Rmu_ssc0000440.1_g000006

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000440.1
OG0000127
Physical Location & Seq
Reverse (-)
21315 .. 22576
1262 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000440.1_g000006.1.cds

Sequence Viewer

Length: 852 bp
atggccgaacaaaggggcacacgtccagtggccggacaagagggagatcaaaatgaagatgaggttacccaagacaaaagaagatggacagatgaggaagatgttcaattgtgcaagtcttggaaagttgcatcaaattggcccaagagccgatcagccgaatctttgcagggaaggtggaaaattttgaaggttgaactctttgagtggcattgtgcattaaggcaagcgaaaaattggaacaagagcggttcgaatgctgttaatgaggacaaaagacacaattttcagagctttaatagttacgctgttgtggagggctttgcacaatttaaagacatccctagccatacatccggaggaacatcaaatgaaggaaatcaacatatgcgcacacaaccaattgctaaaaattcccccatcaacttagacatggatgtagatgaggtaattgcaggtgaaactgcagatcctaatgtgaggcctcaaggaaggaaggctgtgaaagaagcaatacggaaaggaaagaaggcagcgaaagatcaaagtcatttgtcaagcagtctcgagagtatagcgaacaaccaaataaaggcaaccaagggcaagaaaaaactcgatgacgaattcgctcgaagtctccaagaggaagagaaaagagcatgtatcctcttgcaaatcgaaatacgaaaagagcaactcctatttcaagaaaggcaagatcgaattaaagagagggaagagcgaaataaagagagggaagagcgtattatggagattgatacaagtaaaatgacaccaaataaaaagcgatattggtcaaaaaaacaaaagaagatagcggagaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

283

Amino Acids

32.79

Weight (kDa)

9.3

Isoelectric Point (pI)

55.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000127)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02381 FvH4_1g19463 FvH4_1g28433 FvH4_2g16143 FvH4_2g18491 FvH4_2g27711 FvH4_3g19631 FvH4_3g23573 FvH4_4g35743 FvH4_5g23701 FvH4_6g19603 FvH4_6g39781 FvH4_6g40561 FvH4_7g02563 FvH4_7g11472 FvH4_7g17530
rosa_chinensis RchiOBHm_Chr1g0315991 RchiOBHm_Chr1g0318371 RchiOBHm_Chr1g0328341 RchiOBHm_Chr1g0331431 RchiOBHm_Chr1g0344801 RchiOBHm_Chr1g0371461 RchiOBHm_Chr1g0379261 RchiOBHm_Chr2g0117661 RchiOBHm_Chr5g0011791 RchiOBHm_Chr5g0020991 RchiOBHm_Chr5g0060631 RchiOBHm_Chr5g0064181 RchiOBHm_Chr5g0080181 RchiOBHm_Chr6g0254691 RchiOBHm_Chr6g0260101 RchiOBHm_Chr6g0290901 RchiOBHm_Chr7g0201691
rosa_laevigata RLG00000003529 RLG00000009370 RLG00000013568
rosa_multiflora Rmu_co8437743.1_g000001 Rmu_sc0000063.1_g000028 Rmu_sc0000098.1_g000004 Rmu_sc0000166.1_g000028 Rmu_sc0000258.1_g000102 Rmu_sc0000288.1_g000018 Rmu_sc0000333.1_g000043 Rmu_sc0000451.1_g000011 Rmu_sc0000455.1_g000003 Rmu_sc0000479.1_g000002 Rmu_sc0000687.1_g000014 Rmu_sc0000733.1_g000024 Rmu_sc0000736.1_g000001 Rmu_sc0000745.1_g000017 Rmu_sc0000760.1_g000031 Rmu_sc0000776.1_g000044 Rmu_sc0000828.1_g000011 Rmu_sc0000830.1_g000027 Rmu_sc0000857.1_g000025 Rmu_sc0000864.1_g000013 Rmu_sc0001016.1_g000034 Rmu_sc0001016.1_g000035 Rmu_sc0001036.1_g000015 Rmu_sc0001096.1_g000020 Rmu_sc0001145.1_g000023 Rmu_sc0001167.1_g000057 Rmu_sc0001173.1_g000030 Rmu_sc0001260.1_g000006 Rmu_sc0001266.1_g000016 Rmu_sc0001346.1_g000003 Rmu_sc0001346.1_g000004 Rmu_sc0001386.1_g000005 Rmu_sc0001501.1_g000057 Rmu_sc0001565.1_g000058 Rmu_sc0001634.1_g000047 Rmu_sc0001699.1_g000018 Rmu_sc0001700.1_g000041 Rmu_sc0001700.1_g000055 Rmu_sc0001725.1_g000005 Rmu_sc0001823.1_g000005 Rmu_sc0001877.1_g000014 Rmu_sc0001942.1_g000059 Rmu_sc0001966.1_g000033 Rmu_sc0001998.1_g000009 Rmu_sc0002011.1_g000030 Rmu_sc0002147.1_g000007 Rmu_sc0002176.1_g000005 Rmu_sc0002235.1_g000097 Rmu_sc0002324.1_g000002 Rmu_sc0002352.1_g000011 Rmu_sc0002365.1_g000022 Rmu_sc0002548.1_g000007 Rmu_sc0002890.1_g000008 Rmu_sc0002936.1_g000003 Rmu_sc0002955.1_g000016 Rmu_sc0003160.1_g000032 Rmu_sc0003452.1_g000010 Rmu_sc0003490.1_g000023 Rmu_sc0003541.1_g000014 Rmu_sc0003555.1_g000014 Rmu_sc0003759.1_g000008 Rmu_sc0003843.1_g000001 Rmu_sc0003846.1_g000005 Rmu_sc0003890.1_g000019 Rmu_sc0003953.1_g000016 Rmu_sc0003967.1_g000001 Rmu_sc0004068.1_g000002 Rmu_sc0004101.1_g000004 Rmu_sc0004298.1_g000010 Rmu_sc0004507.1_g000008 Rmu_sc0004649.1_g000015 Rmu_sc0004719.1_g000006 Rmu_sc0004751.1_g000012 Rmu_sc0004821.1_g000005 Rmu_sc0004868.1_g000003 Rmu_sc0004876.1_g000023 Rmu_sc0004932.1_g000020 Rmu_sc0005093.1_g000020 Rmu_sc0005132.1_g000019 Rmu_sc0005274.1_g000001 Rmu_sc0005381.1_g000013 Rmu_sc0005693.1_g000009 Rmu_sc0005708.1_g000011 Rmu_sc0005834.1_g000016 Rmu_sc0005966.1_g000017 Rmu_sc0006173.1_g000033 Rmu_sc0006175.1_g000012 Rmu_sc0006590.1_g000004 Rmu_sc0006695.1_g000044 Rmu_sc0007061.1_g000002 Rmu_sc0007069.1_g000023 Rmu_sc0007216.1_g000006 Rmu_sc0008124.1_g000026 Rmu_sc0008148.1_g000028 Rmu_sc0008198.1_g000004 Rmu_sc0008423.1_g000003 Rmu_sc0008441.1_g000011 Rmu_sc0008707.1_g000005 Rmu_sc0009101.1_g000008 Rmu_sc0009240.1_g000039 Rmu_sc0009414.1_g000002 Rmu_sc0009628.1_g000001 Rmu_sc0010048.1_g000007 Rmu_sc0010275.1_g000001 Rmu_sc0010338.1_g000004 Rmu_sc0010659.1_g000005 Rmu_sc0010691.1_g000001 Rmu_sc0011023.1_g000006 Rmu_sc0011533.1_g000001 Rmu_sc0011901.1_g000001 Rmu_sc0012746.1_g000042 Rmu_sc0012773.1_g000005 Rmu_sc0012952.1_g000005 Rmu_sc0014568.1_g000002 Rmu_sc0014568.1_g000003 Rmu_sc0015188.1_g000004 Rmu_sc0019714.1_g000001 Rmu_sc0020148.1_g000003 Rmu_sc0020260.1_g000003 Rmu_sc0021213.1_g000002 Rmu_sc0022616.1_g000001 Rmu_ssc0000084.1_g000006 Rmu_ssc0000116.1_g000017 Rmu_ssc0000116.1_g000018 Rmu_ssc0000189.1_g000037 Rmu_ssc0000330.1_g000009 Rmu_ssc0000359.1_g000004 Rmu_ssc0000366.1_g000031 Rmu_ssc0000386.1_g000056 Rmu_ssc0000387.1_g000006 Rmu_ssc0000400.1_g000065 Rmu_ssc0000440.1_g000006 Rmu_ssc0000452.1_g000014
rosa_roxburghii Rroxscaffold_1G00020180 Rroxscaffold_2G00089580 Rroxscaffold_2G00143500 Rroxscaffold_3G00264360 Rroxscaffold_4G00316450 Rroxscaffold_4G00327050 Rroxscaffold_5G00350260 Rroxscaffold_5G00351750 Rroxscaffold_5G00364680 Rroxscaffold_5G00376220 Rroxscaffold_6G00391720
rosa_rugosa Rorug04G0096700 Rorug05G0284300 Rorug06G0059800 Rorug06G0059900 Rorug06G0060000 Rorug06G0060100 Rorug06G0060200 Rorug06G0127700 Rorug06G0243400
rosa_samantha Rh1AG033000 Rh1AG274600 Rh1DG069700 Rh2DG069900 Rh2DG210700 Rh2DG560100 Rh3AG245500 Rh3BG095400 Rh4AG018100 Rh4AG084900 Rh4AG177900 Rh4CG092300 Rh4CG194700 Rh5BG350600 Rh6BG362400 Rh7DG198200 Rh7DG403500
rosa_wichuraiana Rw1G008260 Rw1G035940 Rw2G027180 Rw4G003470 Rw4G010610 Rw5G037240 Rw6G036490 Rw7G015690 Rw7G028950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 446
Acc16I TGCGCA 1 cut(s) 392
Acc36I ACCTGC 1 cut(s) 446
AccBSI CCGCTC 1 cut(s) 249
AccIII TCCGGA 1 cut(s) 356
AciI CCGC 2 cut(s) 249, 842
AclWI GGATC 1 cut(s) 464
AcoI YGGCCR 2 cut(s) 3, 30
AcsI RAATTY 3 cut(s) 183, 412, 626
AfiI CCNNNNNNNGG 3 cut(s) 12, 32, 592
AflIII ACRYGT 1 cut(s) 20
AgsI TTSAA 4 cut(s) 107, 190, 197, 710
AjiI CACGTC 1 cut(s) 23
AluBI AGCT 1 cut(s) 294
AluI AGCT 1 cut(s) 294
Alw26I GTCTC 2 cut(s) 569, 644
AlwI GGATC 1 cut(s) 464
Ama87I CYCGRG 1 cut(s) 566
Aor13HI TCCGGA 1 cut(s) 356
AoxI GGCC 4 cut(s) 3, 30, 140, 482
ApeKI GCWGC 1 cut(s) 533
ApoI RAATTY 3 cut(s) 183, 412, 626
Asp700I GAANNNNTTC 1 cut(s) 102
AspLEI GCGC 1 cut(s) 393
AspS9I GGNCC 1 cut(s) 141
AsuHPI GGTGA 1 cut(s) 470
AsuII TTCGAA 1 cut(s) 254
AvaI CYCGRG 1 cut(s) 566
BaeGI GKGCMC 1 cut(s) 20
BbvI GCAGC 1 cut(s) 545
BccI CCATC 2 cut(s) 78, 428
BciVI GTATCC 1 cut(s) 677
BcoDI GTCTC 2 cut(s) 569, 644
BfaI CTAG 1 cut(s) 345
BfmI CTRYAG 1 cut(s) 465
BfuAI ACCTGC 1 cut(s) 446
BfuI GTATCC 1 cut(s) 677
BisI GCNGC 1 cut(s) 534
BlsI GCNGC 1 cut(s) 535
BmeT110I CYCGRG 1 cut(s) 566
BmgBI CACGTC 1 cut(s) 23
BmgT120I GGNCC 1 cut(s) 141
BmsI GCATC 1 cut(s) 140
Bpu14I TTCGAA 1 cut(s) 254
BpuEI CTTGAG 1 cut(s) 471
BsaJI CCNNGG 1 cut(s) 600
BsaWI WCCGGW 1 cut(s) 356
Bsc4I CCNNNNNNNGG 3 cut(s) 12, 32, 592
Bse1I ACTGG 1 cut(s) 26
BseAI TCCGGA 1 cut(s) 356
BseDI CCNNGG 1 cut(s) 600
BseGI GGATG 3 cut(s) 339, 353, 442
BseLI CCNNNNNNNGG 3 cut(s) 12, 32, 592
BseNI ACTGG 1 cut(s) 26
BseSI GKGCMC 1 cut(s) 20
BseXI GCAGC 1 cut(s) 545
BshFI GGCC 4 cut(s) 5, 32, 142, 484
BsiHKCI CYCGRG 1 cut(s) 566
BsiSI CCGG 2 cut(s) 33, 357
BslI CCNNNNNNNGG 3 cut(s) 12, 32, 592
BsmAI GTCTC 2 cut(s) 569, 644
BsmI GAATGC 1 cut(s) 262
BsnI GGCC 4 cut(s) 5, 32, 142, 484
BsoBI CYCGRG 1 cut(s) 566
Bsp119I TTCGAA 1 cut(s) 254
Bsp1286I GDGCHC 1 cut(s) 20
Bsp13I TCCGGA 1 cut(s) 356
Bsp143I GATC 5 cut(s) 46, 152, 469, 541, 721
BspACI CCGC 2 cut(s) 249, 842
BspANI GGCC 4 cut(s) 5, 32, 142, 484
BspEI TCCGGA 1 cut(s) 356
BspMAI CTGCAG 1 cut(s) 469
BspMI ACCTGC 1 cut(s) 446
BspPI GGATC 1 cut(s) 464
BspQI GCTCTTC 2 cut(s) 735, 756
BspT104I TTCGAA 1 cut(s) 254
BsrBI CCGCTC 1 cut(s) 249
BsrI ACTGG 1 cut(s) 26
BssECI CCNNGG 1 cut(s) 600
BssMI GATC 5 cut(s) 46, 152, 469, 541, 721
BssT1I CCWWGG 1 cut(s) 600
Bst6I CTCTTC 3 cut(s) 645, 735, 756
BstBI TTCGAA 1 cut(s) 254
BstC8I GCNNGC 1 cut(s) 228
BstDEI CTNAG 1 cut(s) 427
BstEII GGTNACC 1 cut(s) 64
BstF5I GGATG 3 cut(s) 339, 353, 442
BstHHI GCGC 1 cut(s) 393
BstKTI GATC 5 cut(s) 49, 155, 472, 544, 724
BstMAI GTCTC 2 cut(s) 569, 644
BstMBI GATC 5 cut(s) 46, 152, 469, 541, 721
BstNSI RCATGY 1 cut(s) 666
BstPI GGTNACC 1 cut(s) 64
BstSFI CTRYAG 1 cut(s) 465
BstSLI GKGCMC 1 cut(s) 20
BstV1I GCAGC 1 cut(s) 545
BstX2I RGATCY 1 cut(s) 469
BstYI RGATCY 1 cut(s) 469
BsuI GTATCC 1 cut(s) 677
BsuRI GGCC 4 cut(s) 5, 32, 142, 484
BtrI CACGTC 1 cut(s) 23
BtsCI GGATG 3 cut(s) 339, 353, 442
BtsIMutI CAGTG 1 cut(s) 33
BveI ACCTGC 1 cut(s) 446
Cac8I GCNNGC 1 cut(s) 228
CfoI GCGC 1 cut(s) 393
Cfr13I GGNCC 1 cut(s) 141
CviAII CATG 2 cut(s) 433, 663
DdeI CTNAG 1 cut(s) 427
DpnI GATC 5 cut(s) 48, 154, 471, 543, 723
DpnII GATC 5 cut(s) 46, 152, 469, 541, 721
DraI TTTAAA 1 cut(s) 334
EaeI YGGCCR 2 cut(s) 3, 30
Eam1104I CTCTTC 3 cut(s) 645, 735, 756
EarI CTCTTC 3 cut(s) 645, 735, 756
Eco130I CCWWGG 1 cut(s) 600
Eco147I AGGCCT 1 cut(s) 484
Eco88I CYCGRG 1 cut(s) 566
Eco91I GGTNACC 1 cut(s) 64
EcoO65I GGTNACC 1 cut(s) 64
EcoRI GAATTC 1 cut(s) 626
EcoT14I CCWWGG 1 cut(s) 600
ErhI CCWWGG 1 cut(s) 600
FaeI CATG 2 cut(s) 436, 666
FaiI YATR 7 cut(s) 351, 387, 389, 434, 575, 664, 773
FatI CATG 2 cut(s) 432, 662
FauNDI CATATG 1 cut(s) 387
Fnu4HI GCNGC 1 cut(s) 534
FokI GGATG 3 cut(s) 326, 340, 449
Fsp4HI GCNGC 1 cut(s) 534
FspAI RTGCGCAY 1 cut(s) 392
FspBI CTAG 1 cut(s) 345
FspI TGCGCA 1 cut(s) 392
GlaI GCGC 1 cut(s) 392
GluI GCNGC 1 cut(s) 534
HaeIII GGCC 4 cut(s) 5, 32, 142, 484
HapII CCGG 2 cut(s) 33, 357
HhaI GCGC 1 cut(s) 393
Hin1II CATG 2 cut(s) 436, 666
Hin6I GCGC 1 cut(s) 391
HinP1I GCGC 1 cut(s) 391
HinfI GANTC 1 cut(s) 161
HpaII CCGG 2 cut(s) 33, 357
HphI GGTGA 1 cut(s) 470
Hpy188I TCNGA 1 cut(s) 291
Hpy188III TCNNGA 4 cut(s) 357, 566, 568, 710
HpyAV CCTTC 6 cut(s) 168, 184, 368, 486, 490, 523
HpyCH4IV ACGT 1 cut(s) 22
HpyCH4V TGCA 8 cut(s) 114, 131, 169, 218, 326, 455, 467, 676
HpyF3I CTNAG 1 cut(s) 427
HpySE526I ACGT 1 cut(s) 22
Hsp92II CATG 2 cut(s) 436, 666
HspAI GCGC 1 cut(s) 391
Kpn2I TCCGGA 1 cut(s) 356
Kzo9I GATC 5 cut(s) 46, 152, 469, 541, 721
LguI GCTCTTC 2 cut(s) 735, 756
LpnPI CCDG 5 cut(s) 39, 46, 155, 370, 441
Lsp1109I GCAGC 1 cut(s) 545
LweI GCATC 1 cut(s) 140
MaeI CTAG 1 cut(s) 345
MaeII ACGT 1 cut(s) 22
MaeIII GTNAC 2 cut(s) 64, 302
MalI GATC 5 cut(s) 48, 154, 471, 543, 723
MbiI CCGCTC 1 cut(s) 249
MboI GATC 5 cut(s) 46, 152, 469, 541, 721
MboII GAAGA 7 cut(s) 68, 93, 110, 662, 752, 773, 847
MfeI CAATTG 2 cut(s) 107, 402
MflI RGATCY 1 cut(s) 469
MhlI GDGCHC 1 cut(s) 20
MroI TCCGGA 1 cut(s) 356
MroXI GAANNNNTTC 1 cut(s) 102
MseI TTAA 5 cut(s) 221, 264, 297, 333, 729
MspI CCGG 2 cut(s) 33, 357
MunI CAATTG 2 cut(s) 107, 402
Mva1269I GAATGC 1 cut(s) 262
NdeI CATATG 1 cut(s) 387
NdeII GATC 5 cut(s) 46, 152, 469, 541, 721
NlaIII CATG 2 cut(s) 436, 666
NsbI TGCGCA 1 cut(s) 392
NspI RCATGY 1 cut(s) 666
NspV TTCGAA 1 cut(s) 254
PaeR7I CTCGAG 1 cut(s) 566
PaqCI CACCTGC 1 cut(s) 446
PceI AGGCCT 1 cut(s) 484
PciSI GCTCTTC 2 cut(s) 735, 756
PctI GAATGC 1 cut(s) 262
PdmI GAANNNNTTC 1 cut(s) 102
PfeI GAWTC 1 cut(s) 161
PkrI GCNGC 1 cut(s) 535
PspEI GGTNACC 1 cut(s) 64
PspPI GGNCC 1 cut(s) 141
PstI CTGCAG 1 cut(s) 469
PsuI RGATCY 1 cut(s) 469
SapI GCTCTTC 2 cut(s) 735, 756
SaqAI TTAA 5 cut(s) 221, 264, 297, 333, 729
SatI GCNGC 1 cut(s) 534
Sau3AI GATC 5 cut(s) 46, 152, 469, 541, 721
Sau96I GGNCC 1 cut(s) 141
SduI GDGCHC 1 cut(s) 20
SetI ASST 7 cut(s) 25, 66, 179, 195, 296, 450, 460
SfaNI GCATC 1 cut(s) 140
SfcI CTRYAG 1 cut(s) 465
Sfr274I CTCGAG 1 cut(s) 566
SfuI TTCGAA 1 cut(s) 254
SlaI CTCGAG 1 cut(s) 566
SmlI CTYRAG 2 cut(s) 486, 566
SmoI CTYRAG 2 cut(s) 486, 566
SseBI AGGCCT 1 cut(s) 484
SsiI CCGC 2 cut(s) 249, 842
SspMI CTAG 1 cut(s) 345
StuI AGGCCT 1 cut(s) 484
StyI CCWWGG 1 cut(s) 600
TaiI ACGT 1 cut(s) 25
TaqI TCGA 6 cut(s) 254, 567, 618, 634, 681, 724
TfiI GAWTC 1 cut(s) 161
Tru1I TTAA 5 cut(s) 221, 264, 297, 333, 729
Tru9I TTAA 5 cut(s) 221, 264, 297, 333, 729
TscAI CASTG 1 cut(s) 33
TseI GCWGC 1 cut(s) 533
TspDTI ATGAA 2 cut(s) 69, 387
TspGWI ACGGA 1 cut(s) 532
TspRI CASTG 1 cut(s) 33
XapI RAATTY 3 cut(s) 183, 412, 626
XceI RCATGY 1 cut(s) 666
XhoI CTCGAG 1 cut(s) 566
XmnI GAANNNNTTC 1 cut(s) 102
XspI CTAG 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.