Rmu_sc0001167.1_g000057

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001167.1
OG0000127
Physical Location & Seq
Reverse (-)
220243 .. 221877
1635 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001167.1_g000057.1.cds

Sequence Viewer

Length: 612 bp
atggccgagcaaaggggaaacagacgtccagtggccggacaagaggaaaatcaaagtgaagatgataataccgaagagaaaaggagatggacggatgaggaagatgttcaattgtgcaagtcttggaaagctggaaggtggaaaattttgaaggttgaactctttgagtggcattgtgcattaaggcaagcgaaaaattggtacaagagcggttcgaatgcggttaatgagcatgccgggatgaagagaaaagggaggaccaaaagacacctgtttcagagttttgatagttacgctgctgtggagggctttgcacaatttaaagacatccctagccatacatccggaagaacatcaaatgaaggaagtcaacatacgcacacacaaccaattgctgaaaattctcccatcaacttggatatggatgtagataaggtaattgcaggtgaaactgcagatcctaatgtgaggcctcaaggaaggaaggatgctaaagaagcaatttcagaaaggaaagaaggcagcgaaagatcaaagtcctctgtcaagcacactcgagaatatagcgaacaaccaaatagaggcaaccacaggcaagaaaaaactcgatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

203

Amino Acids

23.39

Weight (kDa)

9.02

Isoelectric Point (pI)

55.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000127)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02381 FvH4_1g19463 FvH4_1g28433 FvH4_2g16143 FvH4_2g18491 FvH4_2g27711 FvH4_3g19631 FvH4_3g23573 FvH4_4g35743 FvH4_5g23701 FvH4_6g19603 FvH4_6g39781 FvH4_6g40561 FvH4_7g02563 FvH4_7g11472 FvH4_7g17530
rosa_chinensis RchiOBHm_Chr1g0315991 RchiOBHm_Chr1g0318371 RchiOBHm_Chr1g0328341 RchiOBHm_Chr1g0331431 RchiOBHm_Chr1g0344801 RchiOBHm_Chr1g0371461 RchiOBHm_Chr1g0379261 RchiOBHm_Chr2g0117661 RchiOBHm_Chr5g0011791 RchiOBHm_Chr5g0020991 RchiOBHm_Chr5g0060631 RchiOBHm_Chr5g0064181 RchiOBHm_Chr5g0080181 RchiOBHm_Chr6g0254691 RchiOBHm_Chr6g0260101 RchiOBHm_Chr6g0290901 RchiOBHm_Chr7g0201691
rosa_laevigata RLG00000003529 RLG00000009370 RLG00000013568
rosa_multiflora Rmu_co8437743.1_g000001 Rmu_sc0000063.1_g000028 Rmu_sc0000098.1_g000004 Rmu_sc0000166.1_g000028 Rmu_sc0000258.1_g000102 Rmu_sc0000288.1_g000018 Rmu_sc0000333.1_g000043 Rmu_sc0000451.1_g000011 Rmu_sc0000455.1_g000003 Rmu_sc0000479.1_g000002 Rmu_sc0000687.1_g000014 Rmu_sc0000733.1_g000024 Rmu_sc0000736.1_g000001 Rmu_sc0000745.1_g000017 Rmu_sc0000760.1_g000031 Rmu_sc0000776.1_g000044 Rmu_sc0000828.1_g000011 Rmu_sc0000830.1_g000027 Rmu_sc0000857.1_g000025 Rmu_sc0000864.1_g000013 Rmu_sc0001016.1_g000034 Rmu_sc0001016.1_g000035 Rmu_sc0001036.1_g000015 Rmu_sc0001096.1_g000020 Rmu_sc0001145.1_g000023 Rmu_sc0001167.1_g000057 Rmu_sc0001173.1_g000030 Rmu_sc0001260.1_g000006 Rmu_sc0001266.1_g000016 Rmu_sc0001346.1_g000003 Rmu_sc0001346.1_g000004 Rmu_sc0001386.1_g000005 Rmu_sc0001501.1_g000057 Rmu_sc0001565.1_g000058 Rmu_sc0001634.1_g000047 Rmu_sc0001699.1_g000018 Rmu_sc0001700.1_g000041 Rmu_sc0001700.1_g000055 Rmu_sc0001725.1_g000005 Rmu_sc0001823.1_g000005 Rmu_sc0001877.1_g000014 Rmu_sc0001942.1_g000059 Rmu_sc0001966.1_g000033 Rmu_sc0001998.1_g000009 Rmu_sc0002011.1_g000030 Rmu_sc0002147.1_g000007 Rmu_sc0002176.1_g000005 Rmu_sc0002235.1_g000097 Rmu_sc0002324.1_g000002 Rmu_sc0002352.1_g000011 Rmu_sc0002365.1_g000022 Rmu_sc0002548.1_g000007 Rmu_sc0002890.1_g000008 Rmu_sc0002936.1_g000003 Rmu_sc0002955.1_g000016 Rmu_sc0003160.1_g000032 Rmu_sc0003452.1_g000010 Rmu_sc0003490.1_g000023 Rmu_sc0003541.1_g000014 Rmu_sc0003555.1_g000014 Rmu_sc0003759.1_g000008 Rmu_sc0003843.1_g000001 Rmu_sc0003846.1_g000005 Rmu_sc0003890.1_g000019 Rmu_sc0003953.1_g000016 Rmu_sc0003967.1_g000001 Rmu_sc0004068.1_g000002 Rmu_sc0004101.1_g000004 Rmu_sc0004298.1_g000010 Rmu_sc0004507.1_g000008 Rmu_sc0004649.1_g000015 Rmu_sc0004719.1_g000006 Rmu_sc0004751.1_g000012 Rmu_sc0004821.1_g000005 Rmu_sc0004868.1_g000003 Rmu_sc0004876.1_g000023 Rmu_sc0004932.1_g000020 Rmu_sc0005093.1_g000020 Rmu_sc0005132.1_g000019 Rmu_sc0005274.1_g000001 Rmu_sc0005381.1_g000013 Rmu_sc0005693.1_g000009 Rmu_sc0005708.1_g000011 Rmu_sc0005834.1_g000016 Rmu_sc0005966.1_g000017 Rmu_sc0006173.1_g000033 Rmu_sc0006175.1_g000012 Rmu_sc0006590.1_g000004 Rmu_sc0006695.1_g000044 Rmu_sc0007061.1_g000002 Rmu_sc0007069.1_g000023 Rmu_sc0007216.1_g000006 Rmu_sc0008124.1_g000026 Rmu_sc0008148.1_g000028 Rmu_sc0008198.1_g000004 Rmu_sc0008423.1_g000003 Rmu_sc0008441.1_g000011 Rmu_sc0008707.1_g000005 Rmu_sc0009101.1_g000008 Rmu_sc0009240.1_g000039 Rmu_sc0009414.1_g000002 Rmu_sc0009628.1_g000001 Rmu_sc0010048.1_g000007 Rmu_sc0010275.1_g000001 Rmu_sc0010338.1_g000004 Rmu_sc0010659.1_g000005 Rmu_sc0010691.1_g000001 Rmu_sc0011023.1_g000006 Rmu_sc0011533.1_g000001 Rmu_sc0011901.1_g000001 Rmu_sc0012746.1_g000042 Rmu_sc0012773.1_g000005 Rmu_sc0012952.1_g000005 Rmu_sc0014568.1_g000002 Rmu_sc0014568.1_g000003 Rmu_sc0015188.1_g000004 Rmu_sc0019714.1_g000001 Rmu_sc0020148.1_g000003 Rmu_sc0020260.1_g000003 Rmu_sc0021213.1_g000002 Rmu_sc0022616.1_g000001 Rmu_ssc0000084.1_g000006 Rmu_ssc0000116.1_g000017 Rmu_ssc0000116.1_g000018 Rmu_ssc0000189.1_g000037 Rmu_ssc0000330.1_g000009 Rmu_ssc0000359.1_g000004 Rmu_ssc0000366.1_g000031 Rmu_ssc0000386.1_g000056 Rmu_ssc0000387.1_g000006 Rmu_ssc0000400.1_g000065 Rmu_ssc0000440.1_g000006 Rmu_ssc0000452.1_g000014
rosa_roxburghii Rroxscaffold_1G00020180 Rroxscaffold_2G00089580 Rroxscaffold_2G00143500 Rroxscaffold_3G00264360 Rroxscaffold_4G00316450 Rroxscaffold_4G00327050 Rroxscaffold_5G00350260 Rroxscaffold_5G00351750 Rroxscaffold_5G00364680 Rroxscaffold_5G00376220 Rroxscaffold_6G00391720
rosa_rugosa Rorug04G0096700 Rorug05G0284300 Rorug06G0059800 Rorug06G0059900 Rorug06G0060000 Rorug06G0060100 Rorug06G0060200 Rorug06G0127700 Rorug06G0243400
rosa_samantha Rh1AG033000 Rh1AG274600 Rh1DG069700 Rh2DG069900 Rh2DG210700 Rh2DG560100 Rh3AG245500 Rh3BG095400 Rh4AG018100 Rh4AG084900 Rh4AG177900 Rh4CG092300 Rh4CG194700 Rh5BG350600 Rh6BG362400 Rh7DG198200 Rh7DG403500
rosa_wichuraiana Rw1G008260 Rw1G035940 Rw2G027180 Rw4G003470 Rw4G010610 Rw5G037240 Rw6G036490 Rw7G015690 Rw7G028950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 434
AatII GACGTC 1 cut(s) 28
Acc36I ACCTGC 1 cut(s) 434
AccBSI CCGCTC 1 cut(s) 210
AccIII TCCGGA 1 cut(s) 344
AciI CCGC 2 cut(s) 210, 221
AclWI GGATC 1 cut(s) 452
AcoI YGGCCR 2 cut(s) 3, 33
AcsI RAATTY 2 cut(s) 144, 400
AcyI GRCGYC 1 cut(s) 25
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 3 cut(s) 12, 35, 581
AgsI TTSAA 3 cut(s) 110, 151, 158
AluBI AGCT 1 cut(s) 131
AluI AGCT 1 cut(s) 131
AlwI GGATC 1 cut(s) 452
Ama87I CYCGRG 1 cut(s) 555
Aor13HI TCCGGA 1 cut(s) 344
AoxI GGCC 3 cut(s) 3, 33, 470
ApeKI GCWGC 2 cut(s) 296, 522
ApoI RAATTY 2 cut(s) 144, 400
Asp700I GAANNNNTTC 1 cut(s) 105
AspS9I GGNCC 1 cut(s) 258
AsuC2I CCSGG 1 cut(s) 238
AsuHPI GGTGA 1 cut(s) 458
AsuII TTCGAA 1 cut(s) 215
AvaI CYCGRG 1 cut(s) 555
AvaII GGWCC 1 cut(s) 258
BarI GAAGNNNNNNTAC 2 cut(s) 358, 390
BbvI GCAGC 2 cut(s) 283, 534
BccI CCATC 2 cut(s) 81, 416
BcnI CCSGG 1 cut(s) 238
BfaI CTAG 1 cut(s) 333
BfmI CTRYAG 1 cut(s) 453
BfuAI ACCTGC 1 cut(s) 434
BisI GCNGC 2 cut(s) 297, 523
BlsI GCNGC 2 cut(s) 298, 524
Bme1390I CCNGG 1 cut(s) 238
Bme18I GGWCC 1 cut(s) 258
BmeT110I CYCGRG 1 cut(s) 555
BmgT120I GGNCC 1 cut(s) 258
BmrFI CCNGG 1 cut(s) 238
BmsI GCATC 1 cut(s) 478
Bpu14I TTCGAA 1 cut(s) 215
BpuEI CTTGAG 1 cut(s) 459
BpuMI CCSGG 1 cut(s) 238
BsaHI GRCGYC 1 cut(s) 25
BsaWI WCCGGW 1 cut(s) 344
Bsc4I CCNNNNNNNGG 3 cut(s) 12, 35, 581
Bse1I ACTGG 1 cut(s) 29
BseAI TCCGGA 1 cut(s) 344
BseGI GGATG 6 cut(s) 100, 246, 327, 341, 430, 493
BseLI CCNNNNNNNGG 3 cut(s) 12, 35, 581
BseNI ACTGG 1 cut(s) 29
BseXI GCAGC 2 cut(s) 283, 534
BshFI GGCC 3 cut(s) 5, 35, 472
BsiHKCI CYCGRG 1 cut(s) 555
BsiSI CCGG 3 cut(s) 36, 237, 345
BslI CCNNNNNNNGG 3 cut(s) 12, 35, 581
BsmI GAATGC 1 cut(s) 223
BsnI GGCC 3 cut(s) 5, 35, 472
BsoBI CYCGRG 1 cut(s) 555
Bsp119I TTCGAA 1 cut(s) 215
Bsp13I TCCGGA 1 cut(s) 344
Bsp143I GATC 2 cut(s) 457, 530
BspACI CCGC 2 cut(s) 210, 221
BspANI GGCC 3 cut(s) 5, 35, 472
BspEI TCCGGA 1 cut(s) 344
BspMAI CTGCAG 1 cut(s) 457
BspMI ACCTGC 1 cut(s) 434
BspPI GGATC 1 cut(s) 452
BspT104I TTCGAA 1 cut(s) 215
BsrBI CCGCTC 1 cut(s) 210
BsrI ACTGG 1 cut(s) 29
BssMI GATC 2 cut(s) 457, 530
BssNI GRCGYC 1 cut(s) 25
Bst6I CTCTTC 2 cut(s) 69, 239
BstACI GRCGYC 1 cut(s) 25
BstBI TTCGAA 1 cut(s) 215
BstC8I GCNNGC 2 cut(s) 189, 234
BstF5I GGATG 6 cut(s) 100, 246, 327, 341, 430, 493
BstKTI GATC 2 cut(s) 460, 533
BstMBI GATC 2 cut(s) 457, 530
BstMWI GCNNNNNNNGC 1 cut(s) 497
BstNSI RCATGY 1 cut(s) 236
BstSCI CCNGG 1 cut(s) 236
BstSFI CTRYAG 1 cut(s) 453
BstV1I GCAGC 2 cut(s) 283, 534
BstX2I RGATCY 1 cut(s) 457
BstXI CCANNNNNNTGG 1 cut(s) 415
BstYI RGATCY 1 cut(s) 457
BsuRI GGCC 3 cut(s) 5, 35, 472
BtsCI GGATG 6 cut(s) 100, 246, 327, 341, 430, 493
BtsIMutI CAGTG 1 cut(s) 36
BveI ACCTGC 1 cut(s) 434
Cac8I GCNNGC 2 cut(s) 189, 234
Cfr13I GGNCC 1 cut(s) 258
Csp6I GTAC 1 cut(s) 202
CviAII CATG 1 cut(s) 233
CviJI RGCY 6 cut(s) 5, 35, 131, 309, 336, 472
CviKI_1 RGCY 6 cut(s) 5, 35, 131, 309, 336, 472
CviQI GTAC 1 cut(s) 202
DpnI GATC 2 cut(s) 459, 532
DpnII GATC 2 cut(s) 457, 530
DraI TTTAAA 1 cut(s) 322
EaeI YGGCCR 2 cut(s) 3, 33
Eam1104I CTCTTC 2 cut(s) 69, 239
EarI CTCTTC 2 cut(s) 69, 239
Eco147I AGGCCT 1 cut(s) 472
Eco47I GGWCC 1 cut(s) 258
Eco88I CYCGRG 1 cut(s) 555
FaeI CATG 1 cut(s) 236
FaiI YATR 5 cut(s) 234, 339, 375, 422, 564
FatI CATG 1 cut(s) 232
Fnu4HI GCNGC 2 cut(s) 297, 523
FokI GGATG 6 cut(s) 107, 253, 314, 328, 437, 500
Fsp4HI GCNGC 2 cut(s) 297, 523
FspBI CTAG 1 cut(s) 333
GluI GCNGC 2 cut(s) 297, 523
HaeIII GGCC 3 cut(s) 5, 35, 472
HapII CCGG 3 cut(s) 36, 237, 345
Hin1I GRCGYC 1 cut(s) 25
Hin1II CATG 1 cut(s) 236
HincII GTYRAC 1 cut(s) 371
HindII GTYRAC 1 cut(s) 371
HpaII CCGG 3 cut(s) 36, 237, 345
HphI GGTGA 1 cut(s) 458
Hpy166II GTNNAC 1 cut(s) 371
Hpy188I TCNGA 2 cut(s) 279, 508
Hpy188III TCNNGA 2 cut(s) 345, 557
Hpy8I GTNNAC 1 cut(s) 371
HpyAV CCTTC 6 cut(s) 129, 145, 356, 474, 478, 512
HpyCH4IV ACGT 1 cut(s) 25
HpyCH4V TGCA 5 cut(s) 117, 179, 314, 443, 455
HpyF10VI GCNNNNNNNGC 1 cut(s) 497
HpySE526I ACGT 1 cut(s) 25
Hsp92I GRCGYC 1 cut(s) 25
Hsp92II CATG 1 cut(s) 236
Kpn2I TCCGGA 1 cut(s) 344
Kzo9I GATC 2 cut(s) 457, 530
LpnPI CCDG 8 cut(s) 42, 49, 117, 250, 284, 358, 429, 577
Lsp1109I GCAGC 2 cut(s) 283, 534
LweI GCATC 1 cut(s) 478
MaeI CTAG 1 cut(s) 333
MaeII ACGT 1 cut(s) 25
MaeIII GTNAC 1 cut(s) 290
MalI GATC 2 cut(s) 459, 532
MbiI CCGCTC 1 cut(s) 210
MboI GATC 2 cut(s) 457, 530
MboII GAAGA 5 cut(s) 71, 86, 113, 256, 360
MfeI CAATTG 2 cut(s) 110, 390
MflI RGATCY 1 cut(s) 457
MluCI AATT 8 cut(s) 110, 144, 196, 317, 390, 400, 438, 501
MnlI CCTC 8 cut(s) 37, 91, 249, 298, 462, 483, 550, 575
MroI TCCGGA 1 cut(s) 344
MroXI GAANNNNTTC 1 cut(s) 105
MseI TTAA 3 cut(s) 182, 225, 321
MspI CCGG 3 cut(s) 36, 237, 345
MspR9I CCNGG 1 cut(s) 238
MunI CAATTG 2 cut(s) 110, 390
Mva1269I GAATGC 1 cut(s) 223
MwoI GCNNNNNNNGC 1 cut(s) 497
NciI CCSGG 1 cut(s) 238
NdeII GATC 2 cut(s) 457, 530
NlaIII CATG 1 cut(s) 236
NmeAIII GCCGAG 1 cut(s) 31
NspI RCATGY 1 cut(s) 236
NspV TTCGAA 1 cut(s) 215
PaeI GCATGC 1 cut(s) 236
PaeR7I CTCGAG 1 cut(s) 555
PaqCI CACCTGC 1 cut(s) 434
PceI AGGCCT 1 cut(s) 472
PctI GAATGC 1 cut(s) 223
PdmI GAANNNNTTC 1 cut(s) 105
PkrI GCNGC 2 cut(s) 298, 524
PspPI GGNCC 1 cut(s) 258
PstI CTGCAG 1 cut(s) 457
PsuI RGATCY 1 cut(s) 457
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
SaqAI TTAA 3 cut(s) 182, 225, 321
SatI GCNGC 2 cut(s) 297, 523
Sau3AI GATC 2 cut(s) 457, 530
Sau96I GGNCC 1 cut(s) 258
ScrFI CCNGG 1 cut(s) 238
SetI ASST 7 cut(s) 28, 133, 140, 156, 273, 438, 448
SfaNI GCATC 1 cut(s) 478
SfcI CTRYAG 1 cut(s) 453
Sfr274I CTCGAG 1 cut(s) 555
SfuI TTCGAA 1 cut(s) 215
SinI GGWCC 1 cut(s) 258
SlaI CTCGAG 1 cut(s) 555
SmlI CTYRAG 2 cut(s) 474, 555
SmoI CTYRAG 2 cut(s) 474, 555
SphI GCATGC 1 cut(s) 236
Sse9I AATT 8 cut(s) 110, 144, 196, 317, 390, 400, 438, 501
SseBI AGGCCT 1 cut(s) 472
SsiI CCGC 2 cut(s) 210, 221
SspMI CTAG 1 cut(s) 333
StuI AGGCCT 1 cut(s) 472
StyD4I CCNGG 1 cut(s) 236
TaiI ACGT 1 cut(s) 28
TaqI TCGA 3 cut(s) 215, 556, 607
TasI AATT 8 cut(s) 110, 144, 196, 317, 390, 400, 438, 501
Tru1I TTAA 3 cut(s) 182, 225, 321
Tru9I TTAA 3 cut(s) 182, 225, 321
TscAI CASTG 1 cut(s) 36
TseI GCWGC 2 cut(s) 296, 522
TspDTI ATGAA 2 cut(s) 257, 375
TspGWI ACGGA 1 cut(s) 107
TspRI CASTG 1 cut(s) 36
VpaK11BI GGWCC 1 cut(s) 258
XapI RAATTY 2 cut(s) 144, 400
XceI RCATGY 1 cut(s) 236
XhoI CTCGAG 1 cut(s) 555
XmnI GAANNNNTTC 1 cut(s) 105
XspI CTAG 1 cut(s) 333
ZraI GACGTC 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.