Rmu_sc0005708.1_g000011

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005708.1
OG0000127
Physical Location & Seq
Forward (+)
51643 .. 56419
4777 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005708.1_g000011.1.cds

Sequence Viewer

Length: 657 bp
atggctgaagaaaggggaaacacaggtccagtggccggacaagagggagatcaaaatgaagatgataatattcaagacaaaaggagatggacggatgaggaagatgttcaattgtgcaagtcttggaaaattattgggcaagatccggctgtgggcacaaatcagaaaaacaacgacttatggatgcgtgtgaggcgacattttgtcgcaaattggccccaaagccgatcagcttcctctttgcaaggaaggtggaaaattttgaaggttgaactctttgagtggcattgtgcattaaggcaagtaaaaaattggtacaagagcgagatggcagctaagaatgccaagagagggataaagaggttcttagaacaatctacaggtgatcgagttgatcaagaaaaatctgaatgtagtcatgtcagatcaaagagattgaaagcaatgcttgatccagacaatgctggaggatctaatgaatgtcagaatgggatgcaattgagagataatgatgaaaatgctgctcaaggagagtcggagcatttcaaggaaaccaattcatgtaaatttgtacaaactgatacggtcacaggtcaatgctcacatgcatatggtcaggcatcatatcaaaagaatagagaaggtattttgtgctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

218

Amino Acids

24.97

Weight (kDa)

6.95

Isoelectric Point (pI)

52.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000127)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02381 FvH4_1g19463 FvH4_1g28433 FvH4_2g16143 FvH4_2g18491 FvH4_2g27711 FvH4_3g19631 FvH4_3g23573 FvH4_4g35743 FvH4_5g23701 FvH4_6g19603 FvH4_6g39781 FvH4_6g40561 FvH4_7g02563 FvH4_7g11472 FvH4_7g17530
rosa_chinensis RchiOBHm_Chr1g0315991 RchiOBHm_Chr1g0318371 RchiOBHm_Chr1g0328341 RchiOBHm_Chr1g0331431 RchiOBHm_Chr1g0344801 RchiOBHm_Chr1g0371461 RchiOBHm_Chr1g0379261 RchiOBHm_Chr2g0117661 RchiOBHm_Chr5g0011791 RchiOBHm_Chr5g0020991 RchiOBHm_Chr5g0060631 RchiOBHm_Chr5g0064181 RchiOBHm_Chr5g0080181 RchiOBHm_Chr6g0254691 RchiOBHm_Chr6g0260101 RchiOBHm_Chr6g0290901 RchiOBHm_Chr7g0201691
rosa_laevigata RLG00000003529 RLG00000009370 RLG00000013568
rosa_multiflora Rmu_co8437743.1_g000001 Rmu_sc0000063.1_g000028 Rmu_sc0000098.1_g000004 Rmu_sc0000166.1_g000028 Rmu_sc0000258.1_g000102 Rmu_sc0000288.1_g000018 Rmu_sc0000333.1_g000043 Rmu_sc0000451.1_g000011 Rmu_sc0000455.1_g000003 Rmu_sc0000479.1_g000002 Rmu_sc0000687.1_g000014 Rmu_sc0000733.1_g000024 Rmu_sc0000736.1_g000001 Rmu_sc0000745.1_g000017 Rmu_sc0000760.1_g000031 Rmu_sc0000776.1_g000044 Rmu_sc0000828.1_g000011 Rmu_sc0000830.1_g000027 Rmu_sc0000857.1_g000025 Rmu_sc0000864.1_g000013 Rmu_sc0001016.1_g000034 Rmu_sc0001016.1_g000035 Rmu_sc0001036.1_g000015 Rmu_sc0001096.1_g000020 Rmu_sc0001145.1_g000023 Rmu_sc0001167.1_g000057 Rmu_sc0001173.1_g000030 Rmu_sc0001260.1_g000006 Rmu_sc0001266.1_g000016 Rmu_sc0001346.1_g000003 Rmu_sc0001346.1_g000004 Rmu_sc0001386.1_g000005 Rmu_sc0001501.1_g000057 Rmu_sc0001565.1_g000058 Rmu_sc0001634.1_g000047 Rmu_sc0001699.1_g000018 Rmu_sc0001700.1_g000041 Rmu_sc0001700.1_g000055 Rmu_sc0001725.1_g000005 Rmu_sc0001823.1_g000005 Rmu_sc0001877.1_g000014 Rmu_sc0001942.1_g000059 Rmu_sc0001966.1_g000033 Rmu_sc0001998.1_g000009 Rmu_sc0002011.1_g000030 Rmu_sc0002147.1_g000007 Rmu_sc0002176.1_g000005 Rmu_sc0002235.1_g000097 Rmu_sc0002324.1_g000002 Rmu_sc0002352.1_g000011 Rmu_sc0002365.1_g000022 Rmu_sc0002548.1_g000007 Rmu_sc0002890.1_g000008 Rmu_sc0002936.1_g000003 Rmu_sc0002955.1_g000016 Rmu_sc0003160.1_g000032 Rmu_sc0003452.1_g000010 Rmu_sc0003490.1_g000023 Rmu_sc0003541.1_g000014 Rmu_sc0003555.1_g000014 Rmu_sc0003759.1_g000008 Rmu_sc0003843.1_g000001 Rmu_sc0003846.1_g000005 Rmu_sc0003890.1_g000019 Rmu_sc0003953.1_g000016 Rmu_sc0003967.1_g000001 Rmu_sc0004068.1_g000002 Rmu_sc0004101.1_g000004 Rmu_sc0004298.1_g000010 Rmu_sc0004507.1_g000008 Rmu_sc0004649.1_g000015 Rmu_sc0004719.1_g000006 Rmu_sc0004751.1_g000012 Rmu_sc0004821.1_g000005 Rmu_sc0004868.1_g000003 Rmu_sc0004876.1_g000023 Rmu_sc0004932.1_g000020 Rmu_sc0005093.1_g000020 Rmu_sc0005132.1_g000019 Rmu_sc0005274.1_g000001 Rmu_sc0005381.1_g000013 Rmu_sc0005693.1_g000009 Rmu_sc0005708.1_g000011 Rmu_sc0005834.1_g000016 Rmu_sc0005966.1_g000017 Rmu_sc0006173.1_g000033 Rmu_sc0006175.1_g000012 Rmu_sc0006590.1_g000004 Rmu_sc0006695.1_g000044 Rmu_sc0007061.1_g000002 Rmu_sc0007069.1_g000023 Rmu_sc0007216.1_g000006 Rmu_sc0008124.1_g000026 Rmu_sc0008148.1_g000028 Rmu_sc0008198.1_g000004 Rmu_sc0008423.1_g000003 Rmu_sc0008441.1_g000011 Rmu_sc0008707.1_g000005 Rmu_sc0009101.1_g000008 Rmu_sc0009240.1_g000039 Rmu_sc0009414.1_g000002 Rmu_sc0009628.1_g000001 Rmu_sc0010048.1_g000007 Rmu_sc0010275.1_g000001 Rmu_sc0010338.1_g000004 Rmu_sc0010659.1_g000005 Rmu_sc0010691.1_g000001 Rmu_sc0011023.1_g000006 Rmu_sc0011533.1_g000001 Rmu_sc0011901.1_g000001 Rmu_sc0012746.1_g000042 Rmu_sc0012773.1_g000005 Rmu_sc0012952.1_g000005 Rmu_sc0014568.1_g000002 Rmu_sc0014568.1_g000003 Rmu_sc0015188.1_g000004 Rmu_sc0019714.1_g000001 Rmu_sc0020148.1_g000003 Rmu_sc0020260.1_g000003 Rmu_sc0021213.1_g000002 Rmu_sc0022616.1_g000001 Rmu_ssc0000084.1_g000006 Rmu_ssc0000116.1_g000017 Rmu_ssc0000116.1_g000018 Rmu_ssc0000189.1_g000037 Rmu_ssc0000330.1_g000009 Rmu_ssc0000359.1_g000004 Rmu_ssc0000366.1_g000031 Rmu_ssc0000386.1_g000056 Rmu_ssc0000387.1_g000006 Rmu_ssc0000400.1_g000065 Rmu_ssc0000440.1_g000006 Rmu_ssc0000452.1_g000014
rosa_roxburghii Rroxscaffold_1G00020180 Rroxscaffold_2G00089580 Rroxscaffold_2G00143500 Rroxscaffold_3G00264360 Rroxscaffold_4G00316450 Rroxscaffold_4G00327050 Rroxscaffold_5G00350260 Rroxscaffold_5G00351750 Rroxscaffold_5G00364680 Rroxscaffold_5G00376220 Rroxscaffold_6G00391720
rosa_rugosa Rorug04G0096700 Rorug05G0284300 Rorug06G0059800 Rorug06G0059900 Rorug06G0060000 Rorug06G0060100 Rorug06G0060200 Rorug06G0127700 Rorug06G0243400
rosa_samantha Rh1AG033000 Rh1AG274600 Rh1DG069700 Rh2DG069900 Rh2DG210700 Rh2DG560100 Rh3AG245500 Rh3BG095400 Rh4AG018100 Rh4AG084900 Rh4AG177900 Rh4CG092300 Rh4CG194700 Rh5BG350600 Rh6BG362400 Rh7DG198200 Rh7DG403500
rosa_wichuraiana Rw1G008260 Rw1G035940 Rw2G027180 Rw4G003470 Rw4G010610 Rw5G037240 Rw6G036490 Rw7G015690 Rw7G028950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 137, 446, 478
AcoI YGGCCR 1 cut(s) 33
AcsI RAATTY 2 cut(s) 258, 566
AcuI CTGAAG 1 cut(s) 27
AfaI GTAC 2 cut(s) 317, 573
AfiI CCNNNNNNNGG 3 cut(s) 35, 152, 351
AgsI TTSAA 6 cut(s) 74, 110, 265, 272, 439, 547
AhdI GACNNNNNGTC 1 cut(s) 203
AluBI AGCT 2 cut(s) 233, 335
AluI AGCT 2 cut(s) 233, 335
AlwI GGATC 3 cut(s) 137, 446, 478
AoxI GGCC 2 cut(s) 33, 215
ApeKI GCWGC 2 cut(s) 332, 521
ApoI RAATTY 2 cut(s) 258, 566
Asp700I GAANNNNTTC 1 cut(s) 105
AspS9I GGNCC 2 cut(s) 26, 216
AsuHPI GGTGA 1 cut(s) 395
AvaII GGWCC 1 cut(s) 26
BaeGI GKGCMC 1 cut(s) 158
BbvI GCAGC 2 cut(s) 344, 508
BccI CCATC 2 cut(s) 81, 322
BclI TGATCA 1 cut(s) 394
BfmI CTRYAG 1 cut(s) 378
BisI GCNGC 2 cut(s) 333, 522
BlsI GCNGC 2 cut(s) 334, 523
Bme18I GGWCC 1 cut(s) 26
BmeRI GACNNNNNGTC 1 cut(s) 203
BmgT120I GGNCC 2 cut(s) 26, 216
BmiI GGNNCC 1 cut(s) 218
BmsI GCATC 3 cut(s) 174, 483, 629
BpmI CTGGAG 1 cut(s) 486
BpuEI CTTGAG 1 cut(s) 510
Bsc4I CCNNNNNNNGG 3 cut(s) 35, 152, 351
Bse1I ACTGG 1 cut(s) 29
Bse3DI GCAATG 1 cut(s) 450
BseGI GGATG 3 cut(s) 100, 189, 498
BseLI CCNNNNNNNGG 3 cut(s) 35, 152, 351
BseMI GCAATG 1 cut(s) 450
BseNI ACTGG 1 cut(s) 29
BseSI GKGCMC 1 cut(s) 158
BseXI GCAGC 2 cut(s) 344, 508
BshFI GGCC 2 cut(s) 35, 217
BsiSI CCGG 2 cut(s) 36, 146
BslI CCNNNNNNNGG 3 cut(s) 35, 152, 351
BsmI GAATGC 1 cut(s) 346
BsnI GGCC 2 cut(s) 35, 217
Bsp1286I GDGCHC 1 cut(s) 158
Bsp1407I TGTACA 1 cut(s) 571
Bsp143I GATC 8 cut(s) 49, 142, 227, 385, 394, 425, 451, 470
BspANI GGCC 2 cut(s) 35, 217
BspLI GGNNCC 1 cut(s) 218
BspPI GGATC 3 cut(s) 137, 446, 478
BsrDI GCAATG 1 cut(s) 450
BsrGI TGTACA 1 cut(s) 571
BsrI ACTGG 1 cut(s) 29
BssMI GATC 8 cut(s) 49, 142, 227, 385, 394, 425, 451, 470
Bst4CI ACNGT 1 cut(s) 586
BstAUI TGTACA 1 cut(s) 571
BstDEI CTNAG 2 cut(s) 336, 367
BstF5I GGATG 3 cut(s) 100, 189, 498
BstKTI GATC 8 cut(s) 52, 145, 230, 388, 397, 428, 454, 473
BstMBI GATC 8 cut(s) 49, 142, 227, 385, 394, 425, 451, 470
BstMWI GCNNNNNNNGC 2 cut(s) 193, 341
BstNSI RCATGY 1 cut(s) 608
BstSFI CTRYAG 1 cut(s) 378
BstSLI GKGCMC 1 cut(s) 158
BstV1I GCAGC 2 cut(s) 344, 508
BstX2I RGATCY 2 cut(s) 142, 470
BstYI RGATCY 2 cut(s) 142, 470
BsuRI GGCC 2 cut(s) 35, 217
BtsCI GGATG 3 cut(s) 100, 189, 498
BtsIMutI CAGTG 1 cut(s) 36
Cfr13I GGNCC 2 cut(s) 26, 216
Csp6I GTAC 2 cut(s) 316, 572
CspCI CAANNNNNGTGG 2 cut(s) 233, 268
CviAII CATG 3 cut(s) 419, 561, 605
CviJI RGCY 7 cut(s) 5, 35, 149, 217, 225, 233, 335
CviKI_1 RGCY 7 cut(s) 5, 35, 149, 217, 225, 233, 335
CviQI GTAC 2 cut(s) 316, 572
DdeI CTNAG 2 cut(s) 336, 367
DpnI GATC 8 cut(s) 51, 144, 229, 387, 396, 427, 453, 472
DpnII GATC 8 cut(s) 49, 142, 227, 385, 394, 425, 451, 470
DriI GACNNNNNGTC 1 cut(s) 203
EaeI YGGCCR 1 cut(s) 33
Eam1105I GACNNNNNGTC 1 cut(s) 203
Eco47I GGWCC 1 cut(s) 26
Eco57I CTGAAG 1 cut(s) 27
EcoT22I ATGCAT 1 cut(s) 610
FaeI CATG 3 cut(s) 422, 564, 608
FaiI YATR 7 cut(s) 181, 420, 562, 606, 610, 612, 625
FalI AAGNNNNNCTT 4 cut(s) 350, 382, 432, 464
FatI CATG 3 cut(s) 418, 560, 604
FauNDI CATATG 1 cut(s) 610
FbaI TGATCA 1 cut(s) 394
Fnu4HI GCNGC 2 cut(s) 333, 522
FokI GGATG 3 cut(s) 107, 196, 505
Fsp4HI GCNGC 2 cut(s) 333, 522
GluI GCNGC 2 cut(s) 333, 522
GsuI CTGGAG 1 cut(s) 486
HaeIII GGCC 2 cut(s) 35, 217
HapII CCGG 2 cut(s) 36, 146
Hin1II CATG 3 cut(s) 422, 564, 608
HinfI GANTC 1 cut(s) 533
HpaII CCGG 2 cut(s) 36, 146
HphI GGTGA 1 cut(s) 395
Hpy188I TCNGA 5 cut(s) 165, 409, 425, 486, 538
Hpy188III TCNNGA 3 cut(s) 74, 398, 455
HpyAV CCTTC 3 cut(s) 243, 259, 635
HpyCH4III ACNGT 1 cut(s) 586
HpyCH4V TGCA 5 cut(s) 117, 244, 293, 496, 608
HpyF10VI GCNNNNNNNGC 2 cut(s) 193, 341
HpyF3I CTNAG 2 cut(s) 336, 367
Hsp92II CATG 3 cut(s) 422, 564, 608
Ksp22I TGATCA 1 cut(s) 394
Kzo9I GATC 8 cut(s) 49, 142, 227, 385, 394, 425, 451, 470
LmnI GCTCC 1 cut(s) 538
LpnPI CCDG 9 cut(s) 9, 42, 49, 159, 366, 450, 468, 576, 602
Lsp1109I GCAGC 2 cut(s) 344, 508
LweI GCATC 3 cut(s) 174, 483, 629
MaeIII GTNAC 1 cut(s) 586
MalI GATC 8 cut(s) 51, 144, 229, 387, 396, 427, 453, 472
MboI GATC 8 cut(s) 49, 142, 227, 385, 394, 425, 451, 470
MboII GAAGA 3 cut(s) 20, 71, 113
MfeI CAATTG 2 cut(s) 110, 497
MflI RGATCY 2 cut(s) 142, 470
MhlI GDGCHC 1 cut(s) 158
MluCI AATT 8 cut(s) 110, 129, 211, 258, 310, 497, 556, 566
MlyI GAGTC 1 cut(s) 542
MmeI TCCRAC 1 cut(s) 516
MnlI CCTC 7 cut(s) 37, 91, 186, 247, 344, 354, 461
Mph1103I ATGCAT 1 cut(s) 610
MroXI GAANNNNTTC 1 cut(s) 105
MseI TTAA 1 cut(s) 296
MslI CAYNNNNRTG 1 cut(s) 609
MspI CCGG 2 cut(s) 36, 146
MunI CAATTG 2 cut(s) 110, 497
Mva1269I GAATGC 1 cut(s) 346
MwoI GCNNNNNNNGC 2 cut(s) 193, 341
NdeI CATATG 1 cut(s) 610
NdeII GATC 8 cut(s) 49, 142, 227, 385, 394, 425, 451, 470
NlaIII CATG 3 cut(s) 422, 564, 608
NlaIV GGNNCC 1 cut(s) 218
NmuCI GTSAC 1 cut(s) 586
NsiI ATGCAT 1 cut(s) 610
NspI RCATGY 1 cut(s) 608
PctI GAATGC 1 cut(s) 346
PdmI GAANNNNTTC 1 cut(s) 105
PkrI GCNGC 2 cut(s) 334, 523
PleI GAGTC 1 cut(s) 541
PpsI GAGTC 1 cut(s) 541
PspN4I GGNNCC 1 cut(s) 218
PspPI GGNCC 2 cut(s) 26, 216
PsuI RGATCY 2 cut(s) 142, 470
RsaI GTAC 2 cut(s) 317, 573
RsaNI GTAC 2 cut(s) 316, 572
RseI CAYNNNNRTG 1 cut(s) 609
SaqAI TTAA 1 cut(s) 296
SatI GCNGC 2 cut(s) 333, 522
Sau3AI GATC 8 cut(s) 49, 142, 227, 385, 394, 425, 451, 470
Sau96I GGNCC 2 cut(s) 26, 216
SchI GAGTC 1 cut(s) 542
SduI GDGCHC 1 cut(s) 158
SetI ASST 9 cut(s) 28, 235, 254, 270, 337, 365, 385, 595, 646
SfaNI GCATC 3 cut(s) 174, 483, 629
SfcI CTRYAG 1 cut(s) 378
SinI GGWCC 1 cut(s) 26
SmiMI CAYNNNNRTG 1 cut(s) 609
SmlI CTYRAG 1 cut(s) 525
SmoI CTYRAG 1 cut(s) 525
Sse9I AATT 8 cut(s) 110, 129, 211, 258, 310, 497, 556, 566
SspI AATATT 1 cut(s) 70
TaaI ACNGT 1 cut(s) 586
TaqI TCGA 1 cut(s) 388
TasI AATT 8 cut(s) 110, 129, 211, 258, 310, 497, 556, 566
TatI WGTACW 1 cut(s) 571
Tru1I TTAA 1 cut(s) 296
Tru9I TTAA 1 cut(s) 296
TscAI CASTG 1 cut(s) 36
TseFI GTSAC 1 cut(s) 586
TseI GCWGC 2 cut(s) 332, 521
Tsp45I GTSAC 1 cut(s) 586
TspDTI ATGAA 4 cut(s) 72, 492, 528, 549
TspGWI ACGGA 1 cut(s) 107
TspRI CASTG 1 cut(s) 36
VpaK11BI GGWCC 1 cut(s) 26
XapI RAATTY 2 cut(s) 258, 566
XceI RCATGY 1 cut(s) 608
XmnI GAANNNNTTC 1 cut(s) 105
Zsp2I ATGCAT 1 cut(s) 610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.