Rmu_sc0001501.1_g000057

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001501.1
OG0000127
Physical Location & Seq
Reverse (-)
252393 .. 253787
1395 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001501.1_g000057.1.cds

Sequence Viewer

Length: 669 bp
atgactgaagaaaggggaaacacaggtccagtggccggacaagagggagatcaaagtgaagatgataatatccaagacaaaaggagatggacggatgaggaagatgtccaattgtgcaagtcttggaaaattgttcgccaagatccggctgtgggcacaaatcagaaaaaaaaaaaaaaacgacctatggaggcgcaggaagatgtccaattgtgcaagtcttggaaaattgttcgccaagatccggctagccgatcagcttcctctttgcaaggaaggtggaaaattttgaaggttgaactatttgagtggcattgtgcattaaggcaagtgaaaaattggtacaagagcggttcgaatgcggttgatgagagttttgatagttacattgttgtggagggctttgcacaatttaaagacatccctagccatacatccggaggaacatcaaatgtaggaagtcaactaacgcacagacaaccaattgctgaaaattcccccatcaacttggacatggatgtagatgaggtaattacaggtgaaactgcagatcctaatgtgaggcctcaaggaaggaaggctgcgaaagaagcaattcggaaaggaaagaaggcagcgaaagatcaaaatcctttgtcaagcacactcgagagtatagcgaacaactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

222

Amino Acids

24.89

Weight (kDa)

6.85

Isoelectric Point (pI)

46.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000127)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02381 FvH4_1g19463 FvH4_1g28433 FvH4_2g16143 FvH4_2g18491 FvH4_2g27711 FvH4_3g19631 FvH4_3g23573 FvH4_4g35743 FvH4_5g23701 FvH4_6g19603 FvH4_6g39781 FvH4_6g40561 FvH4_7g02563 FvH4_7g11472 FvH4_7g17530
rosa_chinensis RchiOBHm_Chr1g0315991 RchiOBHm_Chr1g0318371 RchiOBHm_Chr1g0328341 RchiOBHm_Chr1g0331431 RchiOBHm_Chr1g0344801 RchiOBHm_Chr1g0371461 RchiOBHm_Chr1g0379261 RchiOBHm_Chr2g0117661 RchiOBHm_Chr5g0011791 RchiOBHm_Chr5g0020991 RchiOBHm_Chr5g0060631 RchiOBHm_Chr5g0064181 RchiOBHm_Chr5g0080181 RchiOBHm_Chr6g0254691 RchiOBHm_Chr6g0260101 RchiOBHm_Chr6g0290901 RchiOBHm_Chr7g0201691
rosa_laevigata RLG00000003529 RLG00000009370 RLG00000013568
rosa_multiflora Rmu_co8437743.1_g000001 Rmu_sc0000063.1_g000028 Rmu_sc0000098.1_g000004 Rmu_sc0000166.1_g000028 Rmu_sc0000258.1_g000102 Rmu_sc0000288.1_g000018 Rmu_sc0000333.1_g000043 Rmu_sc0000451.1_g000011 Rmu_sc0000455.1_g000003 Rmu_sc0000479.1_g000002 Rmu_sc0000687.1_g000014 Rmu_sc0000733.1_g000024 Rmu_sc0000736.1_g000001 Rmu_sc0000745.1_g000017 Rmu_sc0000760.1_g000031 Rmu_sc0000776.1_g000044 Rmu_sc0000828.1_g000011 Rmu_sc0000830.1_g000027 Rmu_sc0000857.1_g000025 Rmu_sc0000864.1_g000013 Rmu_sc0001016.1_g000034 Rmu_sc0001016.1_g000035 Rmu_sc0001036.1_g000015 Rmu_sc0001096.1_g000020 Rmu_sc0001145.1_g000023 Rmu_sc0001167.1_g000057 Rmu_sc0001173.1_g000030 Rmu_sc0001260.1_g000006 Rmu_sc0001266.1_g000016 Rmu_sc0001346.1_g000003 Rmu_sc0001346.1_g000004 Rmu_sc0001386.1_g000005 Rmu_sc0001501.1_g000057 Rmu_sc0001565.1_g000058 Rmu_sc0001634.1_g000047 Rmu_sc0001699.1_g000018 Rmu_sc0001700.1_g000041 Rmu_sc0001700.1_g000055 Rmu_sc0001725.1_g000005 Rmu_sc0001823.1_g000005 Rmu_sc0001877.1_g000014 Rmu_sc0001942.1_g000059 Rmu_sc0001966.1_g000033 Rmu_sc0001998.1_g000009 Rmu_sc0002011.1_g000030 Rmu_sc0002147.1_g000007 Rmu_sc0002176.1_g000005 Rmu_sc0002235.1_g000097 Rmu_sc0002324.1_g000002 Rmu_sc0002352.1_g000011 Rmu_sc0002365.1_g000022 Rmu_sc0002548.1_g000007 Rmu_sc0002890.1_g000008 Rmu_sc0002936.1_g000003 Rmu_sc0002955.1_g000016 Rmu_sc0003160.1_g000032 Rmu_sc0003452.1_g000010 Rmu_sc0003490.1_g000023 Rmu_sc0003541.1_g000014 Rmu_sc0003555.1_g000014 Rmu_sc0003759.1_g000008 Rmu_sc0003843.1_g000001 Rmu_sc0003846.1_g000005 Rmu_sc0003890.1_g000019 Rmu_sc0003953.1_g000016 Rmu_sc0003967.1_g000001 Rmu_sc0004068.1_g000002 Rmu_sc0004101.1_g000004 Rmu_sc0004298.1_g000010 Rmu_sc0004507.1_g000008 Rmu_sc0004649.1_g000015 Rmu_sc0004719.1_g000006 Rmu_sc0004751.1_g000012 Rmu_sc0004821.1_g000005 Rmu_sc0004868.1_g000003 Rmu_sc0004876.1_g000023 Rmu_sc0004932.1_g000020 Rmu_sc0005093.1_g000020 Rmu_sc0005132.1_g000019 Rmu_sc0005274.1_g000001 Rmu_sc0005381.1_g000013 Rmu_sc0005693.1_g000009 Rmu_sc0005708.1_g000011 Rmu_sc0005834.1_g000016 Rmu_sc0005966.1_g000017 Rmu_sc0006173.1_g000033 Rmu_sc0006175.1_g000012 Rmu_sc0006590.1_g000004 Rmu_sc0006695.1_g000044 Rmu_sc0007061.1_g000002 Rmu_sc0007069.1_g000023 Rmu_sc0007216.1_g000006 Rmu_sc0008124.1_g000026 Rmu_sc0008148.1_g000028 Rmu_sc0008198.1_g000004 Rmu_sc0008423.1_g000003 Rmu_sc0008441.1_g000011 Rmu_sc0008707.1_g000005 Rmu_sc0009101.1_g000008 Rmu_sc0009240.1_g000039 Rmu_sc0009414.1_g000002 Rmu_sc0009628.1_g000001 Rmu_sc0010048.1_g000007 Rmu_sc0010275.1_g000001 Rmu_sc0010338.1_g000004 Rmu_sc0010659.1_g000005 Rmu_sc0010691.1_g000001 Rmu_sc0011023.1_g000006 Rmu_sc0011533.1_g000001 Rmu_sc0011901.1_g000001 Rmu_sc0012746.1_g000042 Rmu_sc0012773.1_g000005 Rmu_sc0012952.1_g000005 Rmu_sc0014568.1_g000002 Rmu_sc0014568.1_g000003 Rmu_sc0015188.1_g000004 Rmu_sc0019714.1_g000001 Rmu_sc0020148.1_g000003 Rmu_sc0020260.1_g000003 Rmu_sc0021213.1_g000002 Rmu_sc0022616.1_g000001 Rmu_ssc0000084.1_g000006 Rmu_ssc0000116.1_g000017 Rmu_ssc0000116.1_g000018 Rmu_ssc0000189.1_g000037 Rmu_ssc0000330.1_g000009 Rmu_ssc0000359.1_g000004 Rmu_ssc0000366.1_g000031 Rmu_ssc0000386.1_g000056 Rmu_ssc0000387.1_g000006 Rmu_ssc0000400.1_g000065 Rmu_ssc0000440.1_g000006 Rmu_ssc0000452.1_g000014
rosa_roxburghii Rroxscaffold_1G00020180 Rroxscaffold_2G00089580 Rroxscaffold_2G00143500 Rroxscaffold_3G00264360 Rroxscaffold_4G00316450 Rroxscaffold_4G00327050 Rroxscaffold_5G00350260 Rroxscaffold_5G00351750 Rroxscaffold_5G00364680 Rroxscaffold_5G00376220 Rroxscaffold_6G00391720
rosa_rugosa Rorug04G0096700 Rorug05G0284300 Rorug06G0059800 Rorug06G0059900 Rorug06G0060000 Rorug06G0060100 Rorug06G0060200 Rorug06G0127700 Rorug06G0243400
rosa_samantha Rh1AG033000 Rh1AG274600 Rh1DG069700 Rh2DG069900 Rh2DG210700 Rh2DG560100 Rh3AG245500 Rh3BG095400 Rh4AG018100 Rh4AG084900 Rh4AG177900 Rh4CG092300 Rh4CG194700 Rh5BG350600 Rh6BG362400 Rh7DG198200 Rh7DG403500
rosa_wichuraiana Rw1G008260 Rw1G035940 Rw2G027180 Rw4G003470 Rw4G010610 Rw5G037240 Rw6G036490 Rw7G015690 Rw7G028950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 351
AccIII TCCGGA 1 cut(s) 437
AciI CCGC 2 cut(s) 351, 362
AclWI GGATC 3 cut(s) 137, 236, 545
AcoI YGGCCR 1 cut(s) 33
AcsI RAATTY 2 cut(s) 285, 493
AcuI CTGAAG 1 cut(s) 27
AfaI GTAC 1 cut(s) 344
AfiI CCNNNNNNNGG 4 cut(s) 35, 145, 152, 244
AgsI TTSAA 2 cut(s) 292, 299
AluBI AGCT 1 cut(s) 260
AluI AGCT 1 cut(s) 260
AlwI GGATC 3 cut(s) 137, 236, 545
Ama87I CYCGRG 1 cut(s) 647
Aor13HI TCCGGA 1 cut(s) 437
AoxI GGCC 2 cut(s) 33, 563
ApeKI GCWGC 2 cut(s) 581, 614
ApoI RAATTY 2 cut(s) 285, 493
Asp700I GAANNNNTTC 1 cut(s) 594
AspLEI GCGC 1 cut(s) 196
AspS9I GGNCC 1 cut(s) 26
AsuHPI GGTGA 1 cut(s) 551
AsuII TTCGAA 1 cut(s) 356
AsuNHI GCTAGC 1 cut(s) 248
AvaI CYCGRG 1 cut(s) 647
AvaII GGWCC 1 cut(s) 26
BaeGI GKGCMC 1 cut(s) 158
BbvI GCAGC 2 cut(s) 568, 626
BccI CCATC 2 cut(s) 81, 509
BfaI CTAG 2 cut(s) 249, 426
BfmI CTRYAG 1 cut(s) 546
BisI GCNGC 2 cut(s) 582, 615
BlsI GCNGC 2 cut(s) 583, 616
Bme18I GGWCC 1 cut(s) 26
BmeT110I CYCGRG 1 cut(s) 647
BmgT120I GGNCC 1 cut(s) 26
BmtI GCTAGC 1 cut(s) 252
Bpu14I TTCGAA 1 cut(s) 356
BpuEI CTTGAG 1 cut(s) 552
BsaBI GATNNNNATC 1 cut(s) 627
BsaWI WCCGGW 1 cut(s) 437
Bsc4I CCNNNNNNNGG 4 cut(s) 35, 145, 152, 244
Bse1I ACTGG 1 cut(s) 29
Bse8I GATNNNNATC 1 cut(s) 627
BseAI TCCGGA 1 cut(s) 437
BseGI GGATG 4 cut(s) 100, 420, 434, 523
BseJI GATNNNNATC 1 cut(s) 627
BseLI CCNNNNNNNGG 4 cut(s) 35, 145, 152, 244
BseNI ACTGG 1 cut(s) 29
BseSI GKGCMC 1 cut(s) 158
BseXI GCAGC 2 cut(s) 568, 626
BshFI GGCC 2 cut(s) 35, 565
BsiHKCI CYCGRG 1 cut(s) 647
BsiSI CCGG 4 cut(s) 36, 146, 245, 438
BslI CCNNNNNNNGG 4 cut(s) 35, 145, 152, 244
BsmI GAATGC 1 cut(s) 364
BsnI GGCC 2 cut(s) 35, 565
BsoBI CYCGRG 1 cut(s) 647
Bsp119I TTCGAA 1 cut(s) 356
Bsp1286I GDGCHC 1 cut(s) 158
Bsp13I TCCGGA 1 cut(s) 437
Bsp143I GATC 6 cut(s) 49, 142, 241, 254, 550, 622
BspACI CCGC 2 cut(s) 351, 362
BspANI GGCC 2 cut(s) 35, 565
BspEI TCCGGA 1 cut(s) 437
BspMAI CTGCAG 1 cut(s) 550
BspOI GCTAGC 1 cut(s) 252
BspPI GGATC 3 cut(s) 137, 236, 545
BspT104I TTCGAA 1 cut(s) 356
BsrBI CCGCTC 1 cut(s) 351
BsrI ACTGG 1 cut(s) 29
BssMI GATC 6 cut(s) 49, 142, 241, 254, 550, 622
BstBI TTCGAA 1 cut(s) 356
BstC8I GCNNGC 1 cut(s) 250
BstF5I GGATG 4 cut(s) 100, 420, 434, 523
BstHHI GCGC 1 cut(s) 196
BstKTI GATC 6 cut(s) 52, 145, 244, 257, 553, 625
BstMBI GATC 6 cut(s) 49, 142, 241, 254, 550, 622
BstMWI GCNNNNNNNGC 1 cut(s) 590
BstSFI CTRYAG 1 cut(s) 546
BstSLI GKGCMC 1 cut(s) 158
BstV1I GCAGC 2 cut(s) 568, 626
BstX2I RGATCY 3 cut(s) 142, 241, 550
BstXI CCANNNNNNTGG 1 cut(s) 508
BstYI RGATCY 3 cut(s) 142, 241, 550
BsuRI GGCC 2 cut(s) 35, 565
BtsCI GGATG 4 cut(s) 100, 420, 434, 523
BtsIMutI CAGTG 1 cut(s) 36
Cac8I GCNNGC 1 cut(s) 250
CfoI GCGC 1 cut(s) 196
Cfr13I GGNCC 1 cut(s) 26
Csp6I GTAC 1 cut(s) 343
CspCI CAANNNNNGTGG 2 cut(s) 260, 295
CviAII CATG 1 cut(s) 514
CviJI RGCY 9 cut(s) 35, 149, 248, 252, 260, 402, 429, 565, 581
CviKI_1 RGCY 9 cut(s) 35, 149, 248, 252, 260, 402, 429, 565, 581
CviQI GTAC 1 cut(s) 343
DpnI GATC 6 cut(s) 51, 144, 243, 256, 552, 624
DpnII GATC 6 cut(s) 49, 142, 241, 254, 550, 622
DraI TTTAAA 1 cut(s) 415
EaeI YGGCCR 1 cut(s) 33
Eco147I AGGCCT 1 cut(s) 565
Eco47I GGWCC 1 cut(s) 26
Eco57I CTGAAG 1 cut(s) 27
Eco88I CYCGRG 1 cut(s) 647
FaeI CATG 1 cut(s) 517
FaiI YATR 4 cut(s) 188, 432, 515, 656
FatI CATG 1 cut(s) 513
Fnu4HI GCNGC 2 cut(s) 582, 615
FokI GGATG 4 cut(s) 107, 407, 421, 530
Fsp4HI GCNGC 2 cut(s) 582, 615
FspBI CTAG 2 cut(s) 249, 426
GlaI GCGC 1 cut(s) 195
GluI GCNGC 2 cut(s) 582, 615
HaeIII GGCC 2 cut(s) 35, 565
HapII CCGG 4 cut(s) 36, 146, 245, 438
HhaI GCGC 1 cut(s) 196
Hin1II CATG 1 cut(s) 517
Hin6I GCGC 1 cut(s) 194
HinP1I GCGC 1 cut(s) 194
HincII GTYRAC 1 cut(s) 464
HindII GTYRAC 1 cut(s) 464
HpaII CCGG 4 cut(s) 36, 146, 245, 438
HphI GGTGA 1 cut(s) 551
Hpy166II GTNNAC 1 cut(s) 464
Hpy188I TCNGA 2 cut(s) 165, 600
Hpy188III TCNNGA 2 cut(s) 438, 649
Hpy8I GTNNAC 1 cut(s) 464
HpyAV CCTTC 5 cut(s) 270, 286, 567, 571, 604
HpyCH4V TGCA 6 cut(s) 117, 216, 271, 320, 407, 548
HpyF10VI GCNNNNNNNGC 1 cut(s) 590
Hsp92II CATG 1 cut(s) 517
HspAI GCGC 1 cut(s) 194
Kpn2I TCCGGA 1 cut(s) 437
Kzo9I GATC 6 cut(s) 49, 142, 241, 254, 550, 622
LpnPI CCDG 8 cut(s) 9, 42, 49, 159, 182, 258, 451, 522
Lsp1109I GCAGC 2 cut(s) 568, 626
MaeI CTAG 2 cut(s) 249, 426
MaeIII GTNAC 1 cut(s) 383
MalI GATC 6 cut(s) 51, 144, 243, 256, 552, 624
MbiI CCGCTC 1 cut(s) 351
MboI GATC 6 cut(s) 49, 142, 241, 254, 550, 622
MboII GAAGA 4 cut(s) 20, 71, 113, 212
MfeI CAATTG 3 cut(s) 110, 209, 483
MflI RGATCY 3 cut(s) 142, 241, 550
MhlI GDGCHC 1 cut(s) 158
MnlI CCTC 9 cut(s) 37, 91, 184, 274, 391, 434, 520, 555, 576
MroI TCCGGA 1 cut(s) 437
MroXI GAANNNNTTC 1 cut(s) 594
MseI TTAA 2 cut(s) 323, 414
MslI CAYNNNNRTG 1 cut(s) 392
MspI CCGG 4 cut(s) 36, 146, 245, 438
MunI CAATTG 3 cut(s) 110, 209, 483
Mva1269I GAATGC 1 cut(s) 364
MwoI GCNNNNNNNGC 1 cut(s) 590
NdeII GATC 6 cut(s) 49, 142, 241, 254, 550, 622
NheI GCTAGC 1 cut(s) 248
NlaIII CATG 1 cut(s) 517
NspV TTCGAA 1 cut(s) 356
PaeR7I CTCGAG 1 cut(s) 647
PceI AGGCCT 1 cut(s) 565
PctI GAATGC 1 cut(s) 364
PdmI GAANNNNTTC 1 cut(s) 594
PkrI GCNGC 2 cut(s) 583, 616
PspPI GGNCC 1 cut(s) 26
PstI CTGCAG 1 cut(s) 550
PsuI RGATCY 3 cut(s) 142, 241, 550
RsaI GTAC 1 cut(s) 344
RsaNI GTAC 1 cut(s) 343
RseI CAYNNNNRTG 1 cut(s) 392
SaqAI TTAA 2 cut(s) 323, 414
SatI GCNGC 2 cut(s) 582, 615
Sau3AI GATC 6 cut(s) 49, 142, 241, 254, 550, 622
Sau96I GGNCC 1 cut(s) 26
SduI GDGCHC 1 cut(s) 158
SetI ASST 7 cut(s) 28, 187, 262, 281, 297, 531, 541
SfcI CTRYAG 1 cut(s) 546
Sfr274I CTCGAG 1 cut(s) 647
SfuI TTCGAA 1 cut(s) 356
SinI GGWCC 1 cut(s) 26
SlaI CTCGAG 1 cut(s) 647
SmiMI CAYNNNNRTG 1 cut(s) 392
SmlI CTYRAG 2 cut(s) 567, 647
SmoI CTYRAG 2 cut(s) 567, 647
SseBI AGGCCT 1 cut(s) 565
SsiI CCGC 2 cut(s) 351, 362
SspMI CTAG 2 cut(s) 249, 426
StuI AGGCCT 1 cut(s) 565
TaqI TCGA 2 cut(s) 356, 648
Tru1I TTAA 2 cut(s) 323, 414
Tru9I TTAA 2 cut(s) 323, 414
TscAI CASTG 1 cut(s) 36
TseI GCWGC 2 cut(s) 581, 614
TspGWI ACGGA 1 cut(s) 107
TspRI CASTG 1 cut(s) 36
VpaK11BI GGWCC 1 cut(s) 26
XapI RAATTY 2 cut(s) 285, 493
XhoI CTCGAG 1 cut(s) 647
XmnI GAANNNNTTC 1 cut(s) 594
XspI CTAG 2 cut(s) 249, 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.