Rmu_sc0007216.1_g000006

Peptidyl-prolyl cis-trans isomerase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007216.1
Physical Location & Seq
Reverse (-)
23630 .. 24875
1246 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007216.1_g000006.1.cds

Sequence Viewer

Length: 867 bp
atggctgaagaaaggggaaacacaggtccagtggccggacaagagggagatcaaaatgaagatgataatattcaagacaaaaggagatggacggatgaggaagatgttcaattgtgcaagtcttggaaaattgttgggcaagatccggctgtgggcacaaatcagaaaaataacgacttatggatgcatgtgaggcgacactttgtcgcaaattggccccagagccgatcagcttcctctttgcaaggaaggtggaaaattttgaaggttgaactctatgagtggcattgtgcattaaggcaagcgaaaaattggtacaagagcggttcaaatgcggttgatgagcgagatgaagcacataaattgtggcatgccgggatgaagagaaaaaagaagccaaaaaaacacaattttcagagttttgctagttacgctgttgtggagggctttgcacaatttaaagacattcctagtcatacatctggaggaacatcaaatgaaggaaatcaacatacgcctacacaaccaattcctggaaattctcccatcaacttggacatggatgtagatgaggtaattgcaggtgaaactgcaaatccaaatgtgaggcctcaaggaaggaaggctgccaaagaagcaatacggaaaggaaagaaggcagcgaaagatcaaagtcctttgtcaagcactctcgagagtatagcgaacaaccaaatagaggcaaccgcgggcaagaaaaaacttgatgacgaatttgctcgaagtctccaagaggaagagaaaagagcatatatcctcttacgaatcgaaatgggaaaagagcaactcctatttcaagaaaggcaagatcgaattaaacataaatga

Protein Analysis

288

Amino Acids

32.78

Weight (kDa)

9.0

Isoelectric Point (pI)

56.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000127)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02381 FvH4_1g19463 FvH4_1g28433 FvH4_2g16143 FvH4_2g18491 FvH4_2g27711 FvH4_3g19631 FvH4_3g23573 FvH4_4g35743 FvH4_5g23701 FvH4_6g19603 FvH4_6g39781 FvH4_6g40561 FvH4_7g02563 FvH4_7g11472 FvH4_7g17530
rosa_chinensis RchiOBHm_Chr1g0315991 RchiOBHm_Chr1g0318371 RchiOBHm_Chr1g0328341 RchiOBHm_Chr1g0331431 RchiOBHm_Chr1g0344801 RchiOBHm_Chr1g0371461 RchiOBHm_Chr1g0379261 RchiOBHm_Chr2g0117661 RchiOBHm_Chr5g0011791 RchiOBHm_Chr5g0020991 RchiOBHm_Chr5g0060631 RchiOBHm_Chr5g0064181 RchiOBHm_Chr5g0080181 RchiOBHm_Chr6g0254691 RchiOBHm_Chr6g0260101 RchiOBHm_Chr6g0290901 RchiOBHm_Chr7g0201691
rosa_laevigata RLG00000003529 RLG00000009370 RLG00000013568
rosa_multiflora Rmu_co8437743.1_g000001 Rmu_sc0000063.1_g000028 Rmu_sc0000098.1_g000004 Rmu_sc0000166.1_g000028 Rmu_sc0000258.1_g000102 Rmu_sc0000288.1_g000018 Rmu_sc0000333.1_g000043 Rmu_sc0000451.1_g000011 Rmu_sc0000455.1_g000003 Rmu_sc0000479.1_g000002 Rmu_sc0000687.1_g000014 Rmu_sc0000733.1_g000024 Rmu_sc0000736.1_g000001 Rmu_sc0000745.1_g000017 Rmu_sc0000760.1_g000031 Rmu_sc0000776.1_g000044 Rmu_sc0000828.1_g000011 Rmu_sc0000830.1_g000027 Rmu_sc0000857.1_g000025 Rmu_sc0000864.1_g000013 Rmu_sc0001016.1_g000034 Rmu_sc0001016.1_g000035 Rmu_sc0001036.1_g000015 Rmu_sc0001096.1_g000020 Rmu_sc0001145.1_g000023 Rmu_sc0001167.1_g000057 Rmu_sc0001173.1_g000030 Rmu_sc0001260.1_g000006 Rmu_sc0001266.1_g000016 Rmu_sc0001346.1_g000003 Rmu_sc0001346.1_g000004 Rmu_sc0001386.1_g000005 Rmu_sc0001501.1_g000057 Rmu_sc0001565.1_g000058 Rmu_sc0001634.1_g000047 Rmu_sc0001699.1_g000018 Rmu_sc0001700.1_g000041 Rmu_sc0001700.1_g000055 Rmu_sc0001725.1_g000005 Rmu_sc0001823.1_g000005 Rmu_sc0001877.1_g000014 Rmu_sc0001942.1_g000059 Rmu_sc0001966.1_g000033 Rmu_sc0001998.1_g000009 Rmu_sc0002011.1_g000030 Rmu_sc0002147.1_g000007 Rmu_sc0002176.1_g000005 Rmu_sc0002235.1_g000097 Rmu_sc0002324.1_g000002 Rmu_sc0002352.1_g000011 Rmu_sc0002365.1_g000022 Rmu_sc0002548.1_g000007 Rmu_sc0002890.1_g000008 Rmu_sc0002936.1_g000003 Rmu_sc0002955.1_g000016 Rmu_sc0003160.1_g000032 Rmu_sc0003452.1_g000010 Rmu_sc0003490.1_g000023 Rmu_sc0003541.1_g000014 Rmu_sc0003555.1_g000014 Rmu_sc0003759.1_g000008 Rmu_sc0003843.1_g000001 Rmu_sc0003846.1_g000005 Rmu_sc0003890.1_g000019 Rmu_sc0003953.1_g000016 Rmu_sc0003967.1_g000001 Rmu_sc0004068.1_g000002 Rmu_sc0004101.1_g000004 Rmu_sc0004298.1_g000010 Rmu_sc0004507.1_g000008 Rmu_sc0004649.1_g000015 Rmu_sc0004719.1_g000006 Rmu_sc0004751.1_g000012 Rmu_sc0004821.1_g000005 Rmu_sc0004868.1_g000003 Rmu_sc0004876.1_g000023 Rmu_sc0004932.1_g000020 Rmu_sc0005093.1_g000020 Rmu_sc0005132.1_g000019 Rmu_sc0005274.1_g000001 Rmu_sc0005381.1_g000013 Rmu_sc0005693.1_g000009 Rmu_sc0005708.1_g000011 Rmu_sc0005834.1_g000016 Rmu_sc0005966.1_g000017 Rmu_sc0006173.1_g000033 Rmu_sc0006175.1_g000012 Rmu_sc0006590.1_g000004 Rmu_sc0006695.1_g000044 Rmu_sc0007061.1_g000002 Rmu_sc0007069.1_g000023 Rmu_sc0007216.1_g000006 Rmu_sc0008124.1_g000026 Rmu_sc0008148.1_g000028 Rmu_sc0008198.1_g000004 Rmu_sc0008423.1_g000003 Rmu_sc0008441.1_g000011 Rmu_sc0008707.1_g000005 Rmu_sc0009101.1_g000008 Rmu_sc0009240.1_g000039 Rmu_sc0009414.1_g000002 Rmu_sc0009628.1_g000001 Rmu_sc0010048.1_g000007 Rmu_sc0010275.1_g000001 Rmu_sc0010338.1_g000004 Rmu_sc0010659.1_g000005 Rmu_sc0010691.1_g000001 Rmu_sc0011023.1_g000006 Rmu_sc0011533.1_g000001 Rmu_sc0011901.1_g000001 Rmu_sc0012746.1_g000042 Rmu_sc0012773.1_g000005 Rmu_sc0012952.1_g000005 Rmu_sc0014568.1_g000002 Rmu_sc0014568.1_g000003 Rmu_sc0015188.1_g000004 Rmu_sc0019714.1_g000001 Rmu_sc0020148.1_g000003 Rmu_sc0020260.1_g000003 Rmu_sc0021213.1_g000002 Rmu_sc0022616.1_g000001 Rmu_ssc0000084.1_g000006 Rmu_ssc0000116.1_g000017 Rmu_ssc0000116.1_g000018 Rmu_ssc0000189.1_g000037 Rmu_ssc0000330.1_g000009 Rmu_ssc0000359.1_g000004 Rmu_ssc0000366.1_g000031 Rmu_ssc0000386.1_g000056 Rmu_ssc0000387.1_g000006 Rmu_ssc0000400.1_g000065 Rmu_ssc0000440.1_g000006 Rmu_ssc0000452.1_g000014
rosa_roxburghii Rroxscaffold_1G00020180 Rroxscaffold_2G00089580 Rroxscaffold_2G00143500 Rroxscaffold_3G00264360 Rroxscaffold_4G00316450 Rroxscaffold_4G00327050 Rroxscaffold_5G00350260 Rroxscaffold_5G00351750 Rroxscaffold_5G00364680 Rroxscaffold_5G00376220 Rroxscaffold_6G00391720
rosa_rugosa Rorug04G0096700 Rorug05G0284300 Rorug06G0059800 Rorug06G0059900 Rorug06G0060000 Rorug06G0060100 Rorug06G0060200 Rorug06G0127700 Rorug06G0243400
rosa_samantha Rh1AG033000 Rh1AG274600 Rh1DG069700 Rh2DG069900 Rh2DG210700 Rh2DG560100 Rh3AG245500 Rh3BG095400 Rh4AG018100 Rh4AG084900 Rh4AG177900 Rh4CG092300 Rh4CG194700 Rh5BG350600 Rh6BG362400 Rh7DG198200 Rh7DG403500
rosa_wichuraiana Rw1G008260 Rw1G035940 Rw2G027180 Rw4G003470 Rw4G010610 Rw5G037240 Rw6G036490 Rw7G015690 Rw7G028950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 572
Acc36I ACCTGC 1 cut(s) 572
AccB7I CCANNNNNTGG 1 cut(s) 533
AccBSI CCGCTC 1 cut(s) 324
AccII CGCG 1 cut(s) 728
AciI CCGC 4 cut(s) 324, 335, 726, 728
AclWI GGATC 1 cut(s) 137
AcoI YGGCCR 1 cut(s) 33
AcsI RAATTY 3 cut(s) 258, 538, 752
AcuI CTGAAG 1 cut(s) 27
AfaI GTAC 1 cut(s) 317
AfiI CCNNNNNNNGG 4 cut(s) 35, 152, 533, 718
AgsI TTSAA 6 cut(s) 74, 110, 265, 272, 330, 836
AhdI GACNNNNNGTC 1 cut(s) 203
AjnI CCWGG 1 cut(s) 532
AluBI AGCT 1 cut(s) 233
AluI AGCT 1 cut(s) 233
Alw26I GTCTC 1 cut(s) 770
AlwI GGATC 1 cut(s) 137
Ama87I CYCGRG 1 cut(s) 692
AoxI GGCC 3 cut(s) 33, 215, 608
ApeKI GCWGC 2 cut(s) 626, 659
ApoI RAATTY 3 cut(s) 258, 538, 752
Asp700I GAANNNNTTC 1 cut(s) 105
AspS9I GGNCC 2 cut(s) 26, 216
AsuC2I CCSGG 1 cut(s) 376
AsuHPI GGTGA 1 cut(s) 596
AvaI CYCGRG 1 cut(s) 692
AvaII GGWCC 1 cut(s) 26
BaeGI GKGCMC 1 cut(s) 158
BbvI GCAGC 2 cut(s) 613, 671
BccI CCATC 2 cut(s) 81, 554
BciT130I CCWGG 1 cut(s) 534
BcnI CCSGG 1 cut(s) 376
BcoDI GTCTC 1 cut(s) 770
BfaI CTAG 2 cut(s) 426, 471
BfuAI ACCTGC 1 cut(s) 572
BisI GCNGC 2 cut(s) 627, 660
BlsI GCNGC 2 cut(s) 628, 661
Bme1390I CCNGG 2 cut(s) 376, 534
Bme18I GGWCC 1 cut(s) 26
BmeRI GACNNNNNGTC 1 cut(s) 203
BmeT110I CYCGRG 1 cut(s) 692
BmgT120I GGNCC 2 cut(s) 26, 216
BmiI GGNNCC 1 cut(s) 218
BmrFI CCNGG 2 cut(s) 376, 534
BmsI GCATC 1 cut(s) 174
BpmI CTGGAG 1 cut(s) 504
BpuEI CTTGAG 1 cut(s) 597
BpuMI CCSGG 1 cut(s) 376
BsaJI CCNNGG 1 cut(s) 726
Bsc4I CCNNNNNNNGG 4 cut(s) 35, 152, 533, 718
Bse1I ACTGG 1 cut(s) 29
BseBI CCWGG 1 cut(s) 534
BseDI CCNNGG 1 cut(s) 726
BseGI GGATG 4 cut(s) 100, 189, 384, 568
BseLI CCNNNNNNNGG 4 cut(s) 35, 152, 533, 718
BseNI ACTGG 1 cut(s) 29
BseSI GKGCMC 1 cut(s) 158
BseXI GCAGC 2 cut(s) 613, 671
Bsh1236I CGCG 1 cut(s) 728
BshFI GGCC 3 cut(s) 35, 217, 610
BsiHKCI CYCGRG 1 cut(s) 692
BsiSI CCGG 3 cut(s) 36, 146, 375
BslI CCNNNNNNNGG 4 cut(s) 35, 152, 533, 718
BsmAI GTCTC 1 cut(s) 770
BsnI GGCC 3 cut(s) 35, 217, 610
BsoBI CYCGRG 1 cut(s) 692
Bsp1286I GDGCHC 1 cut(s) 158
Bsp143I GATC 5 cut(s) 49, 142, 227, 667, 847
BspACI CCGC 4 cut(s) 324, 335, 726, 728
BspANI GGCC 3 cut(s) 35, 217, 610
BspFNI CGCG 1 cut(s) 728
BspLI GGNNCC 1 cut(s) 218
BspMI ACCTGC 1 cut(s) 572
BspPI GGATC 1 cut(s) 137
BsrBI CCGCTC 1 cut(s) 324
BsrI ACTGG 1 cut(s) 29
BssECI CCNNGG 1 cut(s) 726
BssMI GATC 5 cut(s) 49, 142, 227, 667, 847
Bst2UI CCWGG 1 cut(s) 534
Bst6I CTCTTC 2 cut(s) 377, 771
BstC8I GCNNGC 3 cut(s) 303, 372, 730
BstDSI CCRYGG 1 cut(s) 726
BstF5I GGATG 4 cut(s) 100, 189, 384, 568
BstFNI CGCG 1 cut(s) 728
BstKTI GATC 5 cut(s) 52, 145, 230, 670, 850
BstMAI GTCTC 1 cut(s) 770
BstMBI GATC 5 cut(s) 49, 142, 227, 667, 847
BstMWI GCNNNNNNNGC 3 cut(s) 193, 431, 635
BstNI CCWGG 1 cut(s) 534
BstNSI RCATGY 2 cut(s) 191, 374
BstSCI CCNGG 2 cut(s) 374, 532
BstSLI GKGCMC 1 cut(s) 158
BstUI CGCG 1 cut(s) 728
BstV1I GCAGC 2 cut(s) 613, 671
BstX2I RGATCY 1 cut(s) 142
BstXI CCANNNNNNTGG 1 cut(s) 553
BstYI RGATCY 1 cut(s) 142
BsuRI GGCC 3 cut(s) 35, 217, 610
BtgI CCRYGG 1 cut(s) 726
BtsCI GGATG 4 cut(s) 100, 189, 384, 568
BtsIMutI CAGTG 1 cut(s) 36
BveI ACCTGC 1 cut(s) 572
Cac8I GCNNGC 3 cut(s) 303, 372, 730
Cfr13I GGNCC 2 cut(s) 26, 216
Cfr42I CCGCGG 1 cut(s) 729
Csp6I GTAC 1 cut(s) 316
CspCI CAANNNNNGTGG 2 cut(s) 233, 268
CviAII CATG 3 cut(s) 188, 371, 559
CviQI GTAC 1 cut(s) 316
DpnI GATC 5 cut(s) 51, 144, 229, 669, 849
DpnII GATC 5 cut(s) 49, 142, 227, 667, 847
DraI TTTAAA 1 cut(s) 460
DriI GACNNNNNGTC 1 cut(s) 203
EaeI YGGCCR 1 cut(s) 33
Eam1104I CTCTTC 2 cut(s) 377, 771
Eam1105I GACNNNNNGTC 1 cut(s) 203
EarI CTCTTC 2 cut(s) 377, 771
Eco147I AGGCCT 1 cut(s) 610
Eco47I GGWCC 1 cut(s) 26
Eco57I CTGAAG 1 cut(s) 27
Eco88I CYCGRG 1 cut(s) 692
EcoRII CCWGG 1 cut(s) 532
EcoT22I ATGCAT 1 cut(s) 189
FaeI CATG 3 cut(s) 191, 374, 562
FatI CATG 3 cut(s) 187, 370, 558
FauI CCCGC 1 cut(s) 721
Fnu4HI GCNGC 2 cut(s) 627, 660
FokI GGATG 4 cut(s) 107, 196, 391, 575
Fsp4HI GCNGC 2 cut(s) 627, 660
FspBI CTAG 2 cut(s) 426, 471
GluI GCNGC 2 cut(s) 627, 660
GsuI CTGGAG 1 cut(s) 504
HaeIII GGCC 3 cut(s) 35, 217, 610
HapII CCGG 3 cut(s) 36, 146, 375
Hin1II CATG 3 cut(s) 191, 374, 562
HinfI GANTC 1 cut(s) 804
HpaII CCGG 3 cut(s) 36, 146, 375
HphI GGTGA 1 cut(s) 596
Hpy188I TCNGA 2 cut(s) 165, 417
Hpy188III TCNNGA 5 cut(s) 74, 483, 692, 694, 836
HpyAV CCTTC 6 cut(s) 243, 259, 494, 612, 616, 649
HpyCH4V TGCA 7 cut(s) 117, 187, 244, 293, 452, 581, 593
HpyF10VI GCNNNNNNNGC 3 cut(s) 193, 431, 635
Hsp92II CATG 3 cut(s) 191, 374, 562
KspI CCGCGG 1 cut(s) 729
Kzo9I GATC 5 cut(s) 49, 142, 227, 667, 847
Lsp1109I GCAGC 2 cut(s) 613, 671
LweI GCATC 1 cut(s) 174
MaeI CTAG 2 cut(s) 426, 471
MaeIII GTNAC 1 cut(s) 428
MalI GATC 5 cut(s) 51, 144, 229, 669, 849
MbiI CCGCTC 1 cut(s) 324
MboI GATC 5 cut(s) 49, 142, 227, 667, 847
MboII GAAGA 5 cut(s) 20, 71, 113, 394, 788
MfeI CAATTG 1 cut(s) 110
MflI RGATCY 1 cut(s) 142
MhlI GDGCHC 1 cut(s) 158
Mph1103I ATGCAT 1 cut(s) 189
MroXI GAANNNNTTC 1 cut(s) 105
MseI TTAA 3 cut(s) 296, 459, 855
MspA1I CMGCKG 1 cut(s) 728
MspI CCGG 3 cut(s) 36, 146, 375
MspR9I CCNGG 2 cut(s) 376, 534
MunI CAATTG 1 cut(s) 110
MvaI CCWGG 1 cut(s) 534
MvnI CGCG 1 cut(s) 728
MwoI GCNNNNNNNGC 3 cut(s) 193, 431, 635
NciI CCSGG 1 cut(s) 376
NdeII GATC 5 cut(s) 49, 142, 227, 667, 847
NlaIII CATG 3 cut(s) 191, 374, 562
NlaIV GGNNCC 1 cut(s) 218
NsiI ATGCAT 1 cut(s) 189
NspI RCATGY 2 cut(s) 191, 374
PaeI GCATGC 1 cut(s) 374
PaeR7I CTCGAG 1 cut(s) 692
PaqCI CACCTGC 1 cut(s) 572
PceI AGGCCT 1 cut(s) 610
PdmI GAANNNNTTC 1 cut(s) 105
PfeI GAWTC 1 cut(s) 804
PflMI CCANNNNNTGG 1 cut(s) 533
PfoI TCCNGGA 1 cut(s) 532
PkrI GCNGC 2 cut(s) 628, 661
Psp6I CCWGG 1 cut(s) 532
PspGI CCWGG 1 cut(s) 532
PspN4I GGNNCC 1 cut(s) 218
PspPI GGNCC 2 cut(s) 26, 216
PsuI RGATCY 1 cut(s) 142
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
SacII CCGCGG 1 cut(s) 729
SaqAI TTAA 3 cut(s) 296, 459, 855
SatI GCNGC 2 cut(s) 627, 660
Sau3AI GATC 5 cut(s) 49, 142, 227, 667, 847
Sau96I GGNCC 2 cut(s) 26, 216
ScrFI CCNGG 2 cut(s) 376, 534
SduI GDGCHC 1 cut(s) 158
SetI ASST 6 cut(s) 28, 235, 254, 270, 576, 586
SfaNI GCATC 1 cut(s) 174
Sfr274I CTCGAG 1 cut(s) 692
Sfr303I CCGCGG 1 cut(s) 729
SgrBI CCGCGG 1 cut(s) 729
SinI GGWCC 1 cut(s) 26
SlaI CTCGAG 1 cut(s) 692
SmlI CTYRAG 2 cut(s) 612, 692
SmoI CTYRAG 2 cut(s) 612, 692
SphI GCATGC 1 cut(s) 374
SseBI AGGCCT 1 cut(s) 610
SsiI CCGC 4 cut(s) 324, 335, 726, 728
SspI AATATT 1 cut(s) 70
SspMI CTAG 2 cut(s) 426, 471
StuI AGGCCT 1 cut(s) 610
StyD4I CCNGG 2 cut(s) 374, 532
TaqI TCGA 4 cut(s) 693, 760, 807, 850
TfiI GAWTC 1 cut(s) 804
Tru1I TTAA 3 cut(s) 296, 459, 855
Tru9I TTAA 3 cut(s) 296, 459, 855
TscAI CASTG 1 cut(s) 36
TseI GCWGC 2 cut(s) 626, 659
TspDTI ATGAA 4 cut(s) 72, 366, 395, 513
TspGWI ACGGA 2 cut(s) 107, 658
TspRI CASTG 1 cut(s) 36
Van91I CCANNNNNTGG 1 cut(s) 533
VpaK11BI GGWCC 1 cut(s) 26
XapI RAATTY 3 cut(s) 258, 538, 752
XceI RCATGY 2 cut(s) 191, 374
XhoI CTCGAG 1 cut(s) 692
XmnI GAANNNNTTC 1 cut(s) 105
XspI CTAG 2 cut(s) 426, 471
Zsp2I ATGCAT 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.