Rmu_sc0022616.1_g000001

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0022616.1
OG0000127
Physical Location & Seq
Forward (+)
246 .. 554
309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0022616.1_g000001.1.cds

Sequence Viewer

Length: 309 bp
atggctgaagaaatgggaaacacaggtccaatggagggatatcaaactgaagatgataatatccaagacaaaaggagatggacggatgaggaagatgttcaattgtgcaagtcttggaaaattgttgggcaagatccggctgtgggcacaaatcagaaaaacaacgacttatggatgcgtgtgaggcgacactttgtcgcaaattggccccagagtcgatcagcttcctctttgcaaggaaggtggaaaattttgaaggttgaactctttgagtggcattgtgcattagcaagcgaaaaattggtataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

102

Amino Acids

11.95

Weight (kDa)

5.66

Isoelectric Point (pI)

68.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000127)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02381 FvH4_1g19463 FvH4_1g28433 FvH4_2g16143 FvH4_2g18491 FvH4_2g27711 FvH4_3g19631 FvH4_3g23573 FvH4_4g35743 FvH4_5g23701 FvH4_6g19603 FvH4_6g39781 FvH4_6g40561 FvH4_7g02563 FvH4_7g11472 FvH4_7g17530
rosa_chinensis RchiOBHm_Chr1g0315991 RchiOBHm_Chr1g0318371 RchiOBHm_Chr1g0328341 RchiOBHm_Chr1g0331431 RchiOBHm_Chr1g0344801 RchiOBHm_Chr1g0371461 RchiOBHm_Chr1g0379261 RchiOBHm_Chr2g0117661 RchiOBHm_Chr5g0011791 RchiOBHm_Chr5g0020991 RchiOBHm_Chr5g0060631 RchiOBHm_Chr5g0064181 RchiOBHm_Chr5g0080181 RchiOBHm_Chr6g0254691 RchiOBHm_Chr6g0260101 RchiOBHm_Chr6g0290901 RchiOBHm_Chr7g0201691
rosa_laevigata RLG00000003529 RLG00000009370 RLG00000013568
rosa_multiflora Rmu_co8437743.1_g000001 Rmu_sc0000063.1_g000028 Rmu_sc0000098.1_g000004 Rmu_sc0000166.1_g000028 Rmu_sc0000258.1_g000102 Rmu_sc0000288.1_g000018 Rmu_sc0000333.1_g000043 Rmu_sc0000451.1_g000011 Rmu_sc0000455.1_g000003 Rmu_sc0000479.1_g000002 Rmu_sc0000687.1_g000014 Rmu_sc0000733.1_g000024 Rmu_sc0000736.1_g000001 Rmu_sc0000745.1_g000017 Rmu_sc0000760.1_g000031 Rmu_sc0000776.1_g000044 Rmu_sc0000828.1_g000011 Rmu_sc0000830.1_g000027 Rmu_sc0000857.1_g000025 Rmu_sc0000864.1_g000013 Rmu_sc0001016.1_g000034 Rmu_sc0001016.1_g000035 Rmu_sc0001036.1_g000015 Rmu_sc0001096.1_g000020 Rmu_sc0001145.1_g000023 Rmu_sc0001167.1_g000057 Rmu_sc0001173.1_g000030 Rmu_sc0001260.1_g000006 Rmu_sc0001266.1_g000016 Rmu_sc0001346.1_g000003 Rmu_sc0001346.1_g000004 Rmu_sc0001386.1_g000005 Rmu_sc0001501.1_g000057 Rmu_sc0001565.1_g000058 Rmu_sc0001634.1_g000047 Rmu_sc0001699.1_g000018 Rmu_sc0001700.1_g000041 Rmu_sc0001700.1_g000055 Rmu_sc0001725.1_g000005 Rmu_sc0001823.1_g000005 Rmu_sc0001877.1_g000014 Rmu_sc0001942.1_g000059 Rmu_sc0001966.1_g000033 Rmu_sc0001998.1_g000009 Rmu_sc0002011.1_g000030 Rmu_sc0002147.1_g000007 Rmu_sc0002176.1_g000005 Rmu_sc0002235.1_g000097 Rmu_sc0002324.1_g000002 Rmu_sc0002352.1_g000011 Rmu_sc0002365.1_g000022 Rmu_sc0002548.1_g000007 Rmu_sc0002890.1_g000008 Rmu_sc0002936.1_g000003 Rmu_sc0002955.1_g000016 Rmu_sc0003160.1_g000032 Rmu_sc0003452.1_g000010 Rmu_sc0003490.1_g000023 Rmu_sc0003541.1_g000014 Rmu_sc0003555.1_g000014 Rmu_sc0003759.1_g000008 Rmu_sc0003843.1_g000001 Rmu_sc0003846.1_g000005 Rmu_sc0003890.1_g000019 Rmu_sc0003953.1_g000016 Rmu_sc0003967.1_g000001 Rmu_sc0004068.1_g000002 Rmu_sc0004101.1_g000004 Rmu_sc0004298.1_g000010 Rmu_sc0004507.1_g000008 Rmu_sc0004649.1_g000015 Rmu_sc0004719.1_g000006 Rmu_sc0004751.1_g000012 Rmu_sc0004821.1_g000005 Rmu_sc0004868.1_g000003 Rmu_sc0004876.1_g000023 Rmu_sc0004932.1_g000020 Rmu_sc0005093.1_g000020 Rmu_sc0005132.1_g000019 Rmu_sc0005274.1_g000001 Rmu_sc0005381.1_g000013 Rmu_sc0005693.1_g000009 Rmu_sc0005708.1_g000011 Rmu_sc0005834.1_g000016 Rmu_sc0005966.1_g000017 Rmu_sc0006173.1_g000033 Rmu_sc0006175.1_g000012 Rmu_sc0006590.1_g000004 Rmu_sc0006695.1_g000044 Rmu_sc0007061.1_g000002 Rmu_sc0007069.1_g000023 Rmu_sc0007216.1_g000006 Rmu_sc0008124.1_g000026 Rmu_sc0008148.1_g000028 Rmu_sc0008198.1_g000004 Rmu_sc0008423.1_g000003 Rmu_sc0008441.1_g000011 Rmu_sc0008707.1_g000005 Rmu_sc0009101.1_g000008 Rmu_sc0009240.1_g000039 Rmu_sc0009414.1_g000002 Rmu_sc0009628.1_g000001 Rmu_sc0010048.1_g000007 Rmu_sc0010275.1_g000001 Rmu_sc0010338.1_g000004 Rmu_sc0010659.1_g000005 Rmu_sc0010691.1_g000001 Rmu_sc0011023.1_g000006 Rmu_sc0011533.1_g000001 Rmu_sc0011901.1_g000001 Rmu_sc0012746.1_g000042 Rmu_sc0012773.1_g000005 Rmu_sc0012952.1_g000005 Rmu_sc0014568.1_g000002 Rmu_sc0014568.1_g000003 Rmu_sc0015188.1_g000004 Rmu_sc0019714.1_g000001 Rmu_sc0020148.1_g000003 Rmu_sc0020260.1_g000003 Rmu_sc0021213.1_g000002 Rmu_sc0022616.1_g000001 Rmu_ssc0000084.1_g000006 Rmu_ssc0000116.1_g000017 Rmu_ssc0000116.1_g000018 Rmu_ssc0000189.1_g000037 Rmu_ssc0000330.1_g000009 Rmu_ssc0000359.1_g000004 Rmu_ssc0000366.1_g000031 Rmu_ssc0000386.1_g000056 Rmu_ssc0000387.1_g000006 Rmu_ssc0000400.1_g000065 Rmu_ssc0000440.1_g000006 Rmu_ssc0000452.1_g000014
rosa_roxburghii Rroxscaffold_1G00020180 Rroxscaffold_2G00089580 Rroxscaffold_2G00143500 Rroxscaffold_3G00264360 Rroxscaffold_4G00316450 Rroxscaffold_4G00327050 Rroxscaffold_5G00350260 Rroxscaffold_5G00351750 Rroxscaffold_5G00364680 Rroxscaffold_5G00376220 Rroxscaffold_6G00391720
rosa_rugosa Rorug04G0096700 Rorug05G0284300 Rorug06G0059800 Rorug06G0059900 Rorug06G0060000 Rorug06G0060100 Rorug06G0060200 Rorug06G0127700 Rorug06G0243400
rosa_samantha Rh1AG033000 Rh1AG274600 Rh1DG069700 Rh2DG069900 Rh2DG210700 Rh2DG560100 Rh3AG245500 Rh3BG095400 Rh4AG018100 Rh4AG084900 Rh4AG177900 Rh4CG092300 Rh4CG194700 Rh5BG350600 Rh6BG362400 Rh7DG198200 Rh7DG403500
rosa_wichuraiana Rw1G008260 Rw1G035940 Rw2G027180 Rw4G003470 Rw4G010610 Rw5G037240 Rw6G036490 Rw7G015690 Rw7G028950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 128
AcsI RAATTY 1 cut(s) 249
AcuI CTGAAG 2 cut(s) 27, 69
AfiI CCNNNNNNNGG 2 cut(s) 35, 143
AgsI TTSAA 3 cut(s) 101, 256, 263
AhdI GACNNNNNGTC 1 cut(s) 194
AluBI AGCT 1 cut(s) 224
AluI AGCT 1 cut(s) 224
AlwI GGATC 1 cut(s) 128
AoxI GGCC 1 cut(s) 206
ApoI RAATTY 1 cut(s) 249
Asp700I GAANNNNTTC 1 cut(s) 96
AspS9I GGNCC 2 cut(s) 26, 207
AvaII GGWCC 1 cut(s) 26
BaeGI GKGCMC 1 cut(s) 149
BccI CCATC 1 cut(s) 72
Bme18I GGWCC 1 cut(s) 26
BmeRI GACNNNNNGTC 1 cut(s) 194
BmgT120I GGNCC 2 cut(s) 26, 207
BmiI GGNNCC 1 cut(s) 209
BmsI GCATC 1 cut(s) 165
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 143
BseGI GGATG 2 cut(s) 91, 180
BseLI CCNNNNNNNGG 2 cut(s) 35, 143
BseSI GKGCMC 1 cut(s) 149
BshFI GGCC 1 cut(s) 208
BsiSI CCGG 1 cut(s) 137
BslI CCNNNNNNNGG 2 cut(s) 35, 143
BsnI GGCC 1 cut(s) 208
Bsp1286I GDGCHC 1 cut(s) 149
Bsp143I GATC 2 cut(s) 133, 218
BspANI GGCC 1 cut(s) 208
BspLI GGNNCC 1 cut(s) 209
BspPI GGATC 1 cut(s) 128
BssMI GATC 2 cut(s) 133, 218
BstC8I GCNNGC 1 cut(s) 292
BstF5I GGATG 2 cut(s) 91, 180
BstKTI GATC 2 cut(s) 136, 221
BstMBI GATC 2 cut(s) 133, 218
BstMWI GCNNNNNNNGC 1 cut(s) 184
BstSLI GKGCMC 1 cut(s) 149
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
BsuRI GGCC 1 cut(s) 208
BtsCI GGATG 2 cut(s) 91, 180
Cac8I GCNNGC 1 cut(s) 292
Cfr13I GGNCC 2 cut(s) 26, 207
CspCI CAANNNNNGTGG 2 cut(s) 224, 259
CviJI RGCY 4 cut(s) 5, 140, 208, 224
CviKI_1 RGCY 4 cut(s) 5, 140, 208, 224
DpnI GATC 2 cut(s) 135, 220
DpnII GATC 2 cut(s) 133, 218
DriI GACNNNNNGTC 1 cut(s) 194
Eam1105I GACNNNNNGTC 1 cut(s) 194
Eco32I GATATC 1 cut(s) 41
Eco47I GGWCC 1 cut(s) 26
Eco57I CTGAAG 2 cut(s) 27, 69
EcoRV GATATC 1 cut(s) 41
FaiI YATR 2 cut(s) 172, 307
FokI GGATG 2 cut(s) 98, 187
HaeIII GGCC 1 cut(s) 208
HapII CCGG 1 cut(s) 137
HinfI GANTC 1 cut(s) 214
HpaII CCGG 1 cut(s) 137
Hpy188I TCNGA 1 cut(s) 156
HpyAV CCTTC 2 cut(s) 234, 250
HpyCH4V TGCA 3 cut(s) 108, 235, 284
HpyF10VI GCNNNNNNNGC 1 cut(s) 184
Kzo9I GATC 2 cut(s) 133, 218
LpnPI CCDG 3 cut(s) 9, 150, 224
LweI GCATC 1 cut(s) 165
MalI GATC 2 cut(s) 135, 220
MboI GATC 2 cut(s) 133, 218
MboII GAAGA 3 cut(s) 20, 62, 104
MfeI CAATTG 1 cut(s) 101
MflI RGATCY 1 cut(s) 133
MhlI GDGCHC 1 cut(s) 149
MluCI AATT 5 cut(s) 101, 120, 202, 249, 299
MlyI GAGTC 1 cut(s) 223
MnlI CCTC 4 cut(s) 28, 82, 177, 238
MroXI GAANNNNTTC 1 cut(s) 96
MspI CCGG 1 cut(s) 137
MunI CAATTG 1 cut(s) 101
MwoI GCNNNNNNNGC 1 cut(s) 184
NdeII GATC 2 cut(s) 133, 218
NlaIV GGNNCC 1 cut(s) 209
PdmI GAANNNNTTC 1 cut(s) 96
PleI GAGTC 1 cut(s) 222
PpsI GAGTC 1 cut(s) 222
PspN4I GGNNCC 1 cut(s) 209
PspPI GGNCC 2 cut(s) 26, 207
PsuI RGATCY 1 cut(s) 133
Sau3AI GATC 2 cut(s) 133, 218
Sau96I GGNCC 2 cut(s) 26, 207
SchI GAGTC 1 cut(s) 223
SduI GDGCHC 1 cut(s) 149
SetI ASST 4 cut(s) 28, 226, 245, 261
SfaNI GCATC 1 cut(s) 165
SinI GGWCC 1 cut(s) 26
Sse9I AATT 5 cut(s) 101, 120, 202, 249, 299
TaqI TCGA 1 cut(s) 217
TasI AATT 5 cut(s) 101, 120, 202, 249, 299
TspGWI ACGGA 1 cut(s) 98
VpaK11BI GGWCC 1 cut(s) 26
XapI RAATTY 1 cut(s) 249
XmnI GAANNNNTTC 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.