Rmu_sc0011023.1_g000006

Peptidyl-prolyl cis-trans isomerase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011023.1
Physical Location & Seq
Reverse (-)
19749 .. 20819
1071 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011023.1_g000006.1.cds

Sequence Viewer

Length: 675 bp
atgaccgaacaaaggggaaacacacgtccagtggccggacaagagagagatcaaaatgaagatgataatactcaagacaaaaggagatggacggatgaggaaaatgttcaattgtgcaagtcttggaaagttagccgatcagcccaatctttgcagggaaggtggaaaattttgaaggttgaactctttgagtggcattgtgcattaaggcaagcaaaaaattggtacaagagcggttcgaatgcagttgatgagcaagatgaagcacataaattgtggcatgccgggatgaagagaaaaagtggaaagaccaaaaggcacaattttcagaggtttgatagttatgctgttgtggagggctttgcacaatttaaagacatccctagccatacatccggaggaacatcaaatgaaggaagtcaacatatgcgcacacaaccaattcctggaaattctcccagcaacttggacatggatgtagatgaggtaattgcaggtgaaactgcagatcctaatgtgaggcctcaaggaaggatggcagcaaaagaaacaatacggaaaggaaataaggcagcgaaagatcaaagtcctttgtcaagcgcactcgagagtatagcgaacaaccaaatagaggcaaccgcgggcaagaaaaaactcgatgaggaattcgcttga

Protein Analysis

224

Amino Acids

25.28

Weight (kDa)

8.45

Isoelectric Point (pI)

52.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000127)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02381 FvH4_1g19463 FvH4_1g28433 FvH4_2g16143 FvH4_2g18491 FvH4_2g27711 FvH4_3g19631 FvH4_3g23573 FvH4_4g35743 FvH4_5g23701 FvH4_6g19603 FvH4_6g39781 FvH4_6g40561 FvH4_7g02563 FvH4_7g11472 FvH4_7g17530
rosa_chinensis RchiOBHm_Chr1g0315991 RchiOBHm_Chr1g0318371 RchiOBHm_Chr1g0328341 RchiOBHm_Chr1g0331431 RchiOBHm_Chr1g0344801 RchiOBHm_Chr1g0371461 RchiOBHm_Chr1g0379261 RchiOBHm_Chr2g0117661 RchiOBHm_Chr5g0011791 RchiOBHm_Chr5g0020991 RchiOBHm_Chr5g0060631 RchiOBHm_Chr5g0064181 RchiOBHm_Chr5g0080181 RchiOBHm_Chr6g0254691 RchiOBHm_Chr6g0260101 RchiOBHm_Chr6g0290901 RchiOBHm_Chr7g0201691
rosa_laevigata RLG00000003529 RLG00000009370 RLG00000013568
rosa_multiflora Rmu_co8437743.1_g000001 Rmu_sc0000063.1_g000028 Rmu_sc0000098.1_g000004 Rmu_sc0000166.1_g000028 Rmu_sc0000258.1_g000102 Rmu_sc0000288.1_g000018 Rmu_sc0000333.1_g000043 Rmu_sc0000451.1_g000011 Rmu_sc0000455.1_g000003 Rmu_sc0000479.1_g000002 Rmu_sc0000687.1_g000014 Rmu_sc0000733.1_g000024 Rmu_sc0000736.1_g000001 Rmu_sc0000745.1_g000017 Rmu_sc0000760.1_g000031 Rmu_sc0000776.1_g000044 Rmu_sc0000828.1_g000011 Rmu_sc0000830.1_g000027 Rmu_sc0000857.1_g000025 Rmu_sc0000864.1_g000013 Rmu_sc0001016.1_g000034 Rmu_sc0001016.1_g000035 Rmu_sc0001036.1_g000015 Rmu_sc0001096.1_g000020 Rmu_sc0001145.1_g000023 Rmu_sc0001167.1_g000057 Rmu_sc0001173.1_g000030 Rmu_sc0001260.1_g000006 Rmu_sc0001266.1_g000016 Rmu_sc0001346.1_g000003 Rmu_sc0001346.1_g000004 Rmu_sc0001386.1_g000005 Rmu_sc0001501.1_g000057 Rmu_sc0001565.1_g000058 Rmu_sc0001634.1_g000047 Rmu_sc0001699.1_g000018 Rmu_sc0001700.1_g000041 Rmu_sc0001700.1_g000055 Rmu_sc0001725.1_g000005 Rmu_sc0001823.1_g000005 Rmu_sc0001877.1_g000014 Rmu_sc0001942.1_g000059 Rmu_sc0001966.1_g000033 Rmu_sc0001998.1_g000009 Rmu_sc0002011.1_g000030 Rmu_sc0002147.1_g000007 Rmu_sc0002176.1_g000005 Rmu_sc0002235.1_g000097 Rmu_sc0002324.1_g000002 Rmu_sc0002352.1_g000011 Rmu_sc0002365.1_g000022 Rmu_sc0002548.1_g000007 Rmu_sc0002890.1_g000008 Rmu_sc0002936.1_g000003 Rmu_sc0002955.1_g000016 Rmu_sc0003160.1_g000032 Rmu_sc0003452.1_g000010 Rmu_sc0003490.1_g000023 Rmu_sc0003541.1_g000014 Rmu_sc0003555.1_g000014 Rmu_sc0003759.1_g000008 Rmu_sc0003843.1_g000001 Rmu_sc0003846.1_g000005 Rmu_sc0003890.1_g000019 Rmu_sc0003953.1_g000016 Rmu_sc0003967.1_g000001 Rmu_sc0004068.1_g000002 Rmu_sc0004101.1_g000004 Rmu_sc0004298.1_g000010 Rmu_sc0004507.1_g000008 Rmu_sc0004649.1_g000015 Rmu_sc0004719.1_g000006 Rmu_sc0004751.1_g000012 Rmu_sc0004821.1_g000005 Rmu_sc0004868.1_g000003 Rmu_sc0004876.1_g000023 Rmu_sc0004932.1_g000020 Rmu_sc0005093.1_g000020 Rmu_sc0005132.1_g000019 Rmu_sc0005274.1_g000001 Rmu_sc0005381.1_g000013 Rmu_sc0005693.1_g000009 Rmu_sc0005708.1_g000011 Rmu_sc0005834.1_g000016 Rmu_sc0005966.1_g000017 Rmu_sc0006173.1_g000033 Rmu_sc0006175.1_g000012 Rmu_sc0006590.1_g000004 Rmu_sc0006695.1_g000044 Rmu_sc0007061.1_g000002 Rmu_sc0007069.1_g000023 Rmu_sc0007216.1_g000006 Rmu_sc0008124.1_g000026 Rmu_sc0008148.1_g000028 Rmu_sc0008198.1_g000004 Rmu_sc0008423.1_g000003 Rmu_sc0008441.1_g000011 Rmu_sc0008707.1_g000005 Rmu_sc0009101.1_g000008 Rmu_sc0009240.1_g000039 Rmu_sc0009414.1_g000002 Rmu_sc0009628.1_g000001 Rmu_sc0010048.1_g000007 Rmu_sc0010275.1_g000001 Rmu_sc0010338.1_g000004 Rmu_sc0010659.1_g000005 Rmu_sc0010691.1_g000001 Rmu_sc0011023.1_g000006 Rmu_sc0011533.1_g000001 Rmu_sc0011901.1_g000001 Rmu_sc0012746.1_g000042 Rmu_sc0012773.1_g000005 Rmu_sc0012952.1_g000005 Rmu_sc0014568.1_g000002 Rmu_sc0014568.1_g000003 Rmu_sc0015188.1_g000004 Rmu_sc0019714.1_g000001 Rmu_sc0020148.1_g000003 Rmu_sc0020260.1_g000003 Rmu_sc0021213.1_g000002 Rmu_sc0022616.1_g000001 Rmu_ssc0000084.1_g000006 Rmu_ssc0000116.1_g000017 Rmu_ssc0000116.1_g000018 Rmu_ssc0000189.1_g000037 Rmu_ssc0000330.1_g000009 Rmu_ssc0000359.1_g000004 Rmu_ssc0000366.1_g000031 Rmu_ssc0000386.1_g000056 Rmu_ssc0000387.1_g000006 Rmu_ssc0000400.1_g000065 Rmu_ssc0000440.1_g000006 Rmu_ssc0000452.1_g000014
rosa_roxburghii Rroxscaffold_1G00020180 Rroxscaffold_2G00089580 Rroxscaffold_2G00143500 Rroxscaffold_3G00264360 Rroxscaffold_4G00316450 Rroxscaffold_4G00327050 Rroxscaffold_5G00350260 Rroxscaffold_5G00351750 Rroxscaffold_5G00364680 Rroxscaffold_5G00376220 Rroxscaffold_6G00391720
rosa_rugosa Rorug04G0096700 Rorug05G0284300 Rorug06G0059800 Rorug06G0059900 Rorug06G0060000 Rorug06G0060100 Rorug06G0060200 Rorug06G0127700 Rorug06G0243400
rosa_samantha Rh1AG033000 Rh1AG274600 Rh1DG069700 Rh2DG069900 Rh2DG210700 Rh2DG560100 Rh3AG245500 Rh3BG095400 Rh4AG018100 Rh4AG084900 Rh4AG177900 Rh4CG092300 Rh4CG194700 Rh5BG350600 Rh6BG362400 Rh7DG198200 Rh7DG403500
rosa_wichuraiana Rw1G008260 Rw1G035940 Rw2G027180 Rw4G003470 Rw4G010610 Rw5G037240 Rw6G036490 Rw7G015690 Rw7G028950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 485
Acc16I TGCGCA 1 cut(s) 431
Acc36I ACCTGC 1 cut(s) 485
AccB7I CCANNNNNTGG 1 cut(s) 446
AccBSI CCGCTC 1 cut(s) 234
AccII CGCG 1 cut(s) 641
AccIII TCCGGA 1 cut(s) 395
AciI CCGC 3 cut(s) 234, 639, 641
AclWI GGATC 1 cut(s) 503
AcoI YGGCCR 1 cut(s) 33
AcsI RAATTY 3 cut(s) 168, 451, 665
AfaI GTAC 1 cut(s) 227
AfiI CCNNNNNNNGG 4 cut(s) 12, 35, 446, 631
AflIII ACRYGT 1 cut(s) 23
AgsI TTSAA 3 cut(s) 110, 175, 182
AjiI CACGTC 1 cut(s) 26
AjnI CCWGG 1 cut(s) 445
AlwI GGATC 1 cut(s) 503
Ama87I CYCGRG 1 cut(s) 605
Aor13HI TCCGGA 1 cut(s) 395
AoxI GGCC 2 cut(s) 33, 521
ApeKI GCWGC 2 cut(s) 539, 572
ApoI RAATTY 3 cut(s) 168, 451, 665
Asp700I GAANNNNTTC 1 cut(s) 105
AspLEI GCGC 2 cut(s) 432, 602
AsuC2I CCSGG 1 cut(s) 286
AsuHPI GGTGA 1 cut(s) 509
AsuII TTCGAA 1 cut(s) 239
AvaI CYCGRG 1 cut(s) 605
BbvI GCAGC 2 cut(s) 551, 584
BccI CCATC 2 cut(s) 81, 529
BciT130I CCWGG 1 cut(s) 447
BcnI CCSGG 1 cut(s) 286
BfaI CTAG 1 cut(s) 384
BfmI CTRYAG 1 cut(s) 504
BfuAI ACCTGC 1 cut(s) 485
BisI GCNGC 2 cut(s) 540, 573
BlsI GCNGC 2 cut(s) 541, 574
Bme1390I CCNGG 2 cut(s) 286, 447
BmeT110I CYCGRG 1 cut(s) 605
BmgBI CACGTC 1 cut(s) 26
BmrFI CCNGG 2 cut(s) 286, 447
Bpu14I TTCGAA 1 cut(s) 239
BpuEI CTTGAG 2 cut(s) 57, 510
BpuMI CCSGG 1 cut(s) 286
BsaJI CCNNGG 1 cut(s) 639
BsaWI WCCGGW 1 cut(s) 395
Bsc4I CCNNNNNNNGG 4 cut(s) 12, 35, 446, 631
Bse1I ACTGG 1 cut(s) 29
BseAI TCCGGA 1 cut(s) 395
BseBI CCWGG 1 cut(s) 447
BseDI CCNNGG 1 cut(s) 639
BseGI GGATG 6 cut(s) 100, 294, 378, 392, 481, 540
BseLI CCNNNNNNNGG 4 cut(s) 12, 35, 446, 631
BseNI ACTGG 1 cut(s) 29
BseXI GCAGC 2 cut(s) 551, 584
BseYI CCCAGC 1 cut(s) 458
Bsh1236I CGCG 1 cut(s) 641
BshFI GGCC 2 cut(s) 35, 523
BsiHKCI CYCGRG 1 cut(s) 605
BsiSI CCGG 3 cut(s) 36, 285, 396
BslI CCNNNNNNNGG 4 cut(s) 12, 35, 446, 631
BsmI GAATGC 1 cut(s) 247
BsnI GGCC 2 cut(s) 35, 523
BsoBI CYCGRG 1 cut(s) 605
Bsp119I TTCGAA 1 cut(s) 239
Bsp13I TCCGGA 1 cut(s) 395
Bsp143I GATC 4 cut(s) 49, 137, 508, 580
BspACI CCGC 3 cut(s) 234, 639, 641
BspANI GGCC 2 cut(s) 35, 523
BspEI TCCGGA 1 cut(s) 395
BspFNI CGCG 1 cut(s) 641
BspMAI CTGCAG 1 cut(s) 508
BspMI ACCTGC 1 cut(s) 485
BspPI GGATC 1 cut(s) 503
BspT104I TTCGAA 1 cut(s) 239
BsrBI CCGCTC 1 cut(s) 234
BsrI ACTGG 1 cut(s) 29
BssECI CCNNGG 1 cut(s) 639
BssMI GATC 4 cut(s) 49, 137, 508, 580
Bst2UI CCWGG 1 cut(s) 447
Bst6I CTCTTC 1 cut(s) 287
BstBI TTCGAA 1 cut(s) 239
BstC8I GCNNGC 3 cut(s) 213, 282, 643
BstDSI CCRYGG 1 cut(s) 639
BstF5I GGATG 6 cut(s) 100, 294, 378, 392, 481, 540
BstFNI CGCG 1 cut(s) 641
BstHHI GCGC 2 cut(s) 432, 602
BstKTI GATC 4 cut(s) 52, 140, 511, 583
BstMBI GATC 4 cut(s) 49, 137, 508, 580
BstNI CCWGG 1 cut(s) 447
BstNSI RCATGY 1 cut(s) 284
BstSCI CCNGG 2 cut(s) 284, 445
BstSFI CTRYAG 1 cut(s) 504
BstUI CGCG 1 cut(s) 641
BstV1I GCAGC 2 cut(s) 551, 584
BstX2I RGATCY 1 cut(s) 508
BstXI CCANNNNNNTGG 1 cut(s) 466
BstYI RGATCY 1 cut(s) 508
BsuRI GGCC 2 cut(s) 35, 523
BtgI CCRYGG 1 cut(s) 639
BtrI CACGTC 1 cut(s) 26
BtsCI GGATG 6 cut(s) 100, 294, 378, 392, 481, 540
BtsIMutI CAGTG 1 cut(s) 36
BveI ACCTGC 1 cut(s) 485
Cac8I GCNNGC 3 cut(s) 213, 282, 643
CfoI GCGC 2 cut(s) 432, 602
Cfr42I CCGCGG 1 cut(s) 642
Csp6I GTAC 1 cut(s) 226
CviAII CATG 2 cut(s) 281, 472
CviJI RGCY 6 cut(s) 35, 135, 143, 360, 387, 523
CviKI_1 RGCY 6 cut(s) 35, 135, 143, 360, 387, 523
CviQI GTAC 1 cut(s) 226
DpnI GATC 4 cut(s) 51, 139, 510, 582
DpnII GATC 4 cut(s) 49, 137, 508, 580
DraI TTTAAA 1 cut(s) 373
EaeI YGGCCR 1 cut(s) 33
Eam1104I CTCTTC 1 cut(s) 287
EarI CTCTTC 1 cut(s) 287
Eco147I AGGCCT 1 cut(s) 523
Eco88I CYCGRG 1 cut(s) 605
EcoRI GAATTC 1 cut(s) 665
EcoRII CCWGG 1 cut(s) 445
FaeI CATG 2 cut(s) 284, 475
FaiI YATR 8 cut(s) 270, 282, 345, 390, 426, 428, 473, 614
FatI CATG 2 cut(s) 280, 471
FauI CCCGC 1 cut(s) 634
FauNDI CATATG 1 cut(s) 426
Fnu4HI GCNGC 2 cut(s) 540, 573
FokI GGATG 6 cut(s) 107, 301, 365, 379, 488, 547
Fsp4HI GCNGC 2 cut(s) 540, 573
FspAI RTGCGCAY 1 cut(s) 431
FspBI CTAG 1 cut(s) 384
FspI TGCGCA 1 cut(s) 431
GlaI GCGC 2 cut(s) 431, 601
GluI GCNGC 2 cut(s) 540, 573
GsaI CCCAGC 1 cut(s) 462
HaeIII GGCC 2 cut(s) 35, 523
HapII CCGG 3 cut(s) 36, 285, 396
HhaI GCGC 2 cut(s) 432, 602
Hin1II CATG 2 cut(s) 284, 475
Hin6I GCGC 2 cut(s) 430, 600
HinP1I GCGC 2 cut(s) 430, 600
HincII GTYRAC 1 cut(s) 422
HindII GTYRAC 1 cut(s) 422
HpaII CCGG 3 cut(s) 36, 285, 396
HphI GGTGA 1 cut(s) 509
Hpy166II GTNNAC 1 cut(s) 422
Hpy188I TCNGA 1 cut(s) 330
Hpy188III TCNNGA 3 cut(s) 74, 396, 607
Hpy8I GTNNAC 1 cut(s) 422
HpyAV CCTTC 4 cut(s) 153, 169, 407, 525
HpyCH4IV ACGT 1 cut(s) 25
HpyCH4V TGCA 7 cut(s) 117, 154, 203, 245, 365, 494, 506
HpySE526I ACGT 1 cut(s) 25
Hsp92II CATG 2 cut(s) 284, 475
HspAI GCGC 2 cut(s) 430, 600
Kpn2I TCCGGA 1 cut(s) 395
KspI CCGCGG 1 cut(s) 642
Kzo9I GATC 4 cut(s) 49, 137, 508, 580
LpnPI CCDG 9 cut(s) 42, 49, 140, 298, 409, 432, 459, 472, 480
Lsp1109I GCAGC 2 cut(s) 551, 584
MaeI CTAG 1 cut(s) 384
MaeII ACGT 1 cut(s) 25
MalI GATC 4 cut(s) 51, 139, 510, 582
MbiI CCGCTC 1 cut(s) 234
MboI GATC 4 cut(s) 49, 137, 508, 580
MboII GAAGA 2 cut(s) 71, 304
MfeI CAATTG 1 cut(s) 110
MflI RGATCY 1 cut(s) 508
MnlI CCTC 9 cut(s) 91, 324, 349, 392, 478, 513, 534, 625, 655
MroI TCCGGA 1 cut(s) 395
MroXI GAANNNNTTC 1 cut(s) 105
MseI TTAA 2 cut(s) 206, 372
MspA1I CMGCKG 1 cut(s) 641
MspI CCGG 3 cut(s) 36, 285, 396
MspR9I CCNGG 2 cut(s) 286, 447
MunI CAATTG 1 cut(s) 110
Mva1269I GAATGC 1 cut(s) 247
MvaI CCWGG 1 cut(s) 447
MvnI CGCG 1 cut(s) 641
NciI CCSGG 1 cut(s) 286
NdeI CATATG 1 cut(s) 426
NdeII GATC 4 cut(s) 49, 137, 508, 580
NlaIII CATG 2 cut(s) 284, 475
NsbI TGCGCA 1 cut(s) 431
NspI RCATGY 1 cut(s) 284
NspV TTCGAA 1 cut(s) 239
PaeI GCATGC 1 cut(s) 284
PaeR7I CTCGAG 1 cut(s) 605
PaqCI CACCTGC 1 cut(s) 485
PceI AGGCCT 1 cut(s) 523
PctI GAATGC 1 cut(s) 247
PdmI GAANNNNTTC 1 cut(s) 105
PflMI CCANNNNNTGG 1 cut(s) 446
PfoI TCCNGGA 1 cut(s) 445
PkrI GCNGC 2 cut(s) 541, 574
Psp6I CCWGG 1 cut(s) 445
PspFI CCCAGC 1 cut(s) 458
PspGI CCWGG 1 cut(s) 445
PstI CTGCAG 1 cut(s) 508
PsuI RGATCY 1 cut(s) 508
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
SacII CCGCGG 1 cut(s) 642
SaqAI TTAA 2 cut(s) 206, 372
SatI GCNGC 2 cut(s) 540, 573
Sau3AI GATC 4 cut(s) 49, 137, 508, 580
ScrFI CCNGG 2 cut(s) 286, 447
SetI ASST 6 cut(s) 28, 164, 180, 335, 489, 499
SfcI CTRYAG 1 cut(s) 504
Sfr274I CTCGAG 1 cut(s) 605
Sfr303I CCGCGG 1 cut(s) 642
SfuI TTCGAA 1 cut(s) 239
SgrBI CCGCGG 1 cut(s) 642
SlaI CTCGAG 1 cut(s) 605
SmlI CTYRAG 3 cut(s) 72, 525, 605
SmoI CTYRAG 3 cut(s) 72, 525, 605
SphI GCATGC 1 cut(s) 284
SseBI AGGCCT 1 cut(s) 523
SsiI CCGC 3 cut(s) 234, 639, 641
SspMI CTAG 1 cut(s) 384
StuI AGGCCT 1 cut(s) 523
StyD4I CCNGG 2 cut(s) 284, 445
TaiI ACGT 1 cut(s) 28
TaqI TCGA 3 cut(s) 239, 606, 657
TaqII GACCGA 1 cut(s) 20
Tru1I TTAA 2 cut(s) 206, 372
Tru9I TTAA 2 cut(s) 206, 372
TscAI CASTG 1 cut(s) 36
TseI GCWGC 2 cut(s) 539, 572
TspDTI ATGAA 4 cut(s) 72, 276, 305, 426
TspGWI ACGGA 2 cut(s) 107, 571
TspRI CASTG 1 cut(s) 36
Van91I CCANNNNNTGG 1 cut(s) 446
XapI RAATTY 3 cut(s) 168, 451, 665
XceI RCATGY 1 cut(s) 284
XhoI CTCGAG 1 cut(s) 605
XmnI GAANNNNTTC 1 cut(s) 105
XspI CTAG 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.