Rmu_sc0005274.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005274.1
OG0000127
Physical Location & Seq
Reverse (-)
1 .. 1986
1986 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005274.1_g000001.1.cds

Sequence Viewer

Length: 858 bp
atggctgaagaaaggggaaacacaggtccagtggccggacaagagggagatcaaaatgaagatgataatatccaagacaaaaggagatggacggatgaggaagatgttcaattgtgcaacactctcgagagtatagcgaacaaccaaatagaggcaaccgcggacaagaaaaaactcgatgacgaatttgctcgaagtctccaagaggaagagaaaagagcatgtatcctcttgcaaatcgaaatgcgaaaagagcaactcctatttcaagaaaggcaagatcaaattaaagagagggaagagcgaaataaagagagggaagagcgtattatggagattgatacaagtaaaatgacgccaaataaaaagcgttattggtcaagaaaacaaaagaagatagcggagaaagaagatcttgacgagcagccgccaccttctatgggtggatactatccgcaaccaaattttggtggtgcatttccacaaccaaattttggtagtgcatacccacaacctccttaccccggtgcatacccacaaccaccttaccccggtgcatacccacaaccaccttggcccgatggattccaacaacctcccttaaccggtggattcccaccacctcccttcaccggtggattcccacaaccccctgtttctatgggtggatactatccgcaaccaccttaccccgggggatatcctacacaaccacaattttcacctttctctacgggtgattccatcaaccctaaccctaatgatgacccttcaaacgcaaattggattcctagagaggatgaggattatgattatgatttgaataatcagttgataatgcatgttgttaattgtatt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

286

Amino Acids

32.7

Weight (kDa)

4.51

Isoelectric Point (pI)

78.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000127)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02381 FvH4_1g19463 FvH4_1g28433 FvH4_2g16143 FvH4_2g18491 FvH4_2g27711 FvH4_3g19631 FvH4_3g23573 FvH4_4g35743 FvH4_5g23701 FvH4_6g19603 FvH4_6g39781 FvH4_6g40561 FvH4_7g02563 FvH4_7g11472 FvH4_7g17530
rosa_chinensis RchiOBHm_Chr1g0315991 RchiOBHm_Chr1g0318371 RchiOBHm_Chr1g0328341 RchiOBHm_Chr1g0331431 RchiOBHm_Chr1g0344801 RchiOBHm_Chr1g0371461 RchiOBHm_Chr1g0379261 RchiOBHm_Chr2g0117661 RchiOBHm_Chr5g0011791 RchiOBHm_Chr5g0020991 RchiOBHm_Chr5g0060631 RchiOBHm_Chr5g0064181 RchiOBHm_Chr5g0080181 RchiOBHm_Chr6g0254691 RchiOBHm_Chr6g0260101 RchiOBHm_Chr6g0290901 RchiOBHm_Chr7g0201691
rosa_laevigata RLG00000003529 RLG00000009370 RLG00000013568
rosa_multiflora Rmu_co8437743.1_g000001 Rmu_sc0000063.1_g000028 Rmu_sc0000098.1_g000004 Rmu_sc0000166.1_g000028 Rmu_sc0000258.1_g000102 Rmu_sc0000288.1_g000018 Rmu_sc0000333.1_g000043 Rmu_sc0000451.1_g000011 Rmu_sc0000455.1_g000003 Rmu_sc0000479.1_g000002 Rmu_sc0000687.1_g000014 Rmu_sc0000733.1_g000024 Rmu_sc0000736.1_g000001 Rmu_sc0000745.1_g000017 Rmu_sc0000760.1_g000031 Rmu_sc0000776.1_g000044 Rmu_sc0000828.1_g000011 Rmu_sc0000830.1_g000027 Rmu_sc0000857.1_g000025 Rmu_sc0000864.1_g000013 Rmu_sc0001016.1_g000034 Rmu_sc0001016.1_g000035 Rmu_sc0001036.1_g000015 Rmu_sc0001096.1_g000020 Rmu_sc0001145.1_g000023 Rmu_sc0001167.1_g000057 Rmu_sc0001173.1_g000030 Rmu_sc0001260.1_g000006 Rmu_sc0001266.1_g000016 Rmu_sc0001346.1_g000003 Rmu_sc0001346.1_g000004 Rmu_sc0001386.1_g000005 Rmu_sc0001501.1_g000057 Rmu_sc0001565.1_g000058 Rmu_sc0001634.1_g000047 Rmu_sc0001699.1_g000018 Rmu_sc0001700.1_g000041 Rmu_sc0001700.1_g000055 Rmu_sc0001725.1_g000005 Rmu_sc0001823.1_g000005 Rmu_sc0001877.1_g000014 Rmu_sc0001942.1_g000059 Rmu_sc0001966.1_g000033 Rmu_sc0001998.1_g000009 Rmu_sc0002011.1_g000030 Rmu_sc0002147.1_g000007 Rmu_sc0002176.1_g000005 Rmu_sc0002235.1_g000097 Rmu_sc0002324.1_g000002 Rmu_sc0002352.1_g000011 Rmu_sc0002365.1_g000022 Rmu_sc0002548.1_g000007 Rmu_sc0002890.1_g000008 Rmu_sc0002936.1_g000003 Rmu_sc0002955.1_g000016 Rmu_sc0003160.1_g000032 Rmu_sc0003452.1_g000010 Rmu_sc0003490.1_g000023 Rmu_sc0003541.1_g000014 Rmu_sc0003555.1_g000014 Rmu_sc0003759.1_g000008 Rmu_sc0003843.1_g000001 Rmu_sc0003846.1_g000005 Rmu_sc0003890.1_g000019 Rmu_sc0003953.1_g000016 Rmu_sc0003967.1_g000001 Rmu_sc0004068.1_g000002 Rmu_sc0004101.1_g000004 Rmu_sc0004298.1_g000010 Rmu_sc0004507.1_g000008 Rmu_sc0004649.1_g000015 Rmu_sc0004719.1_g000006 Rmu_sc0004751.1_g000012 Rmu_sc0004821.1_g000005 Rmu_sc0004868.1_g000003 Rmu_sc0004876.1_g000023 Rmu_sc0004932.1_g000020 Rmu_sc0005093.1_g000020 Rmu_sc0005132.1_g000019 Rmu_sc0005274.1_g000001 Rmu_sc0005381.1_g000013 Rmu_sc0005693.1_g000009 Rmu_sc0005708.1_g000011 Rmu_sc0005834.1_g000016 Rmu_sc0005966.1_g000017 Rmu_sc0006173.1_g000033 Rmu_sc0006175.1_g000012 Rmu_sc0006590.1_g000004 Rmu_sc0006695.1_g000044 Rmu_sc0007061.1_g000002 Rmu_sc0007069.1_g000023 Rmu_sc0007216.1_g000006 Rmu_sc0008124.1_g000026 Rmu_sc0008148.1_g000028 Rmu_sc0008198.1_g000004 Rmu_sc0008423.1_g000003 Rmu_sc0008441.1_g000011 Rmu_sc0008707.1_g000005 Rmu_sc0009101.1_g000008 Rmu_sc0009240.1_g000039 Rmu_sc0009414.1_g000002 Rmu_sc0009628.1_g000001 Rmu_sc0010048.1_g000007 Rmu_sc0010275.1_g000001 Rmu_sc0010338.1_g000004 Rmu_sc0010659.1_g000005 Rmu_sc0010691.1_g000001 Rmu_sc0011023.1_g000006 Rmu_sc0011533.1_g000001 Rmu_sc0011901.1_g000001 Rmu_sc0012746.1_g000042 Rmu_sc0012773.1_g000005 Rmu_sc0012952.1_g000005 Rmu_sc0014568.1_g000002 Rmu_sc0014568.1_g000003 Rmu_sc0015188.1_g000004 Rmu_sc0019714.1_g000001 Rmu_sc0020148.1_g000003 Rmu_sc0020260.1_g000003 Rmu_sc0021213.1_g000002 Rmu_sc0022616.1_g000001 Rmu_ssc0000084.1_g000006 Rmu_ssc0000116.1_g000017 Rmu_ssc0000116.1_g000018 Rmu_ssc0000189.1_g000037 Rmu_ssc0000330.1_g000009 Rmu_ssc0000359.1_g000004 Rmu_ssc0000366.1_g000031 Rmu_ssc0000386.1_g000056 Rmu_ssc0000387.1_g000006 Rmu_ssc0000400.1_g000065 Rmu_ssc0000440.1_g000006 Rmu_ssc0000452.1_g000014
rosa_roxburghii Rroxscaffold_1G00020180 Rroxscaffold_2G00089580 Rroxscaffold_2G00143500 Rroxscaffold_3G00264360 Rroxscaffold_4G00316450 Rroxscaffold_4G00327050 Rroxscaffold_5G00350260 Rroxscaffold_5G00351750 Rroxscaffold_5G00364680 Rroxscaffold_5G00376220 Rroxscaffold_6G00391720
rosa_rugosa Rorug04G0096700 Rorug05G0284300 Rorug06G0059800 Rorug06G0059900 Rorug06G0060000 Rorug06G0060100 Rorug06G0060200 Rorug06G0127700 Rorug06G0243400
rosa_samantha Rh1AG033000 Rh1AG274600 Rh1DG069700 Rh2DG069900 Rh2DG210700 Rh2DG560100 Rh3AG245500 Rh3BG095400 Rh4AG018100 Rh4AG084900 Rh4AG177900 Rh4CG092300 Rh4CG194700 Rh5BG350600 Rh6BG362400 Rh7DG198200 Rh7DG403500
rosa_wichuraiana Rw1G008260 Rw1G035940 Rw2G027180 Rw4G003470 Rw4G010610 Rw5G037240 Rw6G036490 Rw7G015690 Rw7G028950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 467, 494
AccII CGCG 1 cut(s) 161
AciI CCGC 6 cut(s) 159, 161, 401, 428, 455, 677
AcoI YGGCCR 1 cut(s) 33
AcsI RAATTY 3 cut(s) 185, 463, 490
AcuI CTGAAG 1 cut(s) 27
AcyI GRCGYC 1 cut(s) 356
AgeI ACCGGT 2 cut(s) 605, 632
AgsI TTSAA 4 cut(s) 110, 269, 774, 823
Alw26I GTCTC 1 cut(s) 203
Ama87I CYCGRG 2 cut(s) 125, 692
AoxI GGCC 2 cut(s) 33, 575
ApeKI GCWGC 1 cut(s) 424
ApoI RAATTY 3 cut(s) 185, 463, 490
AsiGI ACCGGT 2 cut(s) 605, 632
Asp700I GAANNNNTTC 1 cut(s) 105
AspS9I GGNCC 2 cut(s) 26, 576
AsuC2I CCSGG 4 cut(s) 525, 552, 693, 694
AsuHPI GGTGA 3 cut(s) 622, 714, 749
AvaI CYCGRG 2 cut(s) 125, 692
AvaII GGWCC 1 cut(s) 26
BbvI GCAGC 1 cut(s) 436
BccI CCATC 3 cut(s) 81, 575, 752
BcgI CGANNNNNNTGC 2 cut(s) 106, 140
BciVI GTATCC 3 cut(s) 236, 440, 662
BcnI CCSGG 4 cut(s) 525, 552, 693, 694
BcoDI GTCTC 1 cut(s) 203
BfaI CTAG 1 cut(s) 792
BfuI GTATCC 3 cut(s) 236, 440, 662
BglII AGATCT 1 cut(s) 412
BisI GCNGC 2 cut(s) 425, 428
BlsI GCNGC 2 cut(s) 426, 429
Bme1390I CCNGG 4 cut(s) 525, 552, 693, 694
Bme18I GGWCC 1 cut(s) 26
BmeT110I CYCGRG 2 cut(s) 125, 692
BmgT120I GGNCC 2 cut(s) 26, 576
BmrFI CCNGG 4 cut(s) 525, 552, 693, 694
BpuMI CCSGG 4 cut(s) 525, 552, 693, 694
BsaHI GRCGYC 1 cut(s) 356
BsaJI CCNNGG 7 cut(s) 159, 523, 550, 572, 691, 692, 693
BsaWI WCCGGW 2 cut(s) 605, 632
Bse118I RCCGGY 2 cut(s) 605, 632
Bse1I ACTGG 1 cut(s) 29
BseDI CCNNGG 7 cut(s) 159, 523, 550, 572, 691, 692, 693
BseGI GGATG 2 cut(s) 100, 805
BseNI ACTGG 1 cut(s) 29
BseXI GCAGC 1 cut(s) 436
Bsh1236I CGCG 1 cut(s) 161
BshFI GGCC 2 cut(s) 35, 577
BshTI ACCGGT 2 cut(s) 605, 632
BsiHKCI CYCGRG 2 cut(s) 125, 692
BsiSI CCGG 6 cut(s) 36, 525, 552, 606, 633, 693
BsmAI GTCTC 1 cut(s) 203
BsnI GGCC 2 cut(s) 35, 577
BsoBI CYCGRG 2 cut(s) 125, 692
Bsp143I GATC 3 cut(s) 49, 280, 412
BspACI CCGC 6 cut(s) 159, 161, 401, 428, 455, 677
BspANI GGCC 2 cut(s) 35, 577
BspFNI CGCG 1 cut(s) 161
BspQI GCTCTTC 2 cut(s) 294, 315
BsrFI RCCGGY 2 cut(s) 605, 632
BsrI ACTGG 1 cut(s) 29
BssAI RCCGGY 2 cut(s) 605, 632
BssECI CCNNGG 7 cut(s) 159, 523, 550, 572, 691, 692, 693
BssMI GATC 3 cut(s) 49, 280, 412
BssNI GRCGYC 1 cut(s) 356
BssT1I CCWWGG 1 cut(s) 572
Bst6I CTCTTC 3 cut(s) 204, 294, 315
BstACI GRCGYC 1 cut(s) 356
BstDSI CCRYGG 1 cut(s) 159
BstF5I GGATG 2 cut(s) 100, 805
BstFNI CGCG 1 cut(s) 161
BstKTI GATC 3 cut(s) 52, 283, 415
BstMAI GTCTC 1 cut(s) 203
BstMBI GATC 3 cut(s) 49, 280, 412
BstMWI GCNNNNNNNGC 1 cut(s) 253
BstNSI RCATGY 2 cut(s) 225, 845
BstSCI CCNGG 4 cut(s) 523, 550, 691, 692
BstUI CGCG 1 cut(s) 161
BstV1I GCAGC 1 cut(s) 436
BstX2I RGATCY 1 cut(s) 412
BstYI RGATCY 1 cut(s) 412
BsuI GTATCC 3 cut(s) 236, 440, 662
BsuRI GGCC 2 cut(s) 35, 577
BtgI CCRYGG 1 cut(s) 159
BtsCI GGATG 2 cut(s) 100, 805
BtsIMutI CAGTG 1 cut(s) 36
Cfr10I RCCGGY 2 cut(s) 605, 632
Cfr13I GGNCC 2 cut(s) 26, 576
Cfr42I CCGCGG 1 cut(s) 162
Cfr9I CCCGGG 1 cut(s) 692
CseI GACGC 1 cut(s) 364
CspAI ACCGGT 2 cut(s) 605, 632
CviAII CATG 2 cut(s) 222, 842
CviJI RGCY 4 cut(s) 5, 35, 427, 577
CviKI_1 RGCY 4 cut(s) 5, 35, 427, 577
DpnI GATC 3 cut(s) 51, 282, 414
DpnII GATC 3 cut(s) 49, 280, 412
EaeI YGGCCR 1 cut(s) 33
Eam1104I CTCTTC 3 cut(s) 204, 294, 315
EarI CTCTTC 3 cut(s) 204, 294, 315
Eco130I CCWWGG 1 cut(s) 572
Eco32I GATATC 1 cut(s) 701
Eco47I GGWCC 1 cut(s) 26
Eco57I CTGAAG 1 cut(s) 27
Eco88I CYCGRG 2 cut(s) 125, 692
EcoRV GATATC 1 cut(s) 701
EcoT14I CCWWGG 1 cut(s) 572
EcoT22I ATGCAT 1 cut(s) 843
ErhI CCWWGG 1 cut(s) 572
FaeI CATG 2 cut(s) 225, 845
FalI AAGNNNNNCTT 2 cut(s) 399, 431
FatI CATG 2 cut(s) 221, 841
Fnu4HI GCNGC 2 cut(s) 425, 428
FokI GGATG 2 cut(s) 107, 812
Fsp4HI GCNGC 2 cut(s) 425, 428
FspBI CTAG 1 cut(s) 792
GluI GCNGC 2 cut(s) 425, 428
HaeIII GGCC 2 cut(s) 35, 577
HapII CCGG 6 cut(s) 36, 525, 552, 606, 633, 693
HgaI GACGC 1 cut(s) 364
Hin1I GRCGYC 1 cut(s) 356
Hin1II CATG 2 cut(s) 225, 845
HinfI GANTC 5 cut(s) 585, 612, 639, 740, 787
HpaII CCGG 6 cut(s) 36, 525, 552, 606, 633, 693
HphI GGTGA 3 cut(s) 622, 714, 749
Hpy188III TCNNGA 5 cut(s) 125, 127, 269, 381, 416
HpyAV CCTTC 3 cut(s) 444, 637, 780
HpyCH4V TGCA 7 cut(s) 117, 235, 476, 503, 530, 557, 841
HpyF10VI GCNNNNNNNGC 1 cut(s) 253
Hsp92I GRCGYC 1 cut(s) 356
Hsp92II CATG 2 cut(s) 225, 845
KspI CCGCGG 1 cut(s) 162
Kzo9I GATC 3 cut(s) 49, 280, 412
LguI GCTCTTC 2 cut(s) 294, 315
LpnPI CCDG 9 cut(s) 9, 42, 49, 538, 565, 619, 646, 666, 706
Lsp1109I GCAGC 1 cut(s) 436
MaeI CTAG 1 cut(s) 792
MalI GATC 3 cut(s) 51, 282, 414
MboI GATC 3 cut(s) 49, 280, 412
MboII GAAGA 8 cut(s) 20, 71, 113, 221, 311, 332, 406, 422
MfeI CAATTG 1 cut(s) 110
MflI RGATCY 1 cut(s) 412
MluCI AATT 8 cut(s) 110, 185, 285, 463, 490, 716, 781, 850
MmeI TCCRAC 1 cut(s) 613
Mph1103I ATGCAT 1 cut(s) 843
MroXI GAANNNNTTC 1 cut(s) 105
MseI TTAA 3 cut(s) 288, 602, 849
MspA1I CMGCKG 1 cut(s) 161
MspI CCGG 6 cut(s) 36, 525, 552, 606, 633, 693
MspR9I CCNGG 4 cut(s) 525, 552, 693, 694
MunI CAATTG 1 cut(s) 110
MvnI CGCG 1 cut(s) 161
MwoI GCNNNNNNNGC 1 cut(s) 253
NciI CCSGG 4 cut(s) 525, 552, 693, 694
NdeII GATC 3 cut(s) 49, 280, 412
NlaIII CATG 2 cut(s) 225, 845
NsiI ATGCAT 1 cut(s) 843
NspI RCATGY 2 cut(s) 225, 845
PaeR7I CTCGAG 1 cut(s) 125
PciSI GCTCTTC 2 cut(s) 294, 315
PdmI GAANNNNTTC 1 cut(s) 105
PfeI GAWTC 5 cut(s) 585, 612, 639, 740, 787
PflMI CCANNNNNTGG 2 cut(s) 467, 494
PinAI ACCGGT 2 cut(s) 605, 632
PkrI GCNGC 2 cut(s) 426, 429
PspPI GGNCC 2 cut(s) 26, 576
PsuI RGATCY 1 cut(s) 412
SacII CCGCGG 1 cut(s) 162
SapI GCTCTTC 2 cut(s) 294, 315
SaqAI TTAA 3 cut(s) 288, 602, 849
SatI GCNGC 2 cut(s) 425, 428
Sau3AI GATC 3 cut(s) 49, 280, 412
Sau96I GGNCC 2 cut(s) 26, 576
ScrFI CCNGG 4 cut(s) 525, 552, 693, 694
SetI ASST 9 cut(s) 28, 436, 517, 547, 574, 598, 625, 688, 727
Sfr274I CTCGAG 1 cut(s) 125
Sfr303I CCGCGG 1 cut(s) 162
SgrAI CRCCGGYG 1 cut(s) 632
SgrBI CCGCGG 1 cut(s) 162
SinI GGWCC 1 cut(s) 26
SlaI CTCGAG 1 cut(s) 125
SmaI CCCGGG 1 cut(s) 694
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
Sse9I AATT 8 cut(s) 110, 185, 285, 463, 490, 716, 781, 850
SsiI CCGC 6 cut(s) 159, 161, 401, 428, 455, 677
SspMI CTAG 1 cut(s) 792
StyD4I CCNGG 4 cut(s) 523, 550, 691, 692
StyI CCWWGG 1 cut(s) 572
TaqI TCGA 4 cut(s) 126, 177, 193, 240
TasI AATT 8 cut(s) 110, 185, 285, 463, 490, 716, 781, 850
TauI GCSGC 1 cut(s) 430
TfiI GAWTC 5 cut(s) 585, 612, 639, 740, 787
Tru1I TTAA 3 cut(s) 288, 602, 849
Tru9I TTAA 3 cut(s) 288, 602, 849
TscAI CASTG 1 cut(s) 36
TseI GCWGC 1 cut(s) 424
TspDTI ATGAA 1 cut(s) 72
TspGWI ACGGA 1 cut(s) 107
TspMI CCCGGG 1 cut(s) 692
TspRI CASTG 1 cut(s) 36
Van91I CCANNNNNTGG 2 cut(s) 467, 494
VpaK11BI GGWCC 1 cut(s) 26
XapI RAATTY 3 cut(s) 185, 463, 490
XceI RCATGY 2 cut(s) 225, 845
XcmI CCANNNNNNNNNTGG 1 cut(s) 570
XhoI CTCGAG 1 cut(s) 125
XmaI CCCGGG 1 cut(s) 692
XmnI GAANNNNTTC 1 cut(s) 105
XspI CTAG 1 cut(s) 792
Zsp2I ATGCAT 1 cut(s) 843
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.