FvH4_7g11472

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000127
Physical Location & Seq
Reverse (-)
10620369 .. 10621211
843 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g11472.t1

Sequence Viewer

Length: 405 bp
ATGGCCGATAGATCTACTTCCGATAGAAAACTTTGGGAAGCCGATGAAGACCTCCAATTGTGCAAGCCGTGGAGATTTGTTAGCCACGATGCGGAAAAGGGCACCGATCAAAAGAAAGCGCAATTTTGGGATAATGTTCTCAAGCACTACTTCGACAATTTTCCGGATGCTTACCCTCGAGCAACAAGTGCAATGATAGGGAGTGATGAGGTACCCCCGAATCCAAATGTGAGGCCTATTGGAAGGAAAGCAACAAAAGAAGCCGCTCGGAAAGGAAAAAAGGCGGCCAAAGATGCGTGTCCCATGACATCCGTTGTTGTCACGATTGCAACCAACCAATCATCAATATTGCAATCGAGGGAGAAACGTGACGAGGCATACGCAAAACAATTCCAAGAGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

135

Amino Acids

15.23

Weight (kDa)

8.87

Isoelectric Point (pI)

43.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000127)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02381 FvH4_1g19463 FvH4_1g28433 FvH4_2g16143 FvH4_2g18491 FvH4_2g27711 FvH4_3g19631 FvH4_3g23573 FvH4_4g35743 FvH4_5g23701 FvH4_6g19603 FvH4_6g39781 FvH4_6g40561 FvH4_7g02563 FvH4_7g11472 FvH4_7g17530
rosa_chinensis RchiOBHm_Chr1g0315991 RchiOBHm_Chr1g0318371 RchiOBHm_Chr1g0328341 RchiOBHm_Chr1g0331431 RchiOBHm_Chr1g0344801 RchiOBHm_Chr1g0371461 RchiOBHm_Chr1g0379261 RchiOBHm_Chr2g0117661 RchiOBHm_Chr5g0011791 RchiOBHm_Chr5g0020991 RchiOBHm_Chr5g0060631 RchiOBHm_Chr5g0064181 RchiOBHm_Chr5g0080181 RchiOBHm_Chr6g0254691 RchiOBHm_Chr6g0260101 RchiOBHm_Chr6g0290901 RchiOBHm_Chr7g0201691
rosa_laevigata RLG00000003529 RLG00000009370 RLG00000013568
rosa_multiflora Rmu_co8437743.1_g000001 Rmu_sc0000063.1_g000028 Rmu_sc0000098.1_g000004 Rmu_sc0000166.1_g000028 Rmu_sc0000258.1_g000102 Rmu_sc0000288.1_g000018 Rmu_sc0000333.1_g000043 Rmu_sc0000451.1_g000011 Rmu_sc0000455.1_g000003 Rmu_sc0000479.1_g000002 Rmu_sc0000687.1_g000014 Rmu_sc0000733.1_g000024 Rmu_sc0000736.1_g000001 Rmu_sc0000745.1_g000017 Rmu_sc0000760.1_g000031 Rmu_sc0000776.1_g000044 Rmu_sc0000828.1_g000011 Rmu_sc0000830.1_g000027 Rmu_sc0000857.1_g000025 Rmu_sc0000864.1_g000013 Rmu_sc0001016.1_g000034 Rmu_sc0001016.1_g000035 Rmu_sc0001036.1_g000015 Rmu_sc0001096.1_g000020 Rmu_sc0001145.1_g000023 Rmu_sc0001167.1_g000057 Rmu_sc0001173.1_g000030 Rmu_sc0001260.1_g000006 Rmu_sc0001266.1_g000016 Rmu_sc0001346.1_g000003 Rmu_sc0001346.1_g000004 Rmu_sc0001386.1_g000005 Rmu_sc0001501.1_g000057 Rmu_sc0001565.1_g000058 Rmu_sc0001634.1_g000047 Rmu_sc0001699.1_g000018 Rmu_sc0001700.1_g000041 Rmu_sc0001700.1_g000055 Rmu_sc0001725.1_g000005 Rmu_sc0001823.1_g000005 Rmu_sc0001877.1_g000014 Rmu_sc0001942.1_g000059 Rmu_sc0001966.1_g000033 Rmu_sc0001998.1_g000009 Rmu_sc0002011.1_g000030 Rmu_sc0002147.1_g000007 Rmu_sc0002176.1_g000005 Rmu_sc0002235.1_g000097 Rmu_sc0002324.1_g000002 Rmu_sc0002352.1_g000011 Rmu_sc0002365.1_g000022 Rmu_sc0002548.1_g000007 Rmu_sc0002890.1_g000008 Rmu_sc0002936.1_g000003 Rmu_sc0002955.1_g000016 Rmu_sc0003160.1_g000032 Rmu_sc0003452.1_g000010 Rmu_sc0003490.1_g000023 Rmu_sc0003541.1_g000014 Rmu_sc0003555.1_g000014 Rmu_sc0003759.1_g000008 Rmu_sc0003843.1_g000001 Rmu_sc0003846.1_g000005 Rmu_sc0003890.1_g000019 Rmu_sc0003953.1_g000016 Rmu_sc0003967.1_g000001 Rmu_sc0004068.1_g000002 Rmu_sc0004101.1_g000004 Rmu_sc0004298.1_g000010 Rmu_sc0004507.1_g000008 Rmu_sc0004649.1_g000015 Rmu_sc0004719.1_g000006 Rmu_sc0004751.1_g000012 Rmu_sc0004821.1_g000005 Rmu_sc0004868.1_g000003 Rmu_sc0004876.1_g000023 Rmu_sc0004932.1_g000020 Rmu_sc0005093.1_g000020 Rmu_sc0005132.1_g000019 Rmu_sc0005274.1_g000001 Rmu_sc0005381.1_g000013 Rmu_sc0005693.1_g000009 Rmu_sc0005708.1_g000011 Rmu_sc0005834.1_g000016 Rmu_sc0005966.1_g000017 Rmu_sc0006173.1_g000033 Rmu_sc0006175.1_g000012 Rmu_sc0006590.1_g000004 Rmu_sc0006695.1_g000044 Rmu_sc0007061.1_g000002 Rmu_sc0007069.1_g000023 Rmu_sc0007216.1_g000006 Rmu_sc0008124.1_g000026 Rmu_sc0008148.1_g000028 Rmu_sc0008198.1_g000004 Rmu_sc0008423.1_g000003 Rmu_sc0008441.1_g000011 Rmu_sc0008707.1_g000005 Rmu_sc0009101.1_g000008 Rmu_sc0009240.1_g000039 Rmu_sc0009414.1_g000002 Rmu_sc0009628.1_g000001 Rmu_sc0010048.1_g000007 Rmu_sc0010275.1_g000001 Rmu_sc0010338.1_g000004 Rmu_sc0010659.1_g000005 Rmu_sc0010691.1_g000001 Rmu_sc0011023.1_g000006 Rmu_sc0011533.1_g000001 Rmu_sc0011901.1_g000001 Rmu_sc0012746.1_g000042 Rmu_sc0012773.1_g000005 Rmu_sc0012952.1_g000005 Rmu_sc0014568.1_g000002 Rmu_sc0014568.1_g000003 Rmu_sc0015188.1_g000004 Rmu_sc0019714.1_g000001 Rmu_sc0020148.1_g000003 Rmu_sc0020260.1_g000003 Rmu_sc0021213.1_g000002 Rmu_sc0022616.1_g000001 Rmu_ssc0000084.1_g000006 Rmu_ssc0000116.1_g000017 Rmu_ssc0000116.1_g000018 Rmu_ssc0000189.1_g000037 Rmu_ssc0000330.1_g000009 Rmu_ssc0000359.1_g000004 Rmu_ssc0000366.1_g000031 Rmu_ssc0000386.1_g000056 Rmu_ssc0000387.1_g000006 Rmu_ssc0000400.1_g000065 Rmu_ssc0000440.1_g000006 Rmu_ssc0000452.1_g000014
rosa_roxburghii Rroxscaffold_1G00020180 Rroxscaffold_2G00089580 Rroxscaffold_2G00143500 Rroxscaffold_3G00264360 Rroxscaffold_4G00316450 Rroxscaffold_4G00327050 Rroxscaffold_5G00350260 Rroxscaffold_5G00351750 Rroxscaffold_5G00364680 Rroxscaffold_5G00376220 Rroxscaffold_6G00391720
rosa_rugosa Rorug04G0096700 Rorug05G0284300 Rorug06G0059800 Rorug06G0059900 Rorug06G0060000 Rorug06G0060100 Rorug06G0060200 Rorug06G0127700 Rorug06G0243400
rosa_samantha Rh1AG033000 Rh1AG274600 Rh1DG069700 Rh2DG069900 Rh2DG210700 Rh2DG560100 Rh3AG245500 Rh3BG095400 Rh4AG018100 Rh4AG084900 Rh4AG177900 Rh4CG092300 Rh4CG194700 Rh5BG350600 Rh6BG362400 Rh7DG198200 Rh7DG403500
rosa_wichuraiana Rw1G008260 Rw1G035940 Rw2G027180 Rw4G003470 Rw4G010610 Rw5G037240 Rw6G036490 Rw7G015690 Rw7G028950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 211
AccB1I GGYRCC 2 cut(s) 101, 211
AccBSI CCGCTC 1 cut(s) 266
AccIII TCCGGA 1 cut(s) 163
AciI CCGC 3 cut(s) 92, 264, 284
AcoI YGGCCR 2 cut(s) 3, 285
AfaI GTAC 1 cut(s) 213
AfiI CCNNNNNNNGG 1 cut(s) 91
Ama87I CYCGRG 1 cut(s) 177
Aor13HI TCCGGA 1 cut(s) 163
AoxI GGCC 3 cut(s) 3, 233, 285
Asp718I GGTACC 1 cut(s) 211
AspLEI GCGC 1 cut(s) 121
AvaI CYCGRG 1 cut(s) 177
BaeGI GKGCMC 1 cut(s) 104
BanI GGYRCC 2 cut(s) 101, 211
BbsI GAAGAC 1 cut(s) 54
BceAI ACGGC 1 cut(s) 52
BglII AGATCT 1 cut(s) 11
BisI GCNGC 2 cut(s) 264, 285
BlsI GCNGC 2 cut(s) 265, 286
BmeT110I CYCGRG 1 cut(s) 177
BmiI GGNNCC 2 cut(s) 103, 213
BmsI GCATC 3 cut(s) 79, 157, 283
BpiI GAAGAC 1 cut(s) 54
BpuEI CTTGAG 1 cut(s) 125
BsaJI CCNNGG 1 cut(s) 68
BsaWI WCCGGW 1 cut(s) 163
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse3DI GCAATG 1 cut(s) 198
BseAI TCCGGA 1 cut(s) 163
BseDI CCNNGG 1 cut(s) 68
BseGI GGATG 2 cut(s) 172, 308
BseLI CCNNNNNNNGG 1 cut(s) 91
BseMI GCAATG 1 cut(s) 198
BseSI GKGCMC 1 cut(s) 104
BshFI GGCC 3 cut(s) 5, 235, 287
BshNI GGYRCC 2 cut(s) 101, 211
BsiHKCI CYCGRG 1 cut(s) 177
BsiSI CCGG 1 cut(s) 164
BslFI GGGAC 1 cut(s) 285
BslI CCNNNNNNNGG 1 cut(s) 91
BsmFI GGGAC 1 cut(s) 285
BsnI GGCC 3 cut(s) 5, 235, 287
BsoBI CYCGRG 1 cut(s) 177
Bsp1286I GDGCHC 1 cut(s) 104
Bsp13I TCCGGA 1 cut(s) 163
Bsp143I GATC 2 cut(s) 11, 106
BspACI CCGC 3 cut(s) 92, 264, 284
BspANI GGCC 3 cut(s) 5, 235, 287
BspEI TCCGGA 1 cut(s) 163
BspLI GGNNCC 2 cut(s) 103, 213
BspT107I GGYRCC 2 cut(s) 101, 211
BsrBI CCGCTC 1 cut(s) 266
BsrDI GCAATG 1 cut(s) 198
BssECI CCNNGG 1 cut(s) 68
BssMI GATC 2 cut(s) 11, 106
BstAPI GCANNNNNTGC 1 cut(s) 188
BstC8I GCNNGC 1 cut(s) 65
BstDSI CCRYGG 1 cut(s) 68
BstF5I GGATG 2 cut(s) 172, 308
BstHHI GCGC 1 cut(s) 121
BstKTI GATC 2 cut(s) 14, 109
BstMBI GATC 2 cut(s) 11, 106
BstMWI GCNNNNNNNGC 2 cut(s) 188, 293
BstSLI GKGCMC 1 cut(s) 104
BstV2I GAAGAC 1 cut(s) 54
BstX2I RGATCY 1 cut(s) 11
BstYI RGATCY 1 cut(s) 11
BsuRI GGCC 3 cut(s) 5, 235, 287
BtgI CCRYGG 1 cut(s) 68
BtsCI GGATG 2 cut(s) 172, 308
Cac8I GCNNGC 1 cut(s) 65
CfoI GCGC 1 cut(s) 121
Csp6I GTAC 1 cut(s) 212
CviAII CATG 1 cut(s) 304
CviJI RGCY 7 cut(s) 5, 41, 67, 84, 235, 263, 287
CviKI_1 RGCY 7 cut(s) 5, 41, 67, 84, 235, 263, 287
CviQI GTAC 1 cut(s) 212
DpnI GATC 2 cut(s) 13, 108
DpnII GATC 2 cut(s) 11, 106
EaeI YGGCCR 2 cut(s) 3, 285
Eco147I AGGCCT 1 cut(s) 235
Eco88I CYCGRG 1 cut(s) 177
FaeI CATG 1 cut(s) 307
FaiI YATR 2 cut(s) 305, 379
FalI AAGNNNNNCTT 2 cut(s) 134, 166
FaqI GGGAC 1 cut(s) 285
FatI CATG 1 cut(s) 303
Fnu4HI GCNGC 2 cut(s) 264, 285
FokI GGATG 2 cut(s) 179, 295
Fsp4HI GCNGC 2 cut(s) 264, 285
GlaI GCGC 1 cut(s) 120
GluI GCNGC 2 cut(s) 264, 285
HaeIII GGCC 3 cut(s) 5, 235, 287
HapII CCGG 1 cut(s) 164
HhaI GCGC 1 cut(s) 121
Hin1II CATG 1 cut(s) 307
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HinfI GANTC 1 cut(s) 220
HpaII CCGG 1 cut(s) 164
Hpy188I TCNGA 2 cut(s) 22, 270
Hpy188III TCNNGA 2 cut(s) 164, 322
HpyAV CCTTC 1 cut(s) 237
HpyCH4IV ACGT 1 cut(s) 367
HpyCH4V TGCA 4 cut(s) 63, 191, 329, 352
HpyF10VI GCNNNNNNNGC 2 cut(s) 188, 293
HpySE526I ACGT 1 cut(s) 367
Hsp92II CATG 1 cut(s) 307
HspAI GCGC 1 cut(s) 119
Kpn2I TCCGGA 1 cut(s) 163
KpnI GGTACC 1 cut(s) 215
Kzo9I GATC 2 cut(s) 11, 106
LpnPI CCDG 1 cut(s) 177
LweI GCATC 3 cut(s) 79, 157, 283
MaeII ACGT 1 cut(s) 367
MaeIII GTNAC 2 cut(s) 319, 368
MalI GATC 2 cut(s) 13, 108
MbiI CCGCTC 1 cut(s) 266
MboI GATC 2 cut(s) 11, 106
MboII GAAGA 1 cut(s) 59
MfeI CAATTG 1 cut(s) 56
MflI RGATCY 1 cut(s) 11
MhlI GDGCHC 1 cut(s) 104
MluCI AATT 4 cut(s) 56, 122, 157, 389
MnlI CCTC 6 cut(s) 62, 186, 202, 225, 351, 367
MroI TCCGGA 1 cut(s) 163
MspI CCGG 1 cut(s) 164
MunI CAATTG 1 cut(s) 56
MwoI GCNNNNNNNGC 2 cut(s) 188, 293
NdeII GATC 2 cut(s) 11, 106
NlaIII CATG 1 cut(s) 307
NlaIV GGNNCC 2 cut(s) 103, 213
NmuCI GTSAC 2 cut(s) 319, 368
PaeR7I CTCGAG 1 cut(s) 177
PceI AGGCCT 1 cut(s) 235
PfeI GAWTC 1 cut(s) 220
PkrI GCNGC 2 cut(s) 265, 286
PspN4I GGNNCC 2 cut(s) 103, 213
PspXI VCTCGAGB 1 cut(s) 177
PsuI RGATCY 1 cut(s) 11
RsaI GTAC 1 cut(s) 213
RsaNI GTAC 1 cut(s) 212
SatI GCNGC 2 cut(s) 264, 285
Sau3AI GATC 2 cut(s) 11, 106
SduI GDGCHC 1 cut(s) 104
SetI ASST 3 cut(s) 54, 213, 370
SfaNI GCATC 3 cut(s) 79, 157, 283
Sfr274I CTCGAG 1 cut(s) 177
SlaI CTCGAG 1 cut(s) 177
SmlI CTYRAG 2 cut(s) 140, 177
SmoI CTYRAG 2 cut(s) 140, 177
Sse9I AATT 4 cut(s) 56, 122, 157, 389
SseBI AGGCCT 1 cut(s) 235
SsiI CCGC 3 cut(s) 92, 264, 284
SspI AATATT 1 cut(s) 348
StuI AGGCCT 1 cut(s) 235
TaiI ACGT 1 cut(s) 370
TaqI TCGA 3 cut(s) 153, 178, 356
TasI AATT 4 cut(s) 56, 122, 157, 389
TauI GCSGC 2 cut(s) 266, 287
TfiI GAWTC 1 cut(s) 220
TseFI GTSAC 2 cut(s) 319, 368
Tsp45I GTSAC 2 cut(s) 319, 368
TspDTI ATGAA 1 cut(s) 60
TspGWI ACGGA 1 cut(s) 301
XhoI CTCGAG 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.