700 Rh2DG560100 Rh3AG245500 Rh3BG095400 Rh4AG018100 Rh4AG084900 Rh4AG177900 Rh4CG092300 Rh4CG194700 Rh5BG350600 Rh6BG362400 Rh7DG198200 Rh7DG403500
rosa_wichuraiana Rw1G008260 Rw1G035940 Rw2G027180 Rw4G003470 Rw4G010610 Rw5G037240 Rw6G036490 Rw7G015690 Rw7G028950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 404
AccII CGCG 4 cut(s) 10, 40, 45, 102
AciI CCGC 6 cut(s) 10, 43, 45, 81, 402, 558
AclWI GGATC 1 cut(s) 155
AfaI GTAC 1 cut(s) 175
AfiI CCNNNNNNNGG 3 cut(s) 49, 163, 170
AgsI TTSAA 3 cut(s) 128, 317, 326
AjnI CCWGG 1 cut(s) 365
AluBI AGCT 3 cut(s) 208, 236, 509
AluI AGCT 3 cut(s) 208, 236, 509
Alw26I GTCTC 2 cut(s) 29, 560
AlwI GGATC 1 cut(s) 155
AlwNI CAGNNNCTG 1 cut(s) 560
Ama87I CYCGRG 1 cut(s) 29
AoxI GGCC 2 cut(s) 11, 479
ApeKI GCWGC 3 cut(s) 107, 236, 497
AseI ATTAAT 1 cut(s) 282
Asp700I GAANNNNTTC 3 cut(s) 123, 330, 510
AspLEI GCGC 4 cut(s) 10, 42, 63, 102
AspS9I GGNCC 1 cut(s) 12
AsuC2I CCSGG 1 cut(s) 165
AsuHPI GGTGA 2 cut(s) 284, 487
AvaI CYCGRG 1 cut(s) 29
BbsI GAAGAC 2 cut(s) 126, 333
BbvI GCAGC 3 cut(s) 119, 223, 484
BciT130I CCWGG 1 cut(s) 367
BcnI CCSGG 1 cut(s) 165
BcoDI GTCTC 2 cut(s) 29, 560
BfaI CTAG 1 cut(s) 78
BfmI CTRYAG 2 cut(s) 94, 570
BglI GCCNNNNNGGC 1 cut(s) 10
BisI GCNGC 6 cut(s) 11, 43, 108, 237, 498, 558
BlsI GCNGC 6 cut(s) 12, 44, 109, 238, 499, 559
Bme1390I CCNGG 2 cut(s) 165, 367
BmeT110I CYCGRG 1 cut(s) 29
BmgT120I GGNCC 1 cut(s) 12
BmiI GGNNCC 1 cut(s) 361
BmrFI CCNGG 2 cut(s) 165, 367
BmsI GCATC 4 cut(s) 375, 424, 445, 539
BpiI GAAGAC 2 cut(s) 126, 333
BpmI CTGGAG 2 cut(s) 349, 375
BpuEI CTTGAG 1 cut(s) 468
BpuMI CCSGG 1 cut(s) 165
BsaJI CCNNGG 3 cut(s) 43, 366, 603
Bsc4I CCNNNNNNNGG 3 cut(s) 49, 163, 170
Bse1I ACTGG 2 cut(s) 421, 543
BseBI CCWGG 1 cut(s) 367
BseDI CCNNGG 3 cut(s) 43, 366, 603
BseGI GGATG 1 cut(s) 390
BseLI CCNNNNNNNGG 3 cut(s) 49, 163, 170
BseNI ACTGG 2 cut(s) 421, 543
BseXI GCAGC 3 cut(s) 119, 223, 484
Bsh1236I CGCG 4 cut(s) 10, 40, 45, 102
BshFI GGCC 2 cut(s) 13, 481
BsiHKCI CYCGRG 1 cut(s) 29
BsiSI CCGG 1 cut(s) 164
BslFI GGGAC 1 cut(s) 98
BslI CCNNNNNNNGG 3 cut(s) 49, 163, 170
BsmAI GTCTC 2 cut(s) 29, 560
BsmBI CGTCTC 1 cut(s) 29
BsmFI GGGAC 1 cut(s) 98
BsnI GGCC 2 cut(s) 13, 481
BsoBI CYCGRG 1 cut(s) 29
Bsp143I GATC 2 cut(s) 160, 193
BspACI CCGC 6 cut(s) 10, 43, 45, 81, 402, 558
BspANI GGCC 2 cut(s) 13, 481
BspFNI CGCG 4 cut(s) 10, 40, 45, 102
BspLI GGNNCC 1 cut(s) 361
BspMAI CTGCAG 1 cut(s) 98
BspPI GGATC 1 cut(s) 155
BspQI GCTCTTC 1 cut(s) 516
BsrBI CCGCTC 1 cut(s) 404
BsrI ACTGG 2 cut(s) 421, 543
BssECI CCNNGG 3 cut(s) 43, 366, 603
BssMI GATC 2 cut(s) 160, 193
BssT1I CCWWGG 1 cut(s) 603
Bst2UI CCWGG 1 cut(s) 367
Bst6I CTCTTC 2 cut(s) 352, 516
BstC8I GCNNGC 2 cut(s) 6, 98
BstDSI CCRYGG 1 cut(s) 43
BstF5I GGATG 1 cut(s) 390
BstFNI CGCG 4 cut(s) 10, 40, 45, 102
BstHHI GCGC 4 cut(s) 10, 42, 63, 102
BstKTI GATC 2 cut(s) 163, 196
BstMAI GTCTC 2 cut(s) 29, 560
BstMBI GATC 2 cut(s) 160, 193
BstMWI GCNNNNNNNGC 2 cut(s) 10, 506
BstNI CCWGG 1 cut(s) 367
BstSCI CCNGG 2 cut(s) 163, 365
BstSFI CTRYAG 2 cut(s) 94, 570
BstUI CGCG 4 cut(s) 10, 40, 45, 102
BstV1I GCAGC 3 cut(s) 119, 223, 484
BstV2I GAAGAC 2 cut(s) 126, 333
BstX2I RGATCY 1 cut(s) 160
BstYI RGATCY 1 cut(s) 160
BsuRI GGCC 2 cut(s) 13, 481
BtgI CCRYGG 1 cut(s) 43
BtgZI GCGATG 1 cut(s) 254
BtsCI GGATG 1 cut(s) 390
Cac8I GCNNGC 2 cut(s) 6, 98
CaiI CAGNNNCTG 1 cut(s) 560
CfoI GCGC 4 cut(s) 10, 42, 63, 102
Cfr13I GGNCC 1 cut(s) 12
Cfr42I CCGCGG 1 cut(s) 46
CseI GACGC 2 cut(s) 34, 46
Csp6I GTAC 1 cut(s) 174
CspCI CAANNNNNGTGG 2 cut(s) 209, 244
CviAII CATG 1 cut(s) 416
CviQI GTAC 1 cut(s) 174
DpnI GATC 2 cut(s) 162, 195
DpnII GATC 2 cut(s) 160, 193
Eam1104I CTCTTC 2 cut(s) 352, 516
EarI CTCTTC 2 cut(s) 352, 516
Eco130I CCWWGG 1 cut(s) 603
Eco147I AGGCCT 1 cut(s) 481
Eco88I CYCGRG 1 cut(s) 29
EcoRII CCWGG 1 cut(s) 365
EcoT14I CCWWGG 1 cut(s) 603
ErhI CCWWGG 1 cut(s) 603
Esp3I CGTCTC 1 cut(s) 29
FaeI CATG 1 cut(s) 419
FaiI YATR 7 cut(s) 199, 417, 431, 572, 627, 663, 665
FalI AAGNNNNNCTT 2 cut(s) 495, 527
FaqI GGGAC 1 cut(s) 98
FatI CATG 1 cut(s) 415
FauI CCCGC 2 cut(s) 38, 74
Fnu4HI GCNGC 6 cut(s) 11, 43, 108, 237, 498, 558
FokI GGATG 1 cut(s) 397
Fsp4HI GCNGC 6 cut(s) 11, 43, 108, 237, 498, 558
FspBI CTAG 1 cut(s) 78
GlaI GCGC 4 cut(s) 9, 41, 62, 101
GluI GCNGC 6 cut(s) 11, 43, 108, 237, 498, 558
GsuI CTGGAG 2 cut(s) 349, 375
HaeIII GGCC 2 cut(s) 13, 481
HapII CCGG 1 cut(s) 164
HgaI GACGC 2 cut(s) 34, 46
HhaI GCGC 4 cut(s) 10, 42, 63, 102
Hin1II CATG 1 cut(s) 419
Hin6I GCGC 4 cut(s) 8, 40, 61, 100
HinP1I GCGC 4 cut(s) 8, 40, 61, 100
HinfI GANTC 2 cut(s) 410, 539
HpaII CCGG 1 cut(s) 164
HphI GGTGA 2 cut(s) 284, 487
Hpy166II GTNNAC 1 cut(s) 448
Hpy188I TCNGA 2 cut(s) 516, 552
Hpy188III TCNNGA 1 cut(s) 407
Hpy8I GTNNAC 1 cut(s) 448
HpyAV CCTTC 2 cut(s) 480, 487
HpyCH4IV ACGT 3 cut(s) 90, 211, 613
HpyCH4V TGCA 5 cut(s) 96, 135, 388, 437, 458
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 506
HpySE526I ACGT 3 cut(s) 90, 211, 613
Hsp92II CATG 1 cut(s) 419
HspAI GCGC 4 cut(s) 8, 40, 61, 100
KspI CCGCGG 1 cut(s) 46
Kzo9I GATC 2 cut(s) 160, 193
LguI GCTCTTC 1 cut(s) 516
LmnI GCTCC 1 cut(s) 409
LpnPI CCDG 9 cut(s) 18, 82, 177, 339, 352, 379, 420, 434, 556
Lsp1109I GCAGC 3 cut(s) 119, 223, 484
LweI GCATC 4 cut(s) 375, 424, 445, 539
MaeI CTAG 1 cut(s) 78
MaeII ACGT 3 cut(s) 90, 211, 613
MaeIII GTNAC 2 cut(s) 293, 641
MalI GATC 2 cut(s) 162, 195
MbiI CCGCTC 1 cut(s) 404
MboI GATC 2 cut(s) 160, 193
MboII GAAGA 5 cut(s) 131, 195, 338, 339, 503
MfeI CAATTG 1 cut(s) 128
MflI RGATCY 1 cut(s) 160
MluCI AATT 3 cut(s) 128, 283, 320
MmeI TCCRAC 1 cut(s) 405
MroXI GAANNNNTTC 3 cut(s) 123, 330, 510
MseI TTAA 2 cut(s) 282, 306
MslI CAYNNNNRTG 1 cut(s) 639
MspA1I CMGCKG 2 cut(s) 45, 560
MspI CCGG 1 cut(s) 164
MspR9I CCNGG 2 cut(s) 165, 367
MunI CAATTG 1 cut(s) 128
MvaI CCWGG 1 cut(s) 367
MvnI CGCG 4 cut(s) 10, 40, 45, 102
MwoI GCNNNNNNNGC 2 cut(s) 10, 506
NciI CCSGG 1 cut(s) 165
NdeII GATC 2 cut(s) 160, 193
NlaIII CATG 1 cut(s) 419
NlaIV GGNNCC 1 cut(s) 361
NmuCI GTSAC 1 cut(s) 641
PceI AGGCCT 1 cut(s) 481
PciSI GCTCTTC 1 cut(s) 516
PcsI WCGNNNNNNNCGW 1 cut(s) 637
PdmI GAANNNNTTC 3 cut(s) 123, 330, 510
PfeI GAWTC 2 cut(s) 410, 539
PflFI GACNNNGTC 1 cut(s) 89
PfoI TCCNGGA 1 cut(s) 163
PkrI GCNGC 6 cut(s) 12, 44, 109, 238, 499, 559
PshBI ATTAAT 1 cut(s) 282
Psp6I CCWGG 1 cut(s) 365
PspGI CCWGG 1 cut(s) 365
PspN4I GGNNCC 1 cut(s) 361
PspPI GGNCC 1 cut(s) 12
PstI CTGCAG 1 cut(s) 98
PstNI CAGNNNCTG 1 cut(s) 560
PsuI RGATCY 1 cut(s) 160
PsyI GACNNNGTC 1 cut(s) 89
RsaI GTAC 1 cut(s) 175
RsaNI GTAC 1 cut(s) 174
RseI CAYNNNNRTG 1 cut(s) 639
SacII CCGCGG 1 cut(s) 46
SapI GCTCTTC 1 cut(s) 516
SaqAI TTAA 2 cut(s) 282, 306
SatI GCNGC 6 cut(s) 11, 43, 108, 237, 498, 558
Sau3AI GATC 2 cut(s) 160, 193
Sau96I GGNCC 1 cut(s) 12
ScrFI CCNGG 2 cut(s) 165, 367
SetI ASST 9 cut(s) 93, 210, 214, 238, 274, 365, 447, 511, 616
SfaNI GCATC 4 cut(s) 375, 424, 445, 539
SfcI CTRYAG 2 cut(s) 94, 570
Sfr303I CCGCGG 1 cut(s) 46
SgrBI CCGCGG 1 cut(s) 46
SmiMI CAYNNNNRTG 1 cut(s) 639
SmlI CTYRAG 1 cut(s) 483
SmoI CTYRAG 1 cut(s) 483
Sse9I AATT 3 cut(s) 128, 283, 320
SseBI AGGCCT 1 cut(s) 481
SsiI CCGC 6 cut(s) 10, 43, 45, 81, 402, 558
SspMI CTAG 1 cut(s) 78
StuI AGGCCT 1 cut(s) 481
StyD4I CCNGG 2 cut(s) 163, 365
StyI CCWWGG 1 cut(s) 603
TaiI ACGT 3 cut(s) 93, 214, 616
TaqI TCGA 1 cut(s) 631
TasI AATT 3 cut(s) 128, 283, 320
TauI GCSGC 3 cut(s) 13, 45, 560
TfiI GAWTC 2 cut(s) 410, 539
Tru1I TTAA 2 cut(s) 282, 306
Tru9I TTAA 2 cut(s) 282, 306
TseFI GTSAC 1 cut(s) 641
TseI GCWGC 3 cut(s) 107, 236, 497
Tsp45I GTSAC 1 cut(s) 641
TspDTI ATGAA 2 cut(s) 132, 268
TspGWI ACGGA 3 cut(s) 191, 397, 629
Tth111I GACNNNGTC 1 cut(s) 89
VspI ATTAAT 1 cut(s) 282
XmnI GAANNNNTTC 3 cut(s) 123, 330, 510
XspI CTAG 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.