Rmu_sc0008707.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008707.1
OG0000127
Physical Location & Seq
Forward (+)
10358 .. 11436
1079 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008707.1_g000005.1.cds

Sequence Viewer

Length: 1035 bp
atggatgtagatgaggtaattgcaggtgaaactgcagatcctaatgtgaggcctcaaggaaggaaggctgcgaaagaagcaattcggaaaggaaagaaggcagcgaaagatcaaagtcttttgtcaagcacactcaagagtatagcgaacaatcaaatagaggcaaccgcgggtaagaaaaaactcgatgaggaattcgctcgaagtctccaagaggaaaatcaacgagcatgtatcctcttgcaaattgaaatgcgaaaagagcaactcttattacaagagagggaagagcgtattatggagattgatacaagtcaaatgacgccaaataaaaagtgttattggttaagaaagcaaaagaagatagcggagaaagaagatcttggcgagcagatggcaccttctatgggtggatactatctacaacccaattttggtggtgcattcccacaaccaaattttggtggtgtatacccacaacctccttaccccagtgcatacccacaaccaccttgtcccgatggattcccacaacctccctttaccggtggattcccaccatctccttattacaagagagggaagagcgaattaaagagagggaagagctgttattggttaagaaagcaaaagaagatagcggagaaagaagatcttggcgagcagatggcaccttctatgggtggatactatctacaacccaattttggtggtgcattcccacaaccaaattttggtggtgtatacccacaacctccttaccccagtgcatacccacaaccaccttgtcccgatggattcccacaacctccctttaccggtggattcccaccatctcccttcaccggtggattctcacaacccccctacctcgatggatactatctgcaaccaccttaccccgggggatatcctacacaaccacaatttttacctttctctacgggtgattccaccaaccctaaccctaatgatgaaccttcaaacacaaattggatttctagagaggatgaggatcatgatttgaataattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

344

Amino Acids

38.43

Weight (kDa)

5.76

Isoelectric Point (pI)

70.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000127)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02381 FvH4_1g19463 FvH4_1g28433 FvH4_2g16143 FvH4_2g18491 FvH4_2g27711 FvH4_3g19631 FvH4_3g23573 FvH4_4g35743 FvH4_5g23701 FvH4_6g19603 FvH4_6g39781 FvH4_6g40561 FvH4_7g02563 FvH4_7g11472 FvH4_7g17530
rosa_chinensis RchiOBHm_Chr1g0315991 RchiOBHm_Chr1g0318371 RchiOBHm_Chr1g0328341 RchiOBHm_Chr1g0331431 RchiOBHm_Chr1g0344801 RchiOBHm_Chr1g0371461 RchiOBHm_Chr1g0379261 RchiOBHm_Chr2g0117661 RchiOBHm_Chr5g0011791 RchiOBHm_Chr5g0020991 RchiOBHm_Chr5g0060631 RchiOBHm_Chr5g0064181 RchiOBHm_Chr5g0080181 RchiOBHm_Chr6g0254691 RchiOBHm_Chr6g0260101 RchiOBHm_Chr6g0290901 RchiOBHm_Chr7g0201691
rosa_laevigata RLG00000003529 RLG00000009370 RLG00000013568
rosa_multiflora Rmu_co8437743.1_g000001 Rmu_sc0000063.1_g000028 Rmu_sc0000098.1_g000004 Rmu_sc0000166.1_g000028 Rmu_sc0000258.1_g000102 Rmu_sc0000288.1_g000018 Rmu_sc0000333.1_g000043 Rmu_sc0000451.1_g000011 Rmu_sc0000455.1_g000003 Rmu_sc0000479.1_g000002 Rmu_sc0000687.1_g000014 Rmu_sc0000733.1_g000024 Rmu_sc0000736.1_g000001 Rmu_sc0000745.1_g000017 Rmu_sc0000760.1_g000031 Rmu_sc0000776.1_g000044 Rmu_sc0000828.1_g000011 Rmu_sc0000830.1_g000027 Rmu_sc0000857.1_g000025 Rmu_sc0000864.1_g000013 Rmu_sc0001016.1_g000034 Rmu_sc0001016.1_g000035 Rmu_sc0001036.1_g000015 Rmu_sc0001096.1_g000020 Rmu_sc0001145.1_g000023 Rmu_sc0001167.1_g000057 Rmu_sc0001173.1_g000030 Rmu_sc0001260.1_g000006 Rmu_sc0001266.1_g000016 Rmu_sc0001346.1_g000003 Rmu_sc0001346.1_g000004 Rmu_sc0001386.1_g000005 Rmu_sc0001501.1_g000057 Rmu_sc0001565.1_g000058 Rmu_sc0001634.1_g000047 Rmu_sc0001699.1_g000018 Rmu_sc0001700.1_g000041 Rmu_sc0001700.1_g000055 Rmu_sc0001725.1_g000005 Rmu_sc0001823.1_g000005 Rmu_sc0001877.1_g000014 Rmu_sc0001942.1_g000059 Rmu_sc0001966.1_g000033 Rmu_sc0001998.1_g000009 Rmu_sc0002011.1_g000030 Rmu_sc0002147.1_g000007 Rmu_sc0002176.1_g000005 Rmu_sc0002235.1_g000097 Rmu_sc0002324.1_g000002 Rmu_sc0002352.1_g000011 Rmu_sc0002365.1_g000022 Rmu_sc0002548.1_g000007 Rmu_sc0002890.1_g000008 Rmu_sc0002936.1_g000003 Rmu_sc0002955.1_g000016 Rmu_sc0003160.1_g000032 Rmu_sc0003452.1_g000010 Rmu_sc0003490.1_g000023 Rmu_sc0003541.1_g000014 Rmu_sc0003555.1_g000014 Rmu_sc0003759.1_g000008 Rmu_sc0003843.1_g000001 Rmu_sc0003846.1_g000005 Rmu_sc0003890.1_g000019 Rmu_sc0003953.1_g000016 Rmu_sc0003967.1_g000001 Rmu_sc0004068.1_g000002 Rmu_sc0004101.1_g000004 Rmu_sc0004298.1_g000010 Rmu_sc0004507.1_g000008 Rmu_sc0004649.1_g000015 Rmu_sc0004719.1_g000006 Rmu_sc0004751.1_g000012 Rmu_sc0004821.1_g000005 Rmu_sc0004868.1_g000003 Rmu_sc0004876.1_g000023 Rmu_sc0004932.1_g000020 Rmu_sc0005093.1_g000020 Rmu_sc0005132.1_g000019 Rmu_sc0005274.1_g000001 Rmu_sc0005381.1_g000013 Rmu_sc0005693.1_g000009 Rmu_sc0005708.1_g000011 Rmu_sc0005834.1_g000016 Rmu_sc0005966.1_g000017 Rmu_sc0006173.1_g000033 Rmu_sc0006175.1_g000012 Rmu_sc0006590.1_g000004 Rmu_sc0006695.1_g000044 Rmu_sc0007061.1_g000002 Rmu_sc0007069.1_g000023 Rmu_sc0007216.1_g000006 Rmu_sc0008124.1_g000026 Rmu_sc0008148.1_g000028 Rmu_sc0008198.1_g000004 Rmu_sc0008423.1_g000003 Rmu_sc0008441.1_g000011 Rmu_sc0008707.1_g000005 Rmu_sc0009101.1_g000008 Rmu_sc0009240.1_g000039 Rmu_sc0009414.1_g000002 Rmu_sc0009628.1_g000001 Rmu_sc0010048.1_g000007 Rmu_sc0010275.1_g000001 Rmu_sc0010338.1_g000004 Rmu_sc0010659.1_g000005 Rmu_sc0010691.1_g000001 Rmu_sc0011023.1_g000006 Rmu_sc0011533.1_g000001 Rmu_sc0011901.1_g000001 Rmu_sc0012746.1_g000042 Rmu_sc0012773.1_g000005 Rmu_sc0012952.1_g000005 Rmu_sc0014568.1_g000002 Rmu_sc0014568.1_g000003 Rmu_sc0015188.1_g000004 Rmu_sc0019714.1_g000001 Rmu_sc0020148.1_g000003 Rmu_sc0020260.1_g000003 Rmu_sc0021213.1_g000002 Rmu_sc0022616.1_g000001 Rmu_ssc0000084.1_g000006 Rmu_ssc0000116.1_g000017 Rmu_ssc0000116.1_g000018 Rmu_ssc0000189.1_g000037 Rmu_ssc0000330.1_g000009 Rmu_ssc0000359.1_g000004 Rmu_ssc0000366.1_g000031 Rmu_ssc0000386.1_g000056 Rmu_ssc0000387.1_g000006 Rmu_ssc0000400.1_g000065 Rmu_ssc0000440.1_g000006 Rmu_ssc0000452.1_g000014
rosa_roxburghii Rroxscaffold_1G00020180 Rroxscaffold_2G00089580 Rroxscaffold_2G00143500 Rroxscaffold_3G00264360 Rroxscaffold_4G00316450 Rroxscaffold_4G00327050 Rroxscaffold_5G00350260 Rroxscaffold_5G00351750 Rroxscaffold_5G00364680 Rroxscaffold_5G00376220 Rroxscaffold_6G00391720
rosa_rugosa Rorug04G0096700 Rorug05G0284300 Rorug06G0059800 Rorug06G0059900 Rorug06G0060000 Rorug06G0060100 Rorug06G0060200 Rorug06G0127700 Rorug06G0243400
rosa_samantha Rh1AG033000 Rh1AG274600 Rh1DG069700 Rh2DG069900 Rh2DG210700 Rh2DG560100 Rh3AG245500 Rh3BG095400 Rh4AG018100 Rh4AG084900 Rh4AG177900 Rh4CG092300 Rh4CG194700 Rh5BG350600 Rh6BG362400 Rh7DG198200 Rh7DG403500
rosa_wichuraiana Rw1G008260 Rw1G035940 Rw2G027180 Rw4G003470 Rw4G010610 Rw5G037240 Rw6G036490 Rw7G015690 Rw7G028950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 14
Acc36I ACCTGC 1 cut(s) 14
AccB1I GGYRCC 2 cut(s) 397, 670
AccB7I CCANNNNNTGG 2 cut(s) 461, 734
AccI GTMKAC 2 cut(s) 471, 744
AccII CGCG 1 cut(s) 170
AciI CCGC 4 cut(s) 168, 170, 368, 641
AclWI GGATC 2 cut(s) 32, 1023
AcsI RAATTY 3 cut(s) 194, 457, 730
AcyI GRCGYC 1 cut(s) 323
AgeI ACCGGT 3 cut(s) 545, 818, 845
AgsI TTSAA 3 cut(s) 251, 984, 1027
AluBI AGCT 1 cut(s) 609
AluI AGCT 1 cut(s) 609
Alw26I GTCTC 1 cut(s) 212
AlwI GGATC 2 cut(s) 32, 1023
Ama87I CYCGRG 1 cut(s) 902
AoxI GGCC 1 cut(s) 50
ApeKI GCWGC 2 cut(s) 68, 101
ApoI RAATTY 3 cut(s) 194, 457, 730
AsiGI ACCGGT 3 cut(s) 545, 818, 845
Asp700I GAANNNNTTC 1 cut(s) 81
AsuC2I CCSGG 2 cut(s) 903, 904
AsuHPI GGTGA 3 cut(s) 38, 835, 959
AvaI CYCGRG 1 cut(s) 902
BanI GGYRCC 2 cut(s) 397, 670
BbvI GCAGC 2 cut(s) 55, 113
BccI CCATC 7 cut(s) 388, 515, 568, 661, 788, 841, 869
BciVI GTATCC 4 cut(s) 245, 407, 680, 872
BcnI CCSGG 2 cut(s) 903, 904
BcoDI GTCTC 1 cut(s) 212
BfaI CTAG 1 cut(s) 1002
BfmI CTRYAG 1 cut(s) 33
BfuAI ACCTGC 1 cut(s) 14
BfuI GTATCC 4 cut(s) 245, 407, 680, 872
BglII AGATCT 2 cut(s) 379, 652
BisI GCNGC 2 cut(s) 69, 102
BlsI GCNGC 2 cut(s) 70, 103
Bme1390I CCNGG 2 cut(s) 903, 904
BmeT110I CYCGRG 1 cut(s) 902
BmiI GGNNCC 2 cut(s) 399, 672
BmrFI CCNGG 2 cut(s) 903, 904
BmrI ACTGGG 2 cut(s) 486, 759
BmuI ACTGGG 2 cut(s) 486, 759
BpuEI CTTGAG 2 cut(s) 39, 119
BpuMI CCSGG 2 cut(s) 903, 904
BsaBI GATNNNNATC 1 cut(s) 1014
BsaHI GRCGYC 1 cut(s) 323
BsaJI CCNNGG 4 cut(s) 168, 901, 902, 903
BsaWI WCCGGW 3 cut(s) 545, 818, 845
Bse118I RCCGGY 3 cut(s) 545, 818, 845
Bse1I ACTGG 2 cut(s) 492, 765
Bse8I GATNNNNATC 1 cut(s) 1014
BseDI CCNNGG 4 cut(s) 168, 901, 902, 903
BseGI GGATG 2 cut(s) 10, 1015
BseJI GATNNNNATC 1 cut(s) 1014
BseNI ACTGG 2 cut(s) 492, 765
BseXI GCAGC 2 cut(s) 55, 113
Bsh1236I CGCG 1 cut(s) 170
BshFI GGCC 1 cut(s) 52
BshNI GGYRCC 2 cut(s) 397, 670
BshTI ACCGGT 3 cut(s) 545, 818, 845
BsiHKCI CYCGRG 1 cut(s) 902
BsiSI CCGG 4 cut(s) 546, 819, 846, 903
BslFI GGGAC 2 cut(s) 501, 774
BsmAI GTCTC 1 cut(s) 212
BsmFI GGGAC 2 cut(s) 501, 774
BsmI GAATGC 2 cut(s) 443, 716
BsnI GGCC 1 cut(s) 52
BsoBI CYCGRG 1 cut(s) 902
Bsp143I GATC 5 cut(s) 37, 109, 379, 652, 1015
BspACI CCGC 4 cut(s) 168, 170, 368, 641
BspANI GGCC 1 cut(s) 52
BspFNI CGCG 1 cut(s) 170
BspHI TCATGA 1 cut(s) 1018
BspLI GGNNCC 2 cut(s) 399, 672
BspMAI CTGCAG 1 cut(s) 37
BspMI ACCTGC 1 cut(s) 14
BspPI GGATC 2 cut(s) 32, 1023
BspQI GCTCTTC 3 cut(s) 282, 578, 599
BspT107I GGYRCC 2 cut(s) 397, 670
BsrFI RCCGGY 3 cut(s) 545, 818, 845
BsrI ACTGG 2 cut(s) 492, 765
BssAI RCCGGY 3 cut(s) 545, 818, 845
BssECI CCNNGG 4 cut(s) 168, 901, 902, 903
BssMI GATC 5 cut(s) 37, 109, 379, 652, 1015
BssNAI GTATAC 2 cut(s) 472, 745
BssNI GRCGYC 1 cut(s) 323
Bst1107I GTATAC 2 cut(s) 472, 745
Bst6I CTCTTC 3 cut(s) 282, 578, 599
BstACI GRCGYC 1 cut(s) 323
BstC8I GCNNGC 2 cut(s) 389, 662
BstDSI CCRYGG 1 cut(s) 168
BstF5I GGATG 2 cut(s) 10, 1015
BstFNI CGCG 1 cut(s) 170
BstKTI GATC 5 cut(s) 40, 112, 382, 655, 1018
BstMAI GTCTC 1 cut(s) 212
BstMBI GATC 5 cut(s) 37, 109, 379, 652, 1015
BstMWI GCNNNNNNNGC 2 cut(s) 77, 262
BstNSI RCATGY 1 cut(s) 234
BstSCI CCNGG 2 cut(s) 901, 902
BstSFI CTRYAG 1 cut(s) 33
BstUI CGCG 1 cut(s) 170
BstV1I GCAGC 2 cut(s) 55, 113
BstX2I RGATCY 3 cut(s) 37, 379, 652
BstYI RGATCY 3 cut(s) 37, 379, 652
BstZ17I GTATAC 2 cut(s) 472, 745
BsuI GTATCC 4 cut(s) 245, 407, 680, 872
BsuRI GGCC 1 cut(s) 52
BtgI CCRYGG 1 cut(s) 168
BtsCI GGATG 2 cut(s) 10, 1015
BtsIMutI CAGTG 2 cut(s) 499, 772
BveI ACCTGC 1 cut(s) 14
Cac8I GCNNGC 2 cut(s) 389, 662
CciI TCATGA 1 cut(s) 1018
Cfr10I RCCGGY 3 cut(s) 545, 818, 845
Cfr42I CCGCGG 1 cut(s) 171
Cfr9I CCCGGG 1 cut(s) 902
CseI GACGC 1 cut(s) 331
CspAI ACCGGT 3 cut(s) 545, 818, 845
CspCI CAANNNNNGTGG 4 cut(s) 418, 453, 691, 726
CviAII CATG 2 cut(s) 231, 1019
CviJI RGCY 3 cut(s) 52, 68, 609
CviKI_1 RGCY 3 cut(s) 52, 68, 609
DpnI GATC 5 cut(s) 39, 111, 381, 654, 1017
DpnII GATC 5 cut(s) 37, 109, 379, 652, 1015
Eam1104I CTCTTC 3 cut(s) 282, 578, 599
EarI CTCTTC 3 cut(s) 282, 578, 599
Eco147I AGGCCT 1 cut(s) 52
Eco32I GATATC 1 cut(s) 911
Eco88I CYCGRG 1 cut(s) 902
EcoRI GAATTC 1 cut(s) 194
EcoRV GATATC 1 cut(s) 911
FaeI CATG 2 cut(s) 234, 1022
FalI AAGNNNNNCTT 4 cut(s) 366, 398, 639, 671
FaqI GGGAC 2 cut(s) 501, 774
FatI CATG 2 cut(s) 230, 1018
FauI CCCGC 1 cut(s) 163
FblI GTMKAC 2 cut(s) 471, 744
Fnu4HI GCNGC 2 cut(s) 69, 102
FokI GGATG 2 cut(s) 17, 1022
Fsp4HI GCNGC 2 cut(s) 69, 102
FspBI CTAG 1 cut(s) 1002
GluI GCNGC 2 cut(s) 69, 102
HaeIII GGCC 1 cut(s) 52
HapII CCGG 4 cut(s) 546, 819, 846, 903
HgaI GACGC 1 cut(s) 331
Hin1I GRCGYC 1 cut(s) 323
Hin1II CATG 2 cut(s) 234, 1022
HinfI GANTC 6 cut(s) 525, 552, 798, 825, 852, 950
HpaII CCGG 4 cut(s) 546, 819, 846, 903
HphI GGTGA 3 cut(s) 38, 835, 959
Hpy166II GTNNAC 2 cut(s) 472, 745
Hpy188I TCNGA 1 cut(s) 87
Hpy188III TCNNGA 5 cut(s) 136, 518, 791, 1002, 1019
Hpy8I GTNNAC 2 cut(s) 472, 745
HpyAV CCTTC 7 cut(s) 54, 58, 91, 411, 684, 850, 990
HpyCH4V TGCA 8 cut(s) 23, 35, 244, 443, 497, 716, 770, 889
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 262
Hsp92I GRCGYC 1 cut(s) 323
Hsp92II CATG 2 cut(s) 234, 1022
KspI CCGCGG 1 cut(s) 171
Kzo9I GATC 5 cut(s) 37, 109, 379, 652, 1015
LguI GCTCTTC 3 cut(s) 282, 578, 599
LpnPI CCDG 7 cut(s) 9, 505, 559, 778, 832, 859, 916
Lsp1109I GCAGC 2 cut(s) 55, 113
MaeI CTAG 1 cut(s) 1002
MalI GATC 5 cut(s) 39, 111, 381, 654, 1017
MboI GATC 5 cut(s) 37, 109, 379, 652, 1015
MboII GAAGA 7 cut(s) 299, 373, 389, 595, 616, 646, 662
MflI RGATCY 3 cut(s) 37, 379, 652
MroXI GAANNNNTTC 1 cut(s) 81
MseI TTAA 3 cut(s) 347, 593, 620
MspA1I CMGCKG 1 cut(s) 170
MspI CCGG 4 cut(s) 546, 819, 846, 903
MspR9I CCNGG 2 cut(s) 903, 904
Mva1269I GAATGC 2 cut(s) 443, 716
MvnI CGCG 1 cut(s) 170
MwoI GCNNNNNNNGC 2 cut(s) 77, 262
NciI CCSGG 2 cut(s) 903, 904
NdeII GATC 5 cut(s) 37, 109, 379, 652, 1015
NlaIII CATG 2 cut(s) 234, 1022
NlaIV GGNNCC 2 cut(s) 399, 672
NspI RCATGY 1 cut(s) 234
PagI TCATGA 1 cut(s) 1018
PaqCI CACCTGC 1 cut(s) 14
PceI AGGCCT 1 cut(s) 52
PciSI GCTCTTC 3 cut(s) 282, 578, 599
PctI GAATGC 2 cut(s) 443, 716
PdmI GAANNNNTTC 1 cut(s) 81
PfeI GAWTC 6 cut(s) 525, 552, 798, 825, 852, 950
PflMI CCANNNNNTGG 2 cut(s) 461, 734
PinAI ACCGGT 3 cut(s) 545, 818, 845
PkrI GCNGC 2 cut(s) 70, 103
PspN4I GGNNCC 2 cut(s) 399, 672
PstI CTGCAG 1 cut(s) 37
PsuI RGATCY 3 cut(s) 37, 379, 652
SacII CCGCGG 1 cut(s) 171
SapI GCTCTTC 3 cut(s) 282, 578, 599
SaqAI TTAA 3 cut(s) 347, 593, 620
SatI GCNGC 2 cut(s) 69, 102
Sau3AI GATC 5 cut(s) 37, 109, 379, 652, 1015
ScrFI CCNGG 2 cut(s) 903, 904
SfcI CTRYAG 1 cut(s) 33
Sfr303I CCGCGG 1 cut(s) 171
SgrAI CRCCGGYG 1 cut(s) 845
SgrBI CCGCGG 1 cut(s) 171
SmaI CCCGGG 1 cut(s) 904
SmlI CTYRAG 2 cut(s) 54, 134
SmoI CTYRAG 2 cut(s) 54, 134
SseBI AGGCCT 1 cut(s) 52
SsiI CCGC 4 cut(s) 168, 170, 368, 641
SspMI CTAG 1 cut(s) 1002
StuI AGGCCT 1 cut(s) 52
StyD4I CCNGG 2 cut(s) 901, 902
TaqI TCGA 3 cut(s) 186, 202, 873
TfiI GAWTC 6 cut(s) 525, 552, 798, 825, 852, 950
Tru1I TTAA 3 cut(s) 347, 593, 620
Tru9I TTAA 3 cut(s) 347, 593, 620
TscAI CASTG 2 cut(s) 499, 772
TseI GCWGC 2 cut(s) 68, 101
TspDTI ATGAA 1 cut(s) 990
TspMI CCCGGG 1 cut(s) 902
TspRI CASTG 2 cut(s) 499, 772
Van91I CCANNNNNTGG 2 cut(s) 461, 734
XapI RAATTY 3 cut(s) 194, 457, 730
XbaI TCTAGA 1 cut(s) 1001
XceI RCATGY 1 cut(s) 234
XmaI CCCGGG 1 cut(s) 902
XmiI GTMKAC 2 cut(s) 471, 744
XmnI GAANNNNTTC 1 cut(s) 81
XspI CTAG 1 cut(s) 1002
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.