Rroxscaffold_5G00364680

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000127
Physical Location & Seq
Forward (+)
45874890 .. 45877676
2787 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00364680.1

Sequence Viewer

Length: 951 bp
ATGAAGAGAAGAGGGAAGAAAAGAAGACACAATTTTCAGAGTTTTGATAGTTACGCTGTTATGGAGGGCTTTGCACAATTTAAAGACATCCCTAGCCATGCATCCGAAGGAACATCAAATGAAGGAAATCAACATACGCACACACAACCAATTGCTGAAAATTCTCCCATCAACTTGGACATGGATGTAGATGAGGTAATTGCAGGTGAAACTGCAGATCCTAATGTGAGGCCTCAAGGAAGGAAGACTGCGAAAGAAGCTATTCGGAAAGGAAAGAAGGCAGCGAAAGATCGAAGTCCTTTGTCAAGCGCCGTCGAGAGTATAGCGAACAACCAAATAGAGGCAACTGCGGGCAAGAAAAAACTCGATGAGGAATTTGCTCGAAGTTTCCAAGAGGAAAATCAACGAGAATGTATCCGATTGCAAATCGAAATGCGAAAAGAGAAACTTCTATTACAAGAGAGGGAAGAGCGAATTAAAGAGAGGAAAGAGCGTATTATGGAGATTGATACAAGTCAAATGACGCCAACTAAAAAGCGTTATTGGTCAAGAAAGCAAAAGAAGATAGCGGAGAAAGAAGATCTTGGCGAGCAGATGCCACCTTCTATGGGTGGATACTATCCGCAACCCAATTTTGGTGCATTCCCACAACTAAATTTTAGTGGTGCATACCCACAACCTCCTTACCCCAAAGTGCATACCCGCAACCACCTTACCTCGGTGCATACCCACAACCACCTTGCCCCGATGGATTCCCACAACCTCCCTTCACCGGTGGATTCCCACAACCCCTTACCCCGGTGGATACTATCGCAACCACCTTACCCCGGGGATATCCTACACAACCACAATTTTCACCTATCTCTACGGGTGATTCCACCAACCCTAACCCTAATGATGAACCTTCAAACACAAATTGGATTCCTAGAGAGGATGAGGATCATGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

316

Amino Acids

36.38

Weight (kDa)

9.4

Isoelectric Point (pI)

58.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 31 - 189 3.9e-08 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000127)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02381 FvH4_1g19463 FvH4_1g28433 FvH4_2g16143 FvH4_2g18491 FvH4_2g27711 FvH4_3g19631 FvH4_3g23573 FvH4_4g35743 FvH4_5g23701 FvH4_6g19603 FvH4_6g39781 FvH4_6g40561 FvH4_7g02563 FvH4_7g11472 FvH4_7g17530
rosa_chinensis RchiOBHm_Chr1g0315991 RchiOBHm_Chr1g0318371 RchiOBHm_Chr1g0328341 RchiOBHm_Chr1g0331431 RchiOBHm_Chr1g0344801 RchiOBHm_Chr1g0371461 RchiOBHm_Chr1g0379261 RchiOBHm_Chr2g0117661 RchiOBHm_Chr5g0011791 RchiOBHm_Chr5g0020991 RchiOBHm_Chr5g0060631 RchiOBHm_Chr5g0064181 RchiOBHm_Chr5g0080181 RchiOBHm_Chr6g0254691 RchiOBHm_Chr6g0260101 RchiOBHm_Chr6g0290901 RchiOBHm_Chr7g0201691
rosa_laevigata RLG00000003529 RLG00000009370 RLG00000013568
rosa_multiflora Rmu_co8437743.1_g000001 Rmu_sc0000063.1_g000028 Rmu_sc0000098.1_g000004 Rmu_sc0000166.1_g000028 Rmu_sc0000258.1_g000102 Rmu_sc0000288.1_g000018 Rmu_sc0000333.1_g000043 Rmu_sc0000451.1_g000011 Rmu_sc0000455.1_g000003 Rmu_sc0000479.1_g000002 Rmu_sc0000687.1_g000014 Rmu_sc0000733.1_g000024 Rmu_sc0000736.1_g000001 Rmu_sc0000745.1_g000017 Rmu_sc0000760.1_g000031 Rmu_sc0000776.1_g000044 Rmu_sc0000828.1_g000011 Rmu_sc0000830.1_g000027 Rmu_sc0000857.1_g000025 Rmu_sc0000864.1_g000013 Rmu_sc0001016.1_g000034 Rmu_sc0001016.1_g000035 Rmu_sc0001036.1_g000015 Rmu_sc0001096.1_g000020 Rmu_sc0001145.1_g000023 Rmu_sc0001167.1_g000057 Rmu_sc0001173.1_g000030 Rmu_sc0001260.1_g000006 Rmu_sc0001266.1_g000016 Rmu_sc0001346.1_g000003 Rmu_sc0001346.1_g000004 Rmu_sc0001386.1_g000005 Rmu_sc0001501.1_g000057 Rmu_sc0001565.1_g000058 Rmu_sc0001634.1_g000047 Rmu_sc0001699.1_g000018 Rmu_sc0001700.1_g000041 Rmu_sc0001700.1_g000055 Rmu_sc0001725.1_g000005 Rmu_sc0001823.1_g000005 Rmu_sc0001877.1_g000014 Rmu_sc0001942.1_g000059 Rmu_sc0001966.1_g000033 Rmu_sc0001998.1_g000009 Rmu_sc0002011.1_g000030 Rmu_sc0002147.1_g000007 Rmu_sc0002176.1_g000005 Rmu_sc0002235.1_g000097 Rmu_sc0002324.1_g000002 Rmu_sc0002352.1_g000011 Rmu_sc0002365.1_g000022 Rmu_sc0002548.1_g000007 Rmu_sc0002890.1_g000008 Rmu_sc0002936.1_g000003 Rmu_sc0002955.1_g000016 Rmu_sc0003160.1_g000032 Rmu_sc0003452.1_g000010 Rmu_sc0003490.1_g000023 Rmu_sc0003541.1_g000014 Rmu_sc0003555.1_g000014 Rmu_sc0003759.1_g000008 Rmu_sc0003843.1_g000001 Rmu_sc0003846.1_g000005 Rmu_sc0003890.1_g000019 Rmu_sc0003953.1_g000016 Rmu_sc0003967.1_g000001 Rmu_sc0004068.1_g000002 Rmu_sc0004101.1_g000004 Rmu_sc0004298.1_g000010 Rmu_sc0004507.1_g000008 Rmu_sc0004649.1_g000015 Rmu_sc0004719.1_g000006 Rmu_sc0004751.1_g000012 Rmu_sc0004821.1_g000005 Rmu_sc0004868.1_g000003 Rmu_sc0004876.1_g000023 Rmu_sc0004932.1_g000020 Rmu_sc0005093.1_g000020 Rmu_sc0005132.1_g000019 Rmu_sc0005274.1_g000001 Rmu_sc0005381.1_g000013 Rmu_sc0005693.1_g000009 Rmu_sc0005708.1_g000011 Rmu_sc0005834.1_g000016 Rmu_sc0005966.1_g000017 Rmu_sc0006173.1_g000033 Rmu_sc0006175.1_g000012 Rmu_sc0006590.1_g000004 Rmu_sc0006695.1_g000044 Rmu_sc0007061.1_g000002 Rmu_sc0007069.1_g000023 Rmu_sc0007216.1_g000006 Rmu_sc0008124.1_g000026 Rmu_sc0008148.1_g000028 Rmu_sc0008198.1_g000004 Rmu_sc0008423.1_g000003 Rmu_sc0008441.1_g000011 Rmu_sc0008707.1_g000005 Rmu_sc0009101.1_g000008 Rmu_sc0009240.1_g000039 Rmu_sc0009414.1_g000002 Rmu_sc0009628.1_g000001 Rmu_sc0010048.1_g000007 Rmu_sc0010275.1_g000001 Rmu_sc0010338.1_g000004 Rmu_sc0010659.1_g000005 Rmu_sc0010691.1_g000001 Rmu_sc0011023.1_g000006 Rmu_sc0011533.1_g000001 Rmu_sc0011901.1_g000001 Rmu_sc0012746.1_g000042 Rmu_sc0012773.1_g000005 Rmu_sc0012952.1_g000005 Rmu_sc0014568.1_g000002 Rmu_sc0014568.1_g000003 Rmu_sc0015188.1_g000004 Rmu_sc0019714.1_g000001 Rmu_sc0020148.1_g000003 Rmu_sc0020260.1_g000003 Rmu_sc0021213.1_g000002 Rmu_sc0022616.1_g000001 Rmu_ssc0000084.1_g000006 Rmu_ssc0000116.1_g000017 Rmu_ssc0000116.1_g000018 Rmu_ssc0000189.1_g000037 Rmu_ssc0000330.1_g000009 Rmu_ssc0000359.1_g000004 Rmu_ssc0000366.1_g000031 Rmu_ssc0000386.1_g000056 Rmu_ssc0000387.1_g000006 Rmu_ssc0000400.1_g000065 Rmu_ssc0000440.1_g000006 Rmu_ssc0000452.1_g000014
rosa_roxburghii Rroxscaffold_1G00020180 Rroxscaffold_2G00089580 Rroxscaffold_2G00143500 Rroxscaffold_3G00264360 Rroxscaffold_4G00316450 Rroxscaffold_4G00327050 Rroxscaffold_5G00350260 Rroxscaffold_5G00351750 Rroxscaffold_5G00364680 Rroxscaffold_5G00376220 Rroxscaffold_6G00391720
rosa_rugosa Rorug04G0096700 Rorug05G0284300 Rorug06G0059800 Rorug06G0059900 Rorug06G0060000 Rorug06G0060100 Rorug06G0060200 Rorug06G0127700 Rorug06G0243400
rosa_samantha Rh1AG033000 Rh1AG274600 Rh1DG069700 Rh2DG069900 Rh2DG210700 Rh2DG560100 Rh3AG245500 Rh3BG095400 Rh4AG018100 Rh4AG084900 Rh4AG177900 Rh4CG092300 Rh4CG194700 Rh5BG350600 Rh6BG362400 Rh7DG198200 Rh7DG403500
rosa_wichuraiana Rw1G008260 Rw1G035940 Rw2G027180 Rw4G003470 Rw4G010610 Rw5G037240 Rw6G036490 Rw7G015690 Rw7G028950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 194
Acc36I ACCTGC 1 cut(s) 194
AciI CCGC 4 cut(s) 350, 569, 623, 703
AclWI GGATC 2 cut(s) 212, 947
AcsI RAATTY 3 cut(s) 160, 374, 655
AcyI GRCGYC 1 cut(s) 524
AfiI CCNNNNNNNGG 7 cut(s) 340, 608, 635, 718, 772, 798, 827
AgeI ACCGGT 1 cut(s) 772
AgsI TTSAA 1 cut(s) 908
AluBI AGCT 1 cut(s) 260
AluI AGCT 1 cut(s) 260
AlwI GGATC 2 cut(s) 212, 947
Ama87I CYCGRG 1 cut(s) 827
AoxI GGCC 1 cut(s) 230
ApeKI GCWGC 1 cut(s) 281
ApoI RAATTY 3 cut(s) 160, 374, 655
AsiGI ACCGGT 1 cut(s) 772
Asp700I GAANNNNTTC 1 cut(s) 261
AspLEI GCGC 1 cut(s) 311
AsuC2I CCSGG 3 cut(s) 799, 828, 829
AsuHPI GGTGA 4 cut(s) 218, 762, 848, 883
AvaI CYCGRG 1 cut(s) 827
BbsI GAAGAC 2 cut(s) 31, 251
BbvI GCAGC 1 cut(s) 293
BccI CCATC 2 cut(s) 176, 742
BceAI ACGGC 1 cut(s) 296
BciVI GTATCC 3 cut(s) 425, 608, 798
BcnI CCSGG 3 cut(s) 799, 828, 829
BfaI CTAG 2 cut(s) 93, 926
BfmI CTRYAG 1 cut(s) 213
BfoI RGCGCY 1 cut(s) 312
BfuAI ACCTGC 1 cut(s) 194
BfuI GTATCC 3 cut(s) 425, 608, 798
BglII AGATCT 1 cut(s) 580
BisI GCNGC 1 cut(s) 282
BlsI GCNGC 1 cut(s) 283
Bme1390I CCNGG 3 cut(s) 799, 828, 829
BmeT110I CYCGRG 1 cut(s) 827
BmrFI CCNGG 3 cut(s) 799, 828, 829
BmsI GCATC 2 cut(s) 110, 585
BpiI GAAGAC 2 cut(s) 31, 251
BpuEI CTTGAG 1 cut(s) 219
BpuMI CCSGG 3 cut(s) 799, 828, 829
BsaBI GATNNNNATC 1 cut(s) 938
BsaHI GRCGYC 1 cut(s) 524
BsaJI CCNNGG 5 cut(s) 717, 797, 826, 827, 828
BsaWI WCCGGW 1 cut(s) 772
Bsc4I CCNNNNNNNGG 7 cut(s) 340, 608, 635, 718, 772, 798, 827
Bse118I RCCGGY 1 cut(s) 772
Bse8I GATNNNNATC 1 cut(s) 938
BseDI CCNNGG 5 cut(s) 717, 797, 826, 827, 828
BseGI GGATG 4 cut(s) 87, 101, 190, 939
BseJI GATNNNNATC 1 cut(s) 938
BseLI CCNNNNNNNGG 7 cut(s) 340, 608, 635, 718, 772, 798, 827
BseXI GCAGC 1 cut(s) 293
BshFI GGCC 1 cut(s) 232
BshTI ACCGGT 1 cut(s) 772
BsiHKCI CYCGRG 1 cut(s) 827
BsiSI CCGG 3 cut(s) 773, 799, 828
BslI CCNNNNNNNGG 7 cut(s) 340, 608, 635, 718, 772, 798, 827
BsmI GAATGC 1 cut(s) 641
BsnI GGCC 1 cut(s) 232
BsoBI CYCGRG 1 cut(s) 827
Bsp143I GATC 4 cut(s) 217, 289, 580, 939
BspACI CCGC 4 cut(s) 350, 569, 623, 703
BspANI GGCC 1 cut(s) 232
BspHI TCATGA 1 cut(s) 942
BspMAI CTGCAG 1 cut(s) 217
BspMI ACCTGC 1 cut(s) 194
BspPI GGATC 2 cut(s) 212, 947
BspQI GCTCTTC 1 cut(s) 462
BsrFI RCCGGY 1 cut(s) 772
BssAI RCCGGY 1 cut(s) 772
BssECI CCNNGG 5 cut(s) 717, 797, 826, 827, 828
BssMI GATC 4 cut(s) 217, 289, 580, 939
BssNI GRCGYC 1 cut(s) 524
Bst6I CTCTTC 2 cut(s) 4, 462
BstACI GRCGYC 1 cut(s) 524
BstC8I GCNNGC 2 cut(s) 352, 590
BstF5I GGATG 4 cut(s) 87, 101, 190, 939
BstH2I RGCGCY 1 cut(s) 312
BstHHI GCGC 1 cut(s) 311
BstKTI GATC 4 cut(s) 220, 292, 583, 942
BstMBI GATC 4 cut(s) 217, 289, 580, 939
BstMWI GCNNNNNNNGC 1 cut(s) 257
BstSCI CCNGG 3 cut(s) 797, 826, 827
BstSFI CTRYAG 1 cut(s) 213
BstV1I GCAGC 1 cut(s) 293
BstV2I GAAGAC 2 cut(s) 31, 251
BstX2I RGATCY 2 cut(s) 217, 580
BstXI CCANNNNNNTGG 1 cut(s) 175
BstYI RGATCY 2 cut(s) 217, 580
BsuI GTATCC 3 cut(s) 425, 608, 798
BsuRI GGCC 1 cut(s) 232
BtsCI GGATG 4 cut(s) 87, 101, 190, 939
BveI ACCTGC 1 cut(s) 194
Cac8I GCNNGC 2 cut(s) 352, 590
CciI TCATGA 1 cut(s) 942
CfoI GCGC 1 cut(s) 311
Cfr10I RCCGGY 1 cut(s) 772
Cfr9I CCCGGG 1 cut(s) 827
CseI GACGC 1 cut(s) 532
CspAI ACCGGT 1 cut(s) 772
CviAII CATG 3 cut(s) 98, 181, 943
CviJI RGCY 4 cut(s) 69, 96, 232, 260
CviKI_1 RGCY 4 cut(s) 69, 96, 232, 260
DpnI GATC 4 cut(s) 219, 291, 582, 941
DpnII GATC 4 cut(s) 217, 289, 580, 939
DraI TTTAAA 1 cut(s) 82
Eam1104I CTCTTC 2 cut(s) 4, 462
EarI CTCTTC 2 cut(s) 4, 462
Eco147I AGGCCT 1 cut(s) 232
Eco32I GATATC 1 cut(s) 835
Eco88I CYCGRG 1 cut(s) 827
EcoRV GATATC 1 cut(s) 835
EcoT22I ATGCAT 1 cut(s) 103
FaeI CATG 3 cut(s) 101, 184, 946
FalI AAGNNNNNCTT 4 cut(s) 432, 464, 567, 599
FatI CATG 3 cut(s) 97, 180, 942
FauI CCCGC 2 cut(s) 343, 710
Fnu4HI GCNGC 1 cut(s) 282
FokI GGATG 4 cut(s) 74, 88, 197, 946
Fsp4HI GCNGC 1 cut(s) 282
FspBI CTAG 2 cut(s) 93, 926
GlaI GCGC 1 cut(s) 310
GluI GCNGC 1 cut(s) 282
HaeII RGCGCY 1 cut(s) 312
HaeIII GGCC 1 cut(s) 232
HapII CCGG 3 cut(s) 773, 799, 828
HgaI GACGC 1 cut(s) 532
HhaI GCGC 1 cut(s) 311
Hin1I GRCGYC 1 cut(s) 524
Hin1II CATG 3 cut(s) 101, 184, 946
Hin6I GCGC 1 cut(s) 309
HinP1I GCGC 1 cut(s) 309
HinfI GANTC 4 cut(s) 752, 779, 874, 921
HpaII CCGG 3 cut(s) 773, 799, 828
HphI GGTGA 4 cut(s) 218, 762, 848, 883
Hpy188I TCNGA 4 cut(s) 39, 106, 267, 419
Hpy188III TCNNGA 3 cut(s) 316, 549, 943
Hpy99I CGWCG 1 cut(s) 317
HpyAV CCTTC 7 cut(s) 101, 116, 234, 271, 612, 777, 914
HpyCH4V TGCA 9 cut(s) 74, 101, 203, 215, 424, 641, 668, 697, 724
HpyF10VI GCNNNNNNNGC 1 cut(s) 257
Hsp92I GRCGYC 1 cut(s) 524
Hsp92II CATG 3 cut(s) 101, 184, 946
HspAI GCGC 1 cut(s) 309
Kzo9I GATC 4 cut(s) 217, 289, 580, 939
LguI GCTCTTC 1 cut(s) 462
LpnPI CCDG 4 cut(s) 189, 786, 812, 841
Lsp1109I GCAGC 1 cut(s) 293
LweI GCATC 2 cut(s) 110, 585
MaeI CTAG 2 cut(s) 93, 926
MaeIII GTNAC 1 cut(s) 50
MalI GATC 4 cut(s) 219, 291, 582, 941
MboI GATC 4 cut(s) 217, 289, 580, 939
MboII GAAGA 8 cut(s) 16, 21, 28, 36, 256, 479, 574, 590
MfeI CAATTG 1 cut(s) 150
MflI RGATCY 2 cut(s) 217, 580
Mph1103I ATGCAT 1 cut(s) 103
MroXI GAANNNNTTC 1 cut(s) 261
MseI TTAA 2 cut(s) 81, 477
MspI CCGG 3 cut(s) 773, 799, 828
MspR9I CCNGG 3 cut(s) 799, 828, 829
MunI CAATTG 1 cut(s) 150
Mva1269I GAATGC 1 cut(s) 641
MwoI GCNNNNNNNGC 1 cut(s) 257
NciI CCSGG 3 cut(s) 799, 828, 829
NdeII GATC 4 cut(s) 217, 289, 580, 939
NlaIII CATG 3 cut(s) 101, 184, 946
NsiI ATGCAT 1 cut(s) 103
PagI TCATGA 1 cut(s) 942
PaqCI CACCTGC 1 cut(s) 194
PceI AGGCCT 1 cut(s) 232
PciSI GCTCTTC 1 cut(s) 462
PctI GAATGC 1 cut(s) 641
PdmI GAANNNNTTC 1 cut(s) 261
PfeI GAWTC 4 cut(s) 752, 779, 874, 921
PinAI ACCGGT 1 cut(s) 772
PkrI GCNGC 1 cut(s) 283
PstI CTGCAG 1 cut(s) 217
PsuI RGATCY 2 cut(s) 217, 580
SapI GCTCTTC 1 cut(s) 462
SaqAI TTAA 2 cut(s) 81, 477
SatI GCNGC 1 cut(s) 282
Sau3AI GATC 4 cut(s) 217, 289, 580, 939
ScrFI CCNGG 3 cut(s) 799, 828, 829
SfaNI GCATC 2 cut(s) 110, 585
SfcI CTRYAG 1 cut(s) 213
SgrAI CRCCGGYG 1 cut(s) 772
SmaI CCCGGG 1 cut(s) 829
SmlI CTYRAG 1 cut(s) 234
SmoI CTYRAG 1 cut(s) 234
SseBI AGGCCT 1 cut(s) 232
SsiI CCGC 4 cut(s) 350, 569, 623, 703
SspMI CTAG 2 cut(s) 93, 926
StuI AGGCCT 1 cut(s) 232
StyD4I CCNGG 3 cut(s) 797, 826, 827
TaqI TCGA 5 cut(s) 292, 315, 366, 382, 429
TfiI GAWTC 4 cut(s) 752, 779, 874, 921
Tru1I TTAA 2 cut(s) 81, 477
Tru9I TTAA 2 cut(s) 81, 477
TseI GCWGC 1 cut(s) 281
TspDTI ATGAA 3 cut(s) 17, 135, 914
TspMI CCCGGG 1 cut(s) 827
XapI RAATTY 3 cut(s) 160, 374, 655
XmaI CCCGGG 1 cut(s) 827
XmnI GAANNNNTTC 1 cut(s) 261
XspI CTAG 2 cut(s) 93, 926
Zsp2I ATGCAT 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.