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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 649 |
| Acc65I | GGTACC | 1 cut(s) | 97 |
| AccB1I | GGYRCC | 1 cut(s) | 97 |
| AccI | GTMKAC | 1 cut(s) | 279 |
| AciI | CCGC | 2 cut(s) | 191, 311 |
| AcoI | YGGCCR | 1 cut(s) | 348 |
| AcsI | RAATTY | 3 cut(s) | 74, 121, 623 |
| AcuI | CTGAAG | 2 cut(s) | 177, 355 |
| AdeI | CACNNNGTG | 1 cut(s) | 182 |
| AfaI | GTAC | 3 cut(s) | 99, 106, 496 |
| AgsI | TTSAA | 6 cut(s) | 74, 451, 524, 560, 583, 678 |
| AleI | CACNNNNGTG | 1 cut(s) | 516 |
| AluBI | AGCT | 4 cut(s) | 465, 487, 552, 567 |
| AluI | AGCT | 4 cut(s) | 465, 487, 552, 567 |
| Alw26I | GTCTC | 1 cut(s) | 309 |
| Ama87I | CYCGRG | 1 cut(s) | 477 |
| AoxI | GGCC | 3 cut(s) | 348, 400, 667 |
| ApeKI | GCWGC | 1 cut(s) | 330 |
| ApoI | RAATTY | 3 cut(s) | 74, 121, 623 |
| Asp718I | GGTACC | 1 cut(s) | 97 |
| AspLEI | GCGC | 1 cut(s) | 753 |
| AspS9I | GGNCC | 1 cut(s) | 668 |
| AvaI | CYCGRG | 1 cut(s) | 477 |
| BanI | GGYRCC | 1 cut(s) | 97 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 97, 129 |
| BbsI | GAAGAC | 1 cut(s) | 243 |
| BbvI | GCAGC | 1 cut(s) | 317 |
| BccI | CCATC | 2 cut(s) | 310, 659 |
| BclI | TGATCA | 1 cut(s) | 379 |
| BcoDI | GTCTC | 1 cut(s) | 309 |
| BfaI | CTAG | 1 cut(s) | 203 |
| BfmI | CTRYAG | 1 cut(s) | 656 |
| BfuAI | ACCTGC | 1 cut(s) | 649 |
| BglII | AGATCT | 1 cut(s) | 150 |
| BisI | GCNGC | 1 cut(s) | 331 |
| BlsI | GCNGC | 1 cut(s) | 332 |
| BmeT110I | CYCGRG | 1 cut(s) | 477 |
| BmgT120I | GGNCC | 1 cut(s) | 668 |
| BmiI | GGNNCC | 1 cut(s) | 99 |
| BpiI | GAAGAC | 1 cut(s) | 243 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 26, 58 |
| BsaI | GGTCTC | 1 cut(s) | 309 |
| BsaJI | CCNNGG | 2 cut(s) | 345, 351 |
| BseDI | CCNNGG | 2 cut(s) | 345, 351 |
| BseGI | GGATG | 1 cut(s) | 128 |
| BseXI | GCAGC | 1 cut(s) | 317 |
| BseYI | CCCAGC | 2 cut(s) | 4, 563 |
| BshFI | GGCC | 3 cut(s) | 350, 402, 669 |
| BshNI | GGYRCC | 1 cut(s) | 97 |
| BsiHKCI | CYCGRG | 1 cut(s) | 477 |
| BsmAI | GTCTC | 1 cut(s) | 309 |
| BsnI | GGCC | 3 cut(s) | 350, 402, 669 |
| Bso31I | GGTCTC | 1 cut(s) | 309 |
| BsoBI | CYCGRG | 1 cut(s) | 477 |
| Bsp143I | GATC | 4 cut(s) | 150, 379, 546, 589 |
| BspACI | CCGC | 2 cut(s) | 191, 311 |
| BspANI | GGCC | 3 cut(s) | 350, 402, 669 |
| BspLI | GGNNCC | 1 cut(s) | 99 |
| BspMAI | CTGCAG | 1 cut(s) | 660 |
| BspMI | ACCTGC | 1 cut(s) | 649 |
| BspT107I | GGYRCC | 1 cut(s) | 97 |
| BspTNI | GGTCTC | 1 cut(s) | 309 |
| BssECI | CCNNGG | 2 cut(s) | 345, 351 |
| BssMI | GATC | 4 cut(s) | 150, 379, 546, 589 |
| BssT1I | CCWWGG | 1 cut(s) | 351 |
| Bst6I | CTCTTC | 1 cut(s) | 216 |
| BstC8I | GCNNGC | 1 cut(s) | 656 |
| BstF5I | GGATG | 1 cut(s) | 128 |
| BstHHI | GCGC | 1 cut(s) | 753 |
| BstKTI | GATC | 4 cut(s) | 153, 382, 549, 592 |
| BstMAI | GTCTC | 1 cut(s) | 309 |
| BstMBI | GATC | 4 cut(s) | 150, 379, 546, 589 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 651 |
| BstNSI | RCATGY | 1 cut(s) | 176 |
| BstSFI | CTRYAG | 1 cut(s) | 656 |
| BstV1I | GCAGC | 1 cut(s) | 317 |
| BstV2I | GAAGAC | 1 cut(s) | 243 |
| BstX2I | RGATCY | 1 cut(s) | 150 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 571 |
| BstYI | RGATCY | 1 cut(s) | 150 |
| BsuRI | GGCC | 3 cut(s) | 350, 402, 669 |
| BtsCI | GGATG | 1 cut(s) | 128 |
| BveI | ACCTGC | 1 cut(s) | 649 |
| Cac8I | GCNNGC | 1 cut(s) | 656 |
| CfoI | GCGC | 1 cut(s) | 753 |
| Cfr13I | GGNCC | 1 cut(s) | 668 |
| Csp6I | GTAC | 3 cut(s) | 98, 105, 495 |
| CviAII | CATG | 4 cut(s) | 173, 271, 571, 699 |
| CviJI | RGCY | 8 cut(s) | 350, 402, 465, 487, 552, 567, 654, 669 |
| CviKI_1 | RGCY | 8 cut(s) | 350, 402, 465, 487, 552, 567, 654, 669 |
| CviQI | GTAC | 3 cut(s) | 98, 105, 495 |
| DpnI | GATC | 4 cut(s) | 152, 381, 548, 591 |
| DpnII | GATC | 4 cut(s) | 150, 379, 546, 589 |
| DraIII | CACNNNGTG | 1 cut(s) | 182 |
| EaeI | YGGCCR | 1 cut(s) | 348 |
| Eam1104I | CTCTTC | 1 cut(s) | 216 |
| EarI | CTCTTC | 1 cut(s) | 216 |
| Eco130I | CCWWGG | 1 cut(s) | 351 |
| Eco147I | AGGCCT | 1 cut(s) | 402 |
| Eco31I | GGTCTC | 1 cut(s) | 309 |
| Eco57I | CTGAAG | 2 cut(s) | 177, 355 |
| Eco88I | CYCGRG | 1 cut(s) | 477 |
| EcoRI | GAATTC | 1 cut(s) | 74 |
| EcoT14I | CCWWGG | 1 cut(s) | 351 |
| ErhI | CCWWGG | 1 cut(s) | 351 |
| FaeI | CATG | 4 cut(s) | 176, 274, 574, 702 |
| FaiI | YATR | 9 cut(s) | 140, 174, 272, 361, 411, 572, 588, 700, 746 |
| FatI | CATG | 4 cut(s) | 172, 270, 570, 698 |
| FauI | CCCGC | 1 cut(s) | 304 |
| FbaI | TGATCA | 1 cut(s) | 379 |
| FblI | GTMKAC | 1 cut(s) | 279 |
| Fnu4HI | GCNGC | 1 cut(s) | 331 |
| FokI | GGATG | 1 cut(s) | 115 |
| Fsp4HI | GCNGC | 1 cut(s) | 331 |
| FspBI | CTAG | 1 cut(s) | 203 |
| GlaI | GCGC | 1 cut(s) | 752 |
| GluI | GCNGC | 1 cut(s) | 331 |
| GsaI | CCCAGC | 2 cut(s) | 8, 567 |
| HaeIII | GGCC | 3 cut(s) | 350, 402, 669 |
| HhaI | GCGC | 1 cut(s) | 753 |
| Hin1II | CATG | 4 cut(s) | 176, 274, 574, 702 |
| Hin6I | GCGC | 1 cut(s) | 751 |
| HinP1I | GCGC | 1 cut(s) | 751 |
| HindIII | AAGCTT | 1 cut(s) | 485 |
| HinfI | GANTC | 4 cut(s) | 9, 47, 53, 389 |
| Hpy166II | GTNNAC | 1 cut(s) | 280 |
| Hpy188I | TCNGA | 7 cut(s) | 14, 46, 52, 58, 86, 157, 621 |
| Hpy188III | TCNNGA | 3 cut(s) | 117, 479, 730 |
| Hpy8I | GTNNAC | 1 cut(s) | 280 |
| HpyAV | CCTTC | 3 cut(s) | 123, 188, 681 |
| HpyCH4V | TGCA | 3 cut(s) | 176, 333, 658 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 651 |
| Hsp92II | CATG | 4 cut(s) | 176, 274, 574, 702 |
| HspAI | GCGC | 1 cut(s) | 751 |
| KpnI | GGTACC | 1 cut(s) | 101 |
| Ksp22I | TGATCA | 1 cut(s) | 379 |
| Kzo9I | GATC | 4 cut(s) | 150, 379, 546, 589 |
| LpnPI | CCDG | 7 cut(s) | 150, 384, 419, 515, 577, 644, 668 |
| Lsp1109I | GCAGC | 1 cut(s) | 317 |
| MaeI | CTAG | 1 cut(s) | 203 |
| MaeIII | GTNAC | 3 cut(s) | 541, 598, 634 |
| MalI | GATC | 4 cut(s) | 152, 381, 548, 591 |
| MboI | GATC | 4 cut(s) | 150, 379, 546, 589 |
| MflI | RGATCY | 1 cut(s) | 150 |
| MluCI | AATT | 5 cut(s) | 74, 121, 427, 441, 623 |
| MlyI | GAGTC | 1 cut(s) | 18 |
| MseI | TTAA | 2 cut(s) | 692, 711 |
| MslI | CAYNNNNRTG | 2 cut(s) | 216, 516 |
| MspA1I | CMGCKG | 1 cut(s) | 552 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 651 |
| NdeII | GATC | 4 cut(s) | 150, 379, 546, 589 |
| NlaIII | CATG | 4 cut(s) | 176, 274, 574, 702 |
| NlaIV | GGNNCC | 1 cut(s) | 99 |
| NmeAIII | GCCGAG | 1 cut(s) | 326 |
| NmuCI | GTSAC | 2 cut(s) | 541, 634 |
| NspI | RCATGY | 1 cut(s) | 176 |
| OliI | CACNNNNGTG | 1 cut(s) | 516 |
| PaeR7I | CTCGAG | 1 cut(s) | 477 |
| PceI | AGGCCT | 1 cut(s) | 402 |
| PfeI | GAWTC | 3 cut(s) | 47, 53, 389 |
| PkrI | GCNGC | 1 cut(s) | 332 |
| PleI | GAGTC | 1 cut(s) | 17 |
| PpsI | GAGTC | 1 cut(s) | 17 |
| PspFI | CCCAGC | 2 cut(s) | 4, 563 |
| PspN4I | GGNNCC | 1 cut(s) | 99 |
| PspPI | GGNCC | 1 cut(s) | 668 |
| PstI | CTGCAG | 1 cut(s) | 660 |
| PsuI | RGATCY | 1 cut(s) | 150 |
| PvuII | CAGCTG | 1 cut(s) | 552 |
| RsaI | GTAC | 3 cut(s) | 99, 106, 496 |
| RsaNI | GTAC | 3 cut(s) | 98, 105, 495 |
| RseI | CAYNNNNRTG | 2 cut(s) | 216, 516 |
| SaqAI | TTAA | 2 cut(s) | 692, 711 |
| SatI | GCNGC | 1 cut(s) | 331 |
| Sau3AI | GATC | 4 cut(s) | 150, 379, 546, 589 |
| Sau96I | GGNCC | 1 cut(s) | 668 |
| SbfI | CCTGCAGG | 1 cut(s) | 660 |
| SchI | GAGTC | 1 cut(s) | 18 |
| SdaI | CCTGCAGG | 1 cut(s) | 660 |
| SetI | ASST | 8 cut(s) | 99, 103, 426, 467, 489, 554, 569, 663 |
| SfcI | CTRYAG | 1 cut(s) | 656 |
| Sfr274I | CTCGAG | 1 cut(s) | 477 |
| SlaI | CTCGAG | 1 cut(s) | 477 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 216, 516 |
| SmlI | CTYRAG | 1 cut(s) | 477 |
| SmoI | CTYRAG | 1 cut(s) | 477 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 660 |
| Sse9I | AATT | 5 cut(s) | 74, 121, 427, 441, 623 |
| SseBI | AGGCCT | 1 cut(s) | 402 |
| SsiI | CCGC | 2 cut(s) | 191, 311 |
| SspMI | CTAG | 1 cut(s) | 203 |
| StuI | AGGCCT | 1 cut(s) | 402 |
| StyI | CCWWGG | 1 cut(s) | 351 |
| TaqI | TCGA | 3 cut(s) | 118, 298, 478 |
| TaqII | GACCGA | 1 cut(s) | 618 |
| TasI | AATT | 5 cut(s) | 74, 121, 427, 441, 623 |
| TfiI | GAWTC | 3 cut(s) | 47, 53, 389 |
| Tru1I | TTAA | 2 cut(s) | 692, 711 |
| Tru9I | TTAA | 2 cut(s) | 692, 711 |
| TseFI | GTSAC | 2 cut(s) | 541, 634 |
| TseI | GCWGC | 1 cut(s) | 330 |
| Tsp45I | GTSAC | 2 cut(s) | 541, 634 |
| TspDTI | ATGAA | 2 cut(s) | 287, 559 |
| XapI | RAATTY | 3 cut(s) | 74, 121, 623 |
| XceI | RCATGY | 1 cut(s) | 176 |
| XhoI | CTCGAG | 1 cut(s) | 477 |
| XmiI | GTMKAC | 1 cut(s) | 279 |
| XspI | CTAG | 1 cut(s) | 203 |