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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 197 |
| Acc36I | ACCTGC | 1 cut(s) | 197 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 158, 686 |
| AccIII | TCCGGA | 1 cut(s) | 107 |
| AciI | CCGC | 4 cut(s) | 593, 620, 647, 866 |
| AcsI | RAATTY | 3 cut(s) | 163, 377, 682 |
| AcyI | GRCGYC | 1 cut(s) | 548 |
| AfaI | GTAC | 1 cut(s) | 895 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 158, 632, 686, 716, 743, 797, 824, 851 |
| AgeI | ACCGGT | 1 cut(s) | 797 |
| AgsI | TTSAA | 2 cut(s) | 461, 963 |
| AjnI | CCWGG | 2 cut(s) | 157, 881 |
| AluBI | AGCT | 1 cut(s) | 45 |
| AluI | AGCT | 1 cut(s) | 45 |
| Alw26I | GTCTC | 1 cut(s) | 395 |
| Ama87I | CYCGRG | 1 cut(s) | 317 |
| Aor13HI | TCCGGA | 1 cut(s) | 107 |
| AoxI | GGCC | 1 cut(s) | 233 |
| ApeKI | GCWGC | 3 cut(s) | 251, 284, 616 |
| ApoI | RAATTY | 3 cut(s) | 163, 377, 682 |
| AsiGI | ACCGGT | 1 cut(s) | 797 |
| AsuC2I | CCSGG | 3 cut(s) | 717, 744, 852 |
| AsuHPI | GGTGA | 2 cut(s) | 221, 938 |
| AvaI | CYCGRG | 1 cut(s) | 317 |
| BaeGI | GKGCMC | 1 cut(s) | 146 |
| BbvI | GCAGC | 3 cut(s) | 238, 271, 628 |
| BccI | CCATC | 2 cut(s) | 179, 767 |
| BciT130I | CCWGG | 2 cut(s) | 159, 883 |
| BciVI | GTATCC | 2 cut(s) | 428, 851 |
| BcnI | CCSGG | 3 cut(s) | 717, 744, 852 |
| BcoDI | GTCTC | 1 cut(s) | 395 |
| BfaI | CTAG | 2 cut(s) | 96, 981 |
| BfuAI | ACCTGC | 1 cut(s) | 197 |
| BfuI | GTATCC | 2 cut(s) | 428, 851 |
| BglII | AGATCT | 1 cut(s) | 604 |
| BisI | GCNGC | 4 cut(s) | 252, 285, 617, 620 |
| BlsI | GCNGC | 4 cut(s) | 253, 286, 618, 621 |
| Bme1390I | CCNGG | 5 cut(s) | 159, 717, 744, 852, 883 |
| BmeT110I | CYCGRG | 1 cut(s) | 317 |
| BmrFI | CCNGG | 5 cut(s) | 159, 717, 744, 852, 883 |
| BmrI | ACTGGG | 1 cut(s) | 24 |
| BmuI | ACTGGG | 1 cut(s) | 24 |
| BpuEI | CTTGAG | 1 cut(s) | 222 |
| BpuMI | CCSGG | 3 cut(s) | 717, 744, 852 |
| BsaHI | GRCGYC | 1 cut(s) | 548 |
| BsaJI | CCNNGG | 6 cut(s) | 351, 715, 742, 850, 881, 882 |
| BsaWI | WCCGGW | 2 cut(s) | 107, 797 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 158, 632, 686, 716, 743, 797, 824, 851 |
| Bse118I | RCCGGY | 1 cut(s) | 797 |
| Bse1I | ACTGG | 1 cut(s) | 19 |
| BseAI | TCCGGA | 1 cut(s) | 107 |
| BseBI | CCWGG | 2 cut(s) | 159, 883 |
| BseDI | CCNNGG | 6 cut(s) | 351, 715, 742, 850, 881, 882 |
| BseGI | GGATG | 3 cut(s) | 90, 104, 193 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 158, 632, 686, 716, 743, 797, 824, 851 |
| BseNI | ACTGG | 1 cut(s) | 19 |
| BseSI | GKGCMC | 1 cut(s) | 146 |
| BseXI | GCAGC | 3 cut(s) | 238, 271, 628 |
| BshFI | GGCC | 1 cut(s) | 235 |
| BshTI | ACCGGT | 1 cut(s) | 797 |
| BsiHKCI | CYCGRG | 1 cut(s) | 317 |
| BsiSI | CCGG | 5 cut(s) | 108, 717, 744, 798, 852 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 158, 632, 686, 716, 743, 797, 824, 851 |
| BsmAI | GTCTC | 1 cut(s) | 395 |
| BsmI | GAATGC | 1 cut(s) | 668 |
| BsnI | GGCC | 1 cut(s) | 235 |
| BsoBI | CYCGRG | 1 cut(s) | 317 |
| Bsp1286I | GDGCHC | 1 cut(s) | 146 |
| Bsp13I | TCCGGA | 1 cut(s) | 107 |
| Bsp143I | GATC | 3 cut(s) | 292, 472, 604 |
| BspACI | CCGC | 4 cut(s) | 593, 620, 647, 866 |
| BspANI | GGCC | 1 cut(s) | 235 |
| BspEI | TCCGGA | 1 cut(s) | 107 |
| BspMI | ACCTGC | 1 cut(s) | 197 |
| BspQI | GCTCTTC | 1 cut(s) | 486 |
| BsrFI | RCCGGY | 1 cut(s) | 797 |
| BsrI | ACTGG | 1 cut(s) | 19 |
| BssAI | RCCGGY | 1 cut(s) | 797 |
| BssECI | CCNNGG | 6 cut(s) | 351, 715, 742, 850, 881, 882 |
| BssMI | GATC | 3 cut(s) | 292, 472, 604 |
| BssNI | GRCGYC | 1 cut(s) | 548 |
| Bst2UI | CCWGG | 2 cut(s) | 159, 883 |
| Bst4CI | ACNGT | 1 cut(s) | 352 |
| Bst6I | CTCTTC | 2 cut(s) | 396, 486 |
| BstACI | GRCGYC | 1 cut(s) | 548 |
| BstDEI | CTNAG | 1 cut(s) | 386 |
| BstDSI | CCRYGG | 1 cut(s) | 351 |
| BstF5I | GGATG | 3 cut(s) | 90, 104, 193 |
| BstKTI | GATC | 3 cut(s) | 295, 475, 607 |
| BstMAI | GTCTC | 1 cut(s) | 395 |
| BstMBI | GATC | 3 cut(s) | 292, 472, 604 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 260, 445 |
| BstNI | CCWGG | 2 cut(s) | 159, 883 |
| BstNSI | RCATGY | 1 cut(s) | 417 |
| BstSCI | CCNGG | 5 cut(s) | 157, 715, 742, 850, 881 |
| BstSLI | GKGCMC | 1 cut(s) | 146 |
| BstV1I | GCAGC | 3 cut(s) | 238, 271, 628 |
| BstX2I | RGATCY | 1 cut(s) | 604 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 178 |
| BstYI | RGATCY | 1 cut(s) | 604 |
| BsuI | GTATCC | 2 cut(s) | 428, 851 |
| BsuRI | GGCC | 1 cut(s) | 235 |
| BtgI | CCRYGG | 1 cut(s) | 351 |
| BtsCI | GGATG | 3 cut(s) | 90, 104, 193 |
| BveI | ACCTGC | 1 cut(s) | 197 |
| Cfr10I | RCCGGY | 1 cut(s) | 797 |
| CseI | GACGC | 1 cut(s) | 556 |
| Csp6I | GTAC | 1 cut(s) | 894 |
| CspAI | ACCGGT | 1 cut(s) | 797 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 643, 678 |
| CviAII | CATG | 2 cut(s) | 184, 414 |
| CviJI | RGCY | 7 cut(s) | 45, 72, 99, 235, 251, 284, 619 |
| CviKI_1 | RGCY | 7 cut(s) | 45, 72, 99, 235, 251, 284, 619 |
| CviQI | GTAC | 1 cut(s) | 894 |
| DdeI | CTNAG | 1 cut(s) | 386 |
| DpnI | GATC | 3 cut(s) | 294, 474, 606 |
| DpnII | GATC | 3 cut(s) | 292, 472, 604 |
| DraI | TTTAAA | 1 cut(s) | 85 |
| Eam1104I | CTCTTC | 2 cut(s) | 396, 486 |
| EarI | CTCTTC | 2 cut(s) | 396, 486 |
| Eco147I | AGGCCT | 1 cut(s) | 235 |
| Eco32I | GATATC | 1 cut(s) | 890 |
| Eco88I | CYCGRG | 1 cut(s) | 317 |
| EcoRI | GAATTC | 1 cut(s) | 377 |
| EcoRII | CCWGG | 2 cut(s) | 157, 881 |
| EcoRV | GATATC | 1 cut(s) | 890 |
| FaeI | CATG | 2 cut(s) | 187, 417 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 591, 623 |
| FatI | CATG | 2 cut(s) | 183, 413 |
| FauNDI | CATATG | 1 cut(s) | 138 |
| Fnu4HI | GCNGC | 4 cut(s) | 252, 285, 617, 620 |
| FokI | GGATG | 3 cut(s) | 77, 91, 200 |
| Fsp4HI | GCNGC | 4 cut(s) | 252, 285, 617, 620 |
| FspBI | CTAG | 2 cut(s) | 96, 981 |
| GluI | GCNGC | 4 cut(s) | 252, 285, 617, 620 |
| HaeIII | GGCC | 1 cut(s) | 235 |
| HapII | CCGG | 5 cut(s) | 108, 717, 744, 798, 852 |
| HgaI | GACGC | 1 cut(s) | 556 |
| Hin1I | GRCGYC | 1 cut(s) | 548 |
| Hin1II | CATG | 2 cut(s) | 187, 417 |
| HinfI | GANTC | 5 cut(s) | 777, 804, 831, 929, 976 |
| HpaII | CCGG | 5 cut(s) | 108, 717, 744, 798, 852 |
| HphI | GGTGA | 2 cut(s) | 221, 938 |
| Hpy166II | GTNNAC | 1 cut(s) | 896 |
| Hpy188I | TCNGA | 1 cut(s) | 42 |
| Hpy188III | TCNNGA | 6 cut(s) | 108, 317, 319, 461, 573, 608 |
| Hpy8I | GTNNAC | 1 cut(s) | 896 |
| HpyAV | CCTTC | 6 cut(s) | 13, 119, 274, 636, 829, 969 |
| HpyCH4III | ACNGT | 1 cut(s) | 352 |
| HpyCH4IV | ACGT | 1 cut(s) | 57 |
| HpyCH4V | TGCA | 9 cut(s) | 77, 206, 218, 254, 427, 668, 695, 722, 749 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 260, 445 |
| HpyF3I | CTNAG | 1 cut(s) | 386 |
| HpySE526I | ACGT | 1 cut(s) | 57 |
| Hsp92I | GRCGYC | 1 cut(s) | 548 |
| Hsp92II | CATG | 2 cut(s) | 187, 417 |
| Kpn2I | TCCGGA | 1 cut(s) | 107 |
| Kzo9I | GATC | 3 cut(s) | 292, 472, 604 |
| LguI | GCTCTTC | 1 cut(s) | 486 |
| Lsp1109I | GCAGC | 3 cut(s) | 238, 271, 628 |
| MaeI | CTAG | 2 cut(s) | 96, 981 |
| MaeII | ACGT | 1 cut(s) | 57 |
| MaeIII | GTNAC | 1 cut(s) | 53 |
| MalI | GATC | 3 cut(s) | 294, 474, 606 |
| MboI | GATC | 3 cut(s) | 292, 472, 604 |
| MboII | GAAGA | 5 cut(s) | 16, 413, 503, 598, 614 |
| MflI | RGATCY | 1 cut(s) | 604 |
| MhlI | GDGCHC | 1 cut(s) | 146 |
| MroI | TCCGGA | 1 cut(s) | 107 |
| MseI | TTAA | 4 cut(s) | 84, 246, 480, 794 |
| MspI | CCGG | 5 cut(s) | 108, 717, 744, 798, 852 |
| MspR9I | CCNGG | 5 cut(s) | 159, 717, 744, 852, 883 |
| Mva1269I | GAATGC | 1 cut(s) | 668 |
| MvaI | CCWGG | 2 cut(s) | 159, 883 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 260, 445 |
| NciI | CCSGG | 3 cut(s) | 717, 744, 852 |
| NdeI | CATATG | 1 cut(s) | 138 |
| NdeII | GATC | 3 cut(s) | 292, 472, 604 |
| NlaIII | CATG | 2 cut(s) | 187, 417 |
| NspI | RCATGY | 1 cut(s) | 417 |
| PaeR7I | CTCGAG | 1 cut(s) | 317 |
| PaqCI | CACCTGC | 1 cut(s) | 197 |
| PasI | CCCWGGG | 1 cut(s) | 882 |
| PceI | AGGCCT | 1 cut(s) | 235 |
| PciSI | GCTCTTC | 1 cut(s) | 486 |
| PctI | GAATGC | 1 cut(s) | 668 |
| PfeI | GAWTC | 5 cut(s) | 777, 804, 831, 929, 976 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 158, 686 |
| PfoI | TCCNGGA | 1 cut(s) | 157 |
| PinAI | ACCGGT | 1 cut(s) | 797 |
| PkrI | GCNGC | 4 cut(s) | 253, 286, 618, 621 |
| Psp6I | CCWGG | 2 cut(s) | 157, 881 |
| PspGI | CCWGG | 2 cut(s) | 157, 881 |
| PsuI | RGATCY | 1 cut(s) | 604 |
| RsaI | GTAC | 1 cut(s) | 895 |
| RsaNI | GTAC | 1 cut(s) | 894 |
| SapI | GCTCTTC | 1 cut(s) | 486 |
| SaqAI | TTAA | 4 cut(s) | 84, 246, 480, 794 |
| SatI | GCNGC | 4 cut(s) | 252, 285, 617, 620 |
| Sau3AI | GATC | 3 cut(s) | 292, 472, 604 |
| ScrFI | CCNGG | 5 cut(s) | 159, 717, 744, 852, 883 |
| SduI | GDGCHC | 1 cut(s) | 146 |
| SetI | ASST | 9 cut(s) | 47, 60, 201, 211, 628, 739, 766, 817, 877 |
| Sfr274I | CTCGAG | 1 cut(s) | 317 |
| SlaI | CTCGAG | 1 cut(s) | 317 |
| SmlI | CTYRAG | 2 cut(s) | 237, 317 |
| SmoI | CTYRAG | 2 cut(s) | 237, 317 |
| SseBI | AGGCCT | 1 cut(s) | 235 |
| SsiI | CCGC | 4 cut(s) | 593, 620, 647, 866 |
| SspMI | CTAG | 2 cut(s) | 96, 981 |
| StuI | AGGCCT | 1 cut(s) | 235 |
| StyD4I | CCNGG | 5 cut(s) | 157, 715, 742, 850, 881 |
| TaaI | ACNGT | 1 cut(s) | 352 |
| TaiI | ACGT | 1 cut(s) | 60 |
| TaqI | TCGA | 5 cut(s) | 318, 369, 432, 475, 771 |
| TauI | GCSGC | 1 cut(s) | 622 |
| TfiI | GAWTC | 5 cut(s) | 777, 804, 831, 929, 976 |
| Tru1I | TTAA | 4 cut(s) | 84, 246, 480, 794 |
| Tru9I | TTAA | 4 cut(s) | 84, 246, 480, 794 |
| TseI | GCWGC | 3 cut(s) | 251, 284, 616 |
| TspDTI | ATGAA | 3 cut(s) | 17, 138, 811 |
| TspGWI | ACGGA | 1 cut(s) | 283 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 158, 686 |
| XapI | RAATTY | 3 cut(s) | 163, 377, 682 |
| XceI | RCATGY | 1 cut(s) | 417 |
| XhoI | CTCGAG | 1 cut(s) | 317 |
| XspI | CTAG | 2 cut(s) | 96, 981 |