Rmu_sc0003541.1_g000014

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003541.1
OG0000127
Physical Location & Seq
Reverse (-)
85333 .. 86451
1119 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003541.1_g000014.1.cds

Sequence Viewer

Length: 1119 bp
atgaccaaatcgaaaggaaaagaaaaaaagggtgatttcattagtttagaatgttacgagattgttaaggggtttcaacaatttgatgacattccaaaccattcatctttgactggaggaacctccaggggaggaactcaacggatgcacacacaacaatccgttcctgattctcatatccagttggacatagatgcagatgaggtaaacgccgatgcaactcccaatccttcggtgaggcctcaaggaaagaaggctgccaaagaagctcttcggaaaggaaagaaagcatctaatgattccagtcctctgacatccgctgtggagactatagcaacaattccaaatcattcctcttcggctggaggaatctccaggggaggaactcaacggatgcacacacaacaatccgttcctgattctcatatccagttggacatagatgcagatgaggtaaacgccgatgcaactcccaatccttcggtgaggcctcaaggaaagaaggctgccaaagaagctcttcggaaaggaaagaaagcatctaatgattctagtcctctgacagccgctgtggagactatagcaaccaaccaaacatcaatgatgtctgccaaggagaaacgtgatgaggaatatgctcgacatctccgtgaccaacaacaacgagattatatacgcttgcaaacggatatgggaaacgaggcattcaaaattcaagagagggaagagcgtattatggagatggacacaagtaagatgacgccaaccaaaaagaattactggcaaagaaaacaaaaaaaaattgcagagaaagaagctgaagatgcaaccagtggcttcccacaaccaccattccccggtgggtattatccacaatctcctttctctggtggctatccacaacctcctttccccggtggctatccacaacctcctttccccggtggctatccacaaccaccattccccggtgggtattatccacaatctcctttccccggtggcttcccacaaccaccattcaccgggggtgtcccttccccacctttctcttcgggtgaatccaccaaccccaaccatatgggtgaccccacaaacacaaattgtattcctaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

372

Amino Acids

40.53

Weight (kDa)

7.73

Isoelectric Point (pI)

62.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000127)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02381 FvH4_1g19463 FvH4_1g28433 FvH4_2g16143 FvH4_2g18491 FvH4_2g27711 FvH4_3g19631 FvH4_3g23573 FvH4_4g35743 FvH4_5g23701 FvH4_6g19603 FvH4_6g39781 FvH4_6g40561 FvH4_7g02563 FvH4_7g11472 FvH4_7g17530
rosa_chinensis RchiOBHm_Chr1g0315991 RchiOBHm_Chr1g0318371 RchiOBHm_Chr1g0328341 RchiOBHm_Chr1g0331431 RchiOBHm_Chr1g0344801 RchiOBHm_Chr1g0371461 RchiOBHm_Chr1g0379261 RchiOBHm_Chr2g0117661 RchiOBHm_Chr5g0011791 RchiOBHm_Chr5g0020991 RchiOBHm_Chr5g0060631 RchiOBHm_Chr5g0064181 RchiOBHm_Chr5g0080181 RchiOBHm_Chr6g0254691 RchiOBHm_Chr6g0260101 RchiOBHm_Chr6g0290901 RchiOBHm_Chr7g0201691
rosa_laevigata RLG00000003529 RLG00000009370 RLG00000013568
rosa_multiflora Rmu_co8437743.1_g000001 Rmu_sc0000063.1_g000028 Rmu_sc0000098.1_g000004 Rmu_sc0000166.1_g000028 Rmu_sc0000258.1_g000102 Rmu_sc0000288.1_g000018 Rmu_sc0000333.1_g000043 Rmu_sc0000451.1_g000011 Rmu_sc0000455.1_g000003 Rmu_sc0000479.1_g000002 Rmu_sc0000687.1_g000014 Rmu_sc0000733.1_g000024 Rmu_sc0000736.1_g000001 Rmu_sc0000745.1_g000017 Rmu_sc0000760.1_g000031 Rmu_sc0000776.1_g000044 Rmu_sc0000828.1_g000011 Rmu_sc0000830.1_g000027 Rmu_sc0000857.1_g000025 Rmu_sc0000864.1_g000013 Rmu_sc0001016.1_g000034 Rmu_sc0001016.1_g000035 Rmu_sc0001036.1_g000015 Rmu_sc0001096.1_g000020 Rmu_sc0001145.1_g000023 Rmu_sc0001167.1_g000057 Rmu_sc0001173.1_g000030 Rmu_sc0001260.1_g000006 Rmu_sc0001266.1_g000016 Rmu_sc0001346.1_g000003 Rmu_sc0001346.1_g000004 Rmu_sc0001386.1_g000005 Rmu_sc0001501.1_g000057 Rmu_sc0001565.1_g000058 Rmu_sc0001634.1_g000047 Rmu_sc0001699.1_g000018 Rmu_sc0001700.1_g000041 Rmu_sc0001700.1_g000055 Rmu_sc0001725.1_g000005 Rmu_sc0001823.1_g000005 Rmu_sc0001877.1_g000014 Rmu_sc0001942.1_g000059 Rmu_sc0001966.1_g000033 Rmu_sc0001998.1_g000009 Rmu_sc0002011.1_g000030 Rmu_sc0002147.1_g000007 Rmu_sc0002176.1_g000005 Rmu_sc0002235.1_g000097 Rmu_sc0002324.1_g000002 Rmu_sc0002352.1_g000011 Rmu_sc0002365.1_g000022 Rmu_sc0002548.1_g000007 Rmu_sc0002890.1_g000008 Rmu_sc0002936.1_g000003 Rmu_sc0002955.1_g000016 Rmu_sc0003160.1_g000032 Rmu_sc0003452.1_g000010 Rmu_sc0003490.1_g000023 Rmu_sc0003541.1_g000014 Rmu_sc0003555.1_g000014 Rmu_sc0003759.1_g000008 Rmu_sc0003843.1_g000001 Rmu_sc0003846.1_g000005 Rmu_sc0003890.1_g000019 Rmu_sc0003953.1_g000016 Rmu_sc0003967.1_g000001 Rmu_sc0004068.1_g000002 Rmu_sc0004101.1_g000004 Rmu_sc0004298.1_g000010 Rmu_sc0004507.1_g000008 Rmu_sc0004649.1_g000015 Rmu_sc0004719.1_g000006 Rmu_sc0004751.1_g000012 Rmu_sc0004821.1_g000005 Rmu_sc0004868.1_g000003 Rmu_sc0004876.1_g000023 Rmu_sc0004932.1_g000020 Rmu_sc0005093.1_g000020 Rmu_sc0005132.1_g000019 Rmu_sc0005274.1_g000001 Rmu_sc0005381.1_g000013 Rmu_sc0005693.1_g000009 Rmu_sc0005708.1_g000011 Rmu_sc0005834.1_g000016 Rmu_sc0005966.1_g000017 Rmu_sc0006173.1_g000033 Rmu_sc0006175.1_g000012 Rmu_sc0006590.1_g000004 Rmu_sc0006695.1_g000044 Rmu_sc0007061.1_g000002 Rmu_sc0007069.1_g000023 Rmu_sc0007216.1_g000006 Rmu_sc0008124.1_g000026 Rmu_sc0008148.1_g000028 Rmu_sc0008198.1_g000004 Rmu_sc0008423.1_g000003 Rmu_sc0008441.1_g000011 Rmu_sc0008707.1_g000005 Rmu_sc0009101.1_g000008 Rmu_sc0009240.1_g000039 Rmu_sc0009414.1_g000002 Rmu_sc0009628.1_g000001 Rmu_sc0010048.1_g000007 Rmu_sc0010275.1_g000001 Rmu_sc0010338.1_g000004 Rmu_sc0010659.1_g000005 Rmu_sc0010691.1_g000001 Rmu_sc0011023.1_g000006 Rmu_sc0011533.1_g000001 Rmu_sc0011901.1_g000001 Rmu_sc0012746.1_g000042 Rmu_sc0012773.1_g000005 Rmu_sc0012952.1_g000005 Rmu_sc0014568.1_g000002 Rmu_sc0014568.1_g000003 Rmu_sc0015188.1_g000004 Rmu_sc0019714.1_g000001 Rmu_sc0020148.1_g000003 Rmu_sc0020260.1_g000003 Rmu_sc0021213.1_g000002 Rmu_sc0022616.1_g000001 Rmu_ssc0000084.1_g000006 Rmu_ssc0000116.1_g000017 Rmu_ssc0000116.1_g000018 Rmu_ssc0000189.1_g000037 Rmu_ssc0000330.1_g000009 Rmu_ssc0000359.1_g000004 Rmu_ssc0000366.1_g000031 Rmu_ssc0000386.1_g000056 Rmu_ssc0000387.1_g000006 Rmu_ssc0000400.1_g000065 Rmu_ssc0000440.1_g000006 Rmu_ssc0000452.1_g000014
rosa_roxburghii Rroxscaffold_1G00020180 Rroxscaffold_2G00089580 Rroxscaffold_2G00143500 Rroxscaffold_3G00264360 Rroxscaffold_4G00316450 Rroxscaffold_4G00327050 Rroxscaffold_5G00350260 Rroxscaffold_5G00351750 Rroxscaffold_5G00364680 Rroxscaffold_5G00376220 Rroxscaffold_6G00391720
rosa_rugosa Rorug04G0096700 Rorug05G0284300 Rorug06G0059800 Rorug06G0059900 Rorug06G0060000 Rorug06G0060100 Rorug06G0060200 Rorug06G0127700 Rorug06G0243400
rosa_samantha Rh1AG033000 Rh1AG274600 Rh1DG069700 Rh2DG069900 Rh2DG210700 Rh2DG560100 Rh3AG245500 Rh3BG095400 Rh4AG018100 Rh4AG084900 Rh4AG177900 Rh4CG092300 Rh4CG194700 Rh5BG350600 Rh6BG362400 Rh7DG198200 Rh7DG403500
rosa_wichuraiana Rw1G008260 Rw1G035940 Rw2G027180 Rw4G003470 Rw4G010610 Rw5G037240 Rw6G036490 Rw7G015690 Rw7G028950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 318, 567
AcsI RAATTY 1 cut(s) 711
AcuI CTGAAG 1 cut(s) 840
AcyI GRCGYC 1 cut(s) 761
AfiI CCNNNNNNNGG 7 cut(s) 857, 887, 914, 941, 968, 998, 1025
AgsI TTSAA 3 cut(s) 77, 709, 716
AjnI CCWGG 2 cut(s) 125, 374
AluBI AGCT 3 cut(s) 269, 518, 818
AluI AGCT 3 cut(s) 269, 518, 818
Alw26I GTCTC 2 cut(s) 320, 569
AlwNI CAGNNNCTG 1 cut(s) 569
AoxI GGCC 2 cut(s) 239, 488
ApeKI GCWGC 2 cut(s) 257, 506
ApoI RAATTY 1 cut(s) 711
Asp700I GAANNNNTTC 2 cut(s) 270, 519
AsuC2I CCSGG 6 cut(s) 858, 915, 942, 969, 999, 1027
AsuHPI GGTGA 6 cut(s) 44, 247, 496, 1015, 1070, 1097
BbvI GCAGC 2 cut(s) 244, 493
BccI CCATC 1 cut(s) 736
BciT130I CCWGG 2 cut(s) 127, 376
BcnI CCSGG 6 cut(s) 858, 915, 942, 969, 999, 1027
BcoDI GTCTC 2 cut(s) 320, 569
BfaI CTAG 1 cut(s) 552
BfmI CTRYAG 2 cut(s) 330, 579
BisI GCNGC 3 cut(s) 258, 507, 567
BlsI GCNGC 3 cut(s) 259, 508, 568
Bme1390I CCNGG 8 cut(s) 127, 376, 858, 915, 942, 969, 999, 1027
BmiI GGNNCC 1 cut(s) 121
BmrFI CCNGG 8 cut(s) 127, 376, 858, 915, 942, 969, 999, 1027
BmsI GCATC 9 cut(s) 135, 184, 205, 299, 384, 433, 454, 548, 814
BpmI CTGGAG 4 cut(s) 109, 135, 358, 384
BpuEI CTTGAG 2 cut(s) 228, 477
BpuMI CCSGG 6 cut(s) 858, 915, 942, 969, 999, 1027
BsaHI GRCGYC 1 cut(s) 761
BsaJI CCNNGG 9 cut(s) 126, 375, 612, 856, 913, 940, 967, 997, 1026
Bsc4I CCNNNNNNNGG 7 cut(s) 857, 887, 914, 941, 968, 998, 1025
Bse1I ACTGG 6 cut(s) 118, 181, 303, 430, 785, 831
BseBI CCWGG 2 cut(s) 127, 376
BseDI CCNNGG 9 cut(s) 126, 375, 612, 856, 913, 940, 967, 997, 1026
BseGI GGATG 3 cut(s) 150, 314, 399
BseLI CCNNNNNNNGG 7 cut(s) 857, 887, 914, 941, 968, 998, 1025
BseNI ACTGG 6 cut(s) 118, 181, 303, 430, 785, 831
BseXI GCAGC 2 cut(s) 244, 493
BshFI GGCC 2 cut(s) 241, 490
BsiSI CCGG 6 cut(s) 858, 915, 942, 969, 999, 1026
BslFI GGGAC 1 cut(s) 1019
BslI CCNNNNNNNGG 7 cut(s) 857, 887, 914, 941, 968, 998, 1025
BsmAI GTCTC 2 cut(s) 320, 569
BsmFI GGGAC 1 cut(s) 1019
BsmI GAATGC 1 cut(s) 704
BsnI GGCC 2 cut(s) 241, 490
BspACI CCGC 2 cut(s) 318, 567
BspANI GGCC 2 cut(s) 241, 490
BspLI GGNNCC 1 cut(s) 121
BspQI GCTCTTC 3 cut(s) 276, 525, 720
BsrI ACTGG 6 cut(s) 118, 181, 303, 430, 785, 831
BssECI CCNNGG 9 cut(s) 126, 375, 612, 856, 913, 940, 967, 997, 1026
BssNI GRCGYC 1 cut(s) 761
BssT1I CCWWGG 1 cut(s) 612
Bst2UI CCWGG 2 cut(s) 127, 376
Bst6I CTCTTC 5 cut(s) 276, 361, 525, 720, 1057
BstACI GRCGYC 1 cut(s) 761
BstC8I GCNNGC 1 cut(s) 680
BstEII GGTNACC 1 cut(s) 1085
BstF5I GGATG 3 cut(s) 150, 314, 399
BstMAI GTCTC 2 cut(s) 320, 569
BstMWI GCNNNNNNNGC 3 cut(s) 266, 515, 824
BstNI CCWGG 2 cut(s) 127, 376
BstPI GGTNACC 1 cut(s) 1085
BstSCI CCNGG 8 cut(s) 125, 374, 856, 913, 940, 967, 997, 1025
BstSFI CTRYAG 2 cut(s) 330, 579
BstV1I GCAGC 2 cut(s) 244, 493
BstXI CCANNNNNNTGG 1 cut(s) 1081
BsuRI GGCC 2 cut(s) 241, 490
BtsCI GGATG 3 cut(s) 150, 314, 399
BtsIMutI CAGTG 1 cut(s) 838
Cac8I GCNNGC 1 cut(s) 680
CaiI CAGNNNCTG 1 cut(s) 569
CseI GACGC 1 cut(s) 769
Eam1104I CTCTTC 5 cut(s) 276, 361, 525, 720, 1057
EarI CTCTTC 5 cut(s) 276, 361, 525, 720, 1057
Eco130I CCWWGG 1 cut(s) 612
Eco147I AGGCCT 2 cut(s) 241, 490
Eco57I CTGAAG 1 cut(s) 840
Eco91I GGTNACC 1 cut(s) 1085
EcoO65I GGTNACC 1 cut(s) 1085
EcoRII CCWGG 2 cut(s) 125, 374
EcoT14I CCWWGG 1 cut(s) 612
ErhI CCWWGG 1 cut(s) 612
FalI AAGNNNNNCTT 4 cut(s) 255, 287, 504, 536
FaqI GGGAC 1 cut(s) 1019
FauNDI CATATG 1 cut(s) 1080
Fnu4HI GCNGC 3 cut(s) 258, 507, 567
FokI GGATG 3 cut(s) 157, 301, 406
Fsp4HI GCNGC 3 cut(s) 258, 507, 567
FspBI CTAG 1 cut(s) 552
GluI GCNGC 3 cut(s) 258, 507, 567
GsuI CTGGAG 4 cut(s) 109, 135, 358, 384
HaeIII GGCC 2 cut(s) 241, 490
HapII CCGG 6 cut(s) 858, 915, 942, 969, 999, 1026
HgaI GACGC 1 cut(s) 769
Hin1I GRCGYC 1 cut(s) 761
HinfI GANTC 6 cut(s) 170, 299, 369, 419, 548, 1061
HpaII CCGG 6 cut(s) 858, 915, 942, 969, 999, 1026
HphI GGTGA 6 cut(s) 44, 247, 496, 1015, 1070, 1097
Hpy166II GTNNAC 2 cut(s) 208, 457
Hpy188I TCNGA 4 cut(s) 276, 312, 525, 561
Hpy188III TCNNGA 3 cut(s) 167, 416, 716
Hpy8I GTNNAC 2 cut(s) 208, 457
HpyAV CCTTC 5 cut(s) 240, 247, 489, 496, 1047
HpyCH4IV ACGT 1 cut(s) 622
HpyCH4V TGCA 9 cut(s) 148, 197, 218, 397, 446, 467, 682, 806, 827
HpyF10VI GCNNNNNNNGC 3 cut(s) 266, 515, 824
HpySE526I ACGT 1 cut(s) 622
Hsp92I GRCGYC 1 cut(s) 761
LguI GCTCTTC 3 cut(s) 276, 525, 720
Lsp1109I GCAGC 2 cut(s) 244, 493
LweI GCATC 9 cut(s) 135, 184, 205, 299, 384, 433, 454, 548, 814
MaeI CTAG 1 cut(s) 552
MaeII ACGT 1 cut(s) 622
MaeIII GTNAC 3 cut(s) 53, 650, 1085
MboII GAAGA 6 cut(s) 263, 348, 512, 737, 833, 1044
MluCI AATT 7 cut(s) 80, 339, 711, 775, 801, 1102, 1114
MmeI TCCRAC 2 cut(s) 165, 414
MroXI GAANNNNTTC 2 cut(s) 270, 519
MseI TTAA 2 cut(s) 66, 1117
MslI CAYNNNNRTG 2 cut(s) 648, 1083
MspA1I CMGCKG 2 cut(s) 320, 569
MspI CCGG 6 cut(s) 858, 915, 942, 969, 999, 1026
MspR9I CCNGG 8 cut(s) 127, 376, 858, 915, 942, 969, 999, 1027
Mva1269I GAATGC 1 cut(s) 704
MvaI CCWGG 2 cut(s) 127, 376
MwoI GCNNNNNNNGC 3 cut(s) 266, 515, 824
NciI CCSGG 6 cut(s) 858, 915, 942, 969, 999, 1027
NdeI CATATG 1 cut(s) 1080
NlaIV GGNNCC 1 cut(s) 121
NmuCI GTSAC 2 cut(s) 650, 1085
PceI AGGCCT 2 cut(s) 241, 490
PciSI GCTCTTC 3 cut(s) 276, 525, 720
PcsI WCGNNNNNNNCGW 1 cut(s) 646
PctI GAATGC 1 cut(s) 704
PdmI GAANNNNTTC 2 cut(s) 270, 519
PfeI GAWTC 6 cut(s) 170, 299, 369, 419, 548, 1061
PkrI GCNGC 3 cut(s) 259, 508, 568
Psp6I CCWGG 2 cut(s) 125, 374
PspEI GGTNACC 1 cut(s) 1085
PspGI CCWGG 2 cut(s) 125, 374
PspN4I GGNNCC 1 cut(s) 121
PstNI CAGNNNCTG 1 cut(s) 569
RseI CAYNNNNRTG 2 cut(s) 648, 1083
SapI GCTCTTC 3 cut(s) 276, 525, 720
SaqAI TTAA 2 cut(s) 66, 1117
SatI GCNGC 3 cut(s) 258, 507, 567
ScrFI CCNGG 8 cut(s) 127, 376, 858, 915, 942, 969, 999, 1027
SfaNI GCATC 9 cut(s) 135, 184, 205, 299, 384, 433, 454, 548, 814
SfcI CTRYAG 2 cut(s) 330, 579
SmiMI CAYNNNNRTG 2 cut(s) 648, 1083
SmlI CTYRAG 2 cut(s) 243, 492
SmoI CTYRAG 2 cut(s) 243, 492
Sse9I AATT 7 cut(s) 80, 339, 711, 775, 801, 1102, 1114
SseBI AGGCCT 2 cut(s) 241, 490
SsiI CCGC 2 cut(s) 318, 567
SspMI CTAG 1 cut(s) 552
StuI AGGCCT 2 cut(s) 241, 490
StyD4I CCNGG 8 cut(s) 125, 374, 856, 913, 940, 967, 997, 1025
StyI CCWWGG 1 cut(s) 612
TaiI ACGT 1 cut(s) 625
TaqI TCGA 2 cut(s) 11, 640
TasI AATT 7 cut(s) 80, 339, 711, 775, 801, 1102, 1114
TauI GCSGC 1 cut(s) 569
TfiI GAWTC 6 cut(s) 170, 299, 369, 419, 548, 1061
Tru1I TTAA 2 cut(s) 66, 1117
Tru9I TTAA 2 cut(s) 66, 1117
TscAI CASTG 1 cut(s) 838
TseFI GTSAC 2 cut(s) 650, 1085
TseI GCWGC 2 cut(s) 257, 506
Tsp45I GTSAC 2 cut(s) 650, 1085
TspDTI ATGAA 2 cut(s) 28, 93
TspGWI ACGGA 6 cut(s) 151, 157, 400, 406, 638, 701
TspRI CASTG 1 cut(s) 838
XapI RAATTY 1 cut(s) 711
XmnI GAANNNNTTC 2 cut(s) 270, 519
XspI CTAG 1 cut(s) 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.