Rmu_sc0010275.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010275.1
OG0000127
Physical Location & Seq
Forward (+)
455 .. 1225
771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010275.1_g000001.1.cds

Sequence Viewer

Length: 771 bp
atgcacacacaacaatccactcctgattctcatgtccagttggacctagatgcagatgaggtaaacgccgatgcaactccaaatccttcggtgaggcctcaaggaaagaaggctgccaaagaagctcttcggaaaggaaagaaagcatctaatgattccagtcctctaacagctgctgtggagactatagcaaccaaccaaacatcaatgatgtctgccaaggagaaacgtgatgaggaatatgctcgacatctccgtgaccaacaagaacgagattatatacgcttgcaaatggatatgcgaaacgaggcattcaaaattcaacagagtgaagagcgtattatggagatggacacaagtaagatgacgccaaccaaaaagaattactggcaaagaaaacaaaaaaaaattgcagagaaagaagctgaagatgcaacccgcggatctaacatgccacaaccaccattccccggtgggtattatccacaatctcctttctccggtggctatccacaacctcatctccctggtggctatccacaacctcctttccccggtggctatctacaaccacctatccccggtggctatccacaaccaccattccccggtgggtattatccacaatctcctttccccggtggctttccacaaccaccattcacaggtggtgtcccttccccacccttctcttcgggtgaatccaccaaccccaaccatatggatgaccccacaaacacaaattggattcctaatgaagatgaggattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

256

Amino Acids

28.49

Weight (kDa)

5.46

Isoelectric Point (pI)

74.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000127)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02381 FvH4_1g19463 FvH4_1g28433 FvH4_2g16143 FvH4_2g18491 FvH4_2g27711 FvH4_3g19631 FvH4_3g23573 FvH4_4g35743 FvH4_5g23701 FvH4_6g19603 FvH4_6g39781 FvH4_6g40561 FvH4_7g02563 FvH4_7g11472 FvH4_7g17530
rosa_chinensis RchiOBHm_Chr1g0315991 RchiOBHm_Chr1g0318371 RchiOBHm_Chr1g0328341 RchiOBHm_Chr1g0331431 RchiOBHm_Chr1g0344801 RchiOBHm_Chr1g0371461 RchiOBHm_Chr1g0379261 RchiOBHm_Chr2g0117661 RchiOBHm_Chr5g0011791 RchiOBHm_Chr5g0020991 RchiOBHm_Chr5g0060631 RchiOBHm_Chr5g0064181 RchiOBHm_Chr5g0080181 RchiOBHm_Chr6g0254691 RchiOBHm_Chr6g0260101 RchiOBHm_Chr6g0290901 RchiOBHm_Chr7g0201691
rosa_laevigata RLG00000003529 RLG00000009370 RLG00000013568
rosa_multiflora Rmu_co8437743.1_g000001 Rmu_sc0000063.1_g000028 Rmu_sc0000098.1_g000004 Rmu_sc0000166.1_g000028 Rmu_sc0000258.1_g000102 Rmu_sc0000288.1_g000018 Rmu_sc0000333.1_g000043 Rmu_sc0000451.1_g000011 Rmu_sc0000455.1_g000003 Rmu_sc0000479.1_g000002 Rmu_sc0000687.1_g000014 Rmu_sc0000733.1_g000024 Rmu_sc0000736.1_g000001 Rmu_sc0000745.1_g000017 Rmu_sc0000760.1_g000031 Rmu_sc0000776.1_g000044 Rmu_sc0000828.1_g000011 Rmu_sc0000830.1_g000027 Rmu_sc0000857.1_g000025 Rmu_sc0000864.1_g000013 Rmu_sc0001016.1_g000034 Rmu_sc0001016.1_g000035 Rmu_sc0001036.1_g000015 Rmu_sc0001096.1_g000020 Rmu_sc0001145.1_g000023 Rmu_sc0001167.1_g000057 Rmu_sc0001173.1_g000030 Rmu_sc0001260.1_g000006 Rmu_sc0001266.1_g000016 Rmu_sc0001346.1_g000003 Rmu_sc0001346.1_g000004 Rmu_sc0001386.1_g000005 Rmu_sc0001501.1_g000057 Rmu_sc0001565.1_g000058 Rmu_sc0001634.1_g000047 Rmu_sc0001699.1_g000018 Rmu_sc0001700.1_g000041 Rmu_sc0001700.1_g000055 Rmu_sc0001725.1_g000005 Rmu_sc0001823.1_g000005 Rmu_sc0001877.1_g000014 Rmu_sc0001942.1_g000059 Rmu_sc0001966.1_g000033 Rmu_sc0001998.1_g000009 Rmu_sc0002011.1_g000030 Rmu_sc0002147.1_g000007 Rmu_sc0002176.1_g000005 Rmu_sc0002235.1_g000097 Rmu_sc0002324.1_g000002 Rmu_sc0002352.1_g000011 Rmu_sc0002365.1_g000022 Rmu_sc0002548.1_g000007 Rmu_sc0002890.1_g000008 Rmu_sc0002936.1_g000003 Rmu_sc0002955.1_g000016 Rmu_sc0003160.1_g000032 Rmu_sc0003452.1_g000010 Rmu_sc0003490.1_g000023 Rmu_sc0003541.1_g000014 Rmu_sc0003555.1_g000014 Rmu_sc0003759.1_g000008 Rmu_sc0003843.1_g000001 Rmu_sc0003846.1_g000005 Rmu_sc0003890.1_g000019 Rmu_sc0003953.1_g000016 Rmu_sc0003967.1_g000001 Rmu_sc0004068.1_g000002 Rmu_sc0004101.1_g000004 Rmu_sc0004298.1_g000010 Rmu_sc0004507.1_g000008 Rmu_sc0004649.1_g000015 Rmu_sc0004719.1_g000006 Rmu_sc0004751.1_g000012 Rmu_sc0004821.1_g000005 Rmu_sc0004868.1_g000003 Rmu_sc0004876.1_g000023 Rmu_sc0004932.1_g000020 Rmu_sc0005093.1_g000020 Rmu_sc0005132.1_g000019 Rmu_sc0005274.1_g000001 Rmu_sc0005381.1_g000013 Rmu_sc0005693.1_g000009 Rmu_sc0005708.1_g000011 Rmu_sc0005834.1_g000016 Rmu_sc0005966.1_g000017 Rmu_sc0006173.1_g000033 Rmu_sc0006175.1_g000012 Rmu_sc0006590.1_g000004 Rmu_sc0006695.1_g000044 Rmu_sc0007061.1_g000002 Rmu_sc0007069.1_g000023 Rmu_sc0007216.1_g000006 Rmu_sc0008124.1_g000026 Rmu_sc0008148.1_g000028 Rmu_sc0008198.1_g000004 Rmu_sc0008423.1_g000003 Rmu_sc0008441.1_g000011 Rmu_sc0008707.1_g000005 Rmu_sc0009101.1_g000008 Rmu_sc0009240.1_g000039 Rmu_sc0009414.1_g000002 Rmu_sc0009628.1_g000001 Rmu_sc0010048.1_g000007 Rmu_sc0010275.1_g000001 Rmu_sc0010338.1_g000004 Rmu_sc0010659.1_g000005 Rmu_sc0010691.1_g000001 Rmu_sc0011023.1_g000006 Rmu_sc0011533.1_g000001 Rmu_sc0011901.1_g000001 Rmu_sc0012746.1_g000042 Rmu_sc0012773.1_g000005 Rmu_sc0012952.1_g000005 Rmu_sc0014568.1_g000002 Rmu_sc0014568.1_g000003 Rmu_sc0015188.1_g000004 Rmu_sc0019714.1_g000001 Rmu_sc0020148.1_g000003 Rmu_sc0020260.1_g000003 Rmu_sc0021213.1_g000002 Rmu_sc0022616.1_g000001 Rmu_ssc0000084.1_g000006 Rmu_ssc0000116.1_g000017 Rmu_ssc0000116.1_g000018 Rmu_ssc0000189.1_g000037 Rmu_ssc0000330.1_g000009 Rmu_ssc0000359.1_g000004 Rmu_ssc0000366.1_g000031 Rmu_ssc0000386.1_g000056 Rmu_ssc0000387.1_g000006 Rmu_ssc0000400.1_g000065 Rmu_ssc0000440.1_g000006 Rmu_ssc0000452.1_g000014
rosa_roxburghii Rroxscaffold_1G00020180 Rroxscaffold_2G00089580 Rroxscaffold_2G00143500 Rroxscaffold_3G00264360 Rroxscaffold_4G00316450 Rroxscaffold_4G00327050 Rroxscaffold_5G00350260 Rroxscaffold_5G00351750 Rroxscaffold_5G00364680 Rroxscaffold_5G00376220 Rroxscaffold_6G00391720
rosa_rugosa Rorug04G0096700 Rorug05G0284300 Rorug06G0059800 Rorug06G0059900 Rorug06G0060000 Rorug06G0060100 Rorug06G0060200 Rorug06G0127700 Rorug06G0243400
rosa_samantha Rh1AG033000 Rh1AG274600 Rh1DG069700 Rh2DG069900 Rh2DG210700 Rh2DG560100 Rh3AG245500 Rh3BG095400 Rh4AG018100 Rh4AG084900 Rh4AG177900 Rh4CG092300 Rh4CG194700 Rh5BG350600 Rh6BG362400 Rh7DG198200 Rh7DG403500
rosa_wichuraiana Rw1G008260 Rw1G035940 Rw2G027180 Rw4G003470 Rw4G010610 Rw5G037240 Rw6G036490 Rw7G015690 Rw7G028950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 441
AciI CCGC 2 cut(s) 439, 441
AclWI GGATC 1 cut(s) 451
AcsI RAATTY 1 cut(s) 318
AcuI CTGAAG 1 cut(s) 447
AcyI GRCGYC 1 cut(s) 368
AfiI CCNNNNNNNGG 7 cut(s) 470, 500, 554, 581, 608, 638, 665
AgsI TTSAA 2 cut(s) 316, 323
AjnI CCWGG 1 cut(s) 526
AluBI AGCT 3 cut(s) 125, 173, 425
AluI AGCT 3 cut(s) 125, 173, 425
Alw26I GTCTC 1 cut(s) 176
AlwI GGATC 1 cut(s) 451
AlwNI CAGNNNCTG 1 cut(s) 176
AoxI GGCC 1 cut(s) 95
ApeKI GCWGC 2 cut(s) 113, 173
ApoI RAATTY 1 cut(s) 318
Asp700I GAANNNNTTC 1 cut(s) 126
AspS9I GGNCC 1 cut(s) 43
AsuC2I CCSGG 5 cut(s) 471, 555, 582, 609, 639
AsuHPI GGTGA 2 cut(s) 103, 710
AvaII GGWCC 1 cut(s) 43
BbvI GCAGC 2 cut(s) 100, 160
BccI CCATC 1 cut(s) 343
BciT130I CCWGG 1 cut(s) 528
BcnI CCSGG 5 cut(s) 471, 555, 582, 609, 639
BcoDI GTCTC 1 cut(s) 176
BfaI CTAG 1 cut(s) 47
BfmI CTRYAG 1 cut(s) 186
BisI GCNGC 2 cut(s) 114, 174
BlsI GCNGC 2 cut(s) 115, 175
Bme1390I CCNGG 6 cut(s) 471, 528, 555, 582, 609, 639
Bme18I GGWCC 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 43
BmrFI CCNGG 6 cut(s) 471, 528, 555, 582, 609, 639
BmsI GCATC 4 cut(s) 40, 61, 155, 421
BpuEI CTTGAG 1 cut(s) 84
BpuMI CCSGG 5 cut(s) 471, 555, 582, 609, 639
BsaHI GRCGYC 1 cut(s) 368
BsaJI CCNNGG 8 cut(s) 219, 439, 469, 526, 553, 580, 607, 637
BsaWI WCCGGW 1 cut(s) 500
BsaXI ACNNNNNCTCC 2 cut(s) 507, 537
Bsc4I CCNNNNNNNGG 7 cut(s) 470, 500, 554, 581, 608, 638, 665
Bse1I ACTGG 3 cut(s) 37, 159, 392
BseBI CCWGG 1 cut(s) 528
BseDI CCNNGG 8 cut(s) 219, 439, 469, 526, 553, 580, 607, 637
BseGI GGATG 1 cut(s) 730
BseLI CCNNNNNNNGG 7 cut(s) 470, 500, 554, 581, 608, 638, 665
BseNI ACTGG 3 cut(s) 37, 159, 392
BseXI GCAGC 2 cut(s) 100, 160
Bsh1236I CGCG 1 cut(s) 441
BshFI GGCC 1 cut(s) 97
BsiSI CCGG 6 cut(s) 471, 501, 555, 582, 609, 639
BslFI GGGAC 1 cut(s) 659
BslI CCNNNNNNNGG 7 cut(s) 470, 500, 554, 581, 608, 638, 665
BsmAI GTCTC 1 cut(s) 176
BsmFI GGGAC 1 cut(s) 659
BsmI GAATGC 1 cut(s) 311
BsnI GGCC 1 cut(s) 97
Bsp143I GATC 1 cut(s) 443
BspACI CCGC 2 cut(s) 439, 441
BspANI GGCC 1 cut(s) 97
BspFNI CGCG 1 cut(s) 441
BspPI GGATC 1 cut(s) 451
BspQI GCTCTTC 2 cut(s) 132, 327
BsrI ACTGG 3 cut(s) 37, 159, 392
BssECI CCNNGG 8 cut(s) 219, 439, 469, 526, 553, 580, 607, 637
BssMI GATC 1 cut(s) 443
BssNI GRCGYC 1 cut(s) 368
BssT1I CCWWGG 1 cut(s) 219
Bst2UI CCWGG 1 cut(s) 528
Bst6I CTCTTC 3 cut(s) 132, 327, 697
BstACI GRCGYC 1 cut(s) 368
BstC8I GCNNGC 1 cut(s) 287
BstDSI CCRYGG 1 cut(s) 439
BstF5I GGATG 1 cut(s) 730
BstFNI CGCG 1 cut(s) 441
BstKTI GATC 1 cut(s) 446
BstMAI GTCTC 1 cut(s) 176
BstMBI GATC 1 cut(s) 443
BstMWI GCNNNNNNNGC 2 cut(s) 122, 431
BstNI CCWGG 1 cut(s) 528
BstNSI RCATGY 1 cut(s) 454
BstSCI CCNGG 6 cut(s) 469, 526, 553, 580, 607, 637
BstSFI CTRYAG 1 cut(s) 186
BstUI CGCG 1 cut(s) 441
BstV1I GCAGC 2 cut(s) 100, 160
BstX2I RGATCY 1 cut(s) 443
BstXI CCANNNNNNTGG 1 cut(s) 721
BstYI RGATCY 1 cut(s) 443
BsuRI GGCC 1 cut(s) 97
BtgI CCRYGG 1 cut(s) 439
BtsCI GGATG 1 cut(s) 730
Cac8I GCNNGC 1 cut(s) 287
CaiI CAGNNNCTG 1 cut(s) 176
Cfr13I GGNCC 1 cut(s) 43
Cfr42I CCGCGG 1 cut(s) 442
CseI GACGC 1 cut(s) 376
CviAII CATG 2 cut(s) 32, 451
DpnI GATC 1 cut(s) 445
DpnII GATC 1 cut(s) 443
Eam1104I CTCTTC 3 cut(s) 132, 327, 697
EarI CTCTTC 3 cut(s) 132, 327, 697
Eco130I CCWWGG 1 cut(s) 219
Eco147I AGGCCT 1 cut(s) 97
Eco47I GGWCC 1 cut(s) 43
Eco57I CTGAAG 1 cut(s) 447
EcoRII CCWGG 1 cut(s) 526
EcoT14I CCWWGG 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 219
FaeI CATG 2 cut(s) 35, 454
FalI AAGNNNNNCTT 2 cut(s) 111, 143
FaqI GGGAC 1 cut(s) 659
FatI CATG 2 cut(s) 31, 450
FauI CCCGC 1 cut(s) 446
FauNDI CATATG 1 cut(s) 720
Fnu4HI GCNGC 2 cut(s) 114, 174
FokI GGATG 1 cut(s) 737
Fsp4HI GCNGC 2 cut(s) 114, 174
FspBI CTAG 1 cut(s) 47
GluI GCNGC 2 cut(s) 114, 174
HaeIII GGCC 1 cut(s) 97
HapII CCGG 6 cut(s) 471, 501, 555, 582, 609, 639
HgaI GACGC 1 cut(s) 376
Hin1I GRCGYC 1 cut(s) 368
Hin1II CATG 2 cut(s) 35, 454
HinfI GANTC 4 cut(s) 26, 155, 701, 748
HpaII CCGG 6 cut(s) 471, 501, 555, 582, 609, 639
HphI GGTGA 2 cut(s) 103, 710
Hpy166II GTNNAC 1 cut(s) 64
Hpy188I TCNGA 1 cut(s) 132
Hpy188III TCNNGA 1 cut(s) 23
Hpy8I GTNNAC 1 cut(s) 64
HpyAV CCTTC 4 cut(s) 96, 103, 687, 697
HpyCH4IV ACGT 1 cut(s) 229
HpyCH4V TGCA 6 cut(s) 4, 53, 74, 289, 413, 434
HpyF10VI GCNNNNNNNGC 2 cut(s) 122, 431
HpySE526I ACGT 1 cut(s) 229
Hsp92I GRCGYC 1 cut(s) 368
Hsp92II CATG 2 cut(s) 35, 454
KspI CCGCGG 1 cut(s) 442
Kzo9I GATC 1 cut(s) 443
LguI GCTCTTC 2 cut(s) 132, 327
Lsp1109I GCAGC 2 cut(s) 100, 160
LweI GCATC 4 cut(s) 40, 61, 155, 421
MaeI CTAG 1 cut(s) 47
MaeII ACGT 1 cut(s) 229
MaeIII GTNAC 1 cut(s) 257
MalI GATC 1 cut(s) 445
MboI GATC 1 cut(s) 443
MboII GAAGA 5 cut(s) 119, 344, 440, 684, 770
MflI RGATCY 1 cut(s) 443
MluCI AATT 4 cut(s) 318, 382, 408, 742
MmeI TCCRAC 1 cut(s) 21
MnlI CCTC 9 cut(s) 52, 87, 108, 174, 229, 301, 528, 555, 757
MroXI GAANNNNTTC 1 cut(s) 126
MslI CAYNNNNRTG 2 cut(s) 255, 723
MspA1I CMGCKG 2 cut(s) 173, 441
MspI CCGG 6 cut(s) 471, 501, 555, 582, 609, 639
MspR9I CCNGG 6 cut(s) 471, 528, 555, 582, 609, 639
Mva1269I GAATGC 1 cut(s) 311
MvaI CCWGG 1 cut(s) 528
MvnI CGCG 1 cut(s) 441
MwoI GCNNNNNNNGC 2 cut(s) 122, 431
NciI CCSGG 5 cut(s) 471, 555, 582, 609, 639
NdeI CATATG 1 cut(s) 720
NdeII GATC 1 cut(s) 443
NlaIII CATG 2 cut(s) 35, 454
NmuCI GTSAC 1 cut(s) 257
NspI RCATGY 1 cut(s) 454
PceI AGGCCT 1 cut(s) 97
PciSI GCTCTTC 2 cut(s) 132, 327
PcsI WCGNNNNNNNCGW 1 cut(s) 253
PctI GAATGC 1 cut(s) 311
PdmI GAANNNNTTC 1 cut(s) 126
PfeI GAWTC 4 cut(s) 26, 155, 701, 748
PkrI GCNGC 2 cut(s) 115, 175
Psp6I CCWGG 1 cut(s) 526
PspGI CCWGG 1 cut(s) 526
PspPI GGNCC 1 cut(s) 43
PstNI CAGNNNCTG 1 cut(s) 176
PsuI RGATCY 1 cut(s) 443
PvuII CAGCTG 1 cut(s) 173
RseI CAYNNNNRTG 2 cut(s) 255, 723
SacII CCGCGG 1 cut(s) 442
SapI GCTCTTC 2 cut(s) 132, 327
SatI GCNGC 2 cut(s) 114, 174
Sau3AI GATC 1 cut(s) 443
Sau96I GGNCC 1 cut(s) 43
ScrFI CCNGG 6 cut(s) 471, 528, 555, 582, 609, 639
SfaNI GCATC 4 cut(s) 40, 61, 155, 421
SfcI CTRYAG 1 cut(s) 186
Sfr303I CCGCGG 1 cut(s) 442
SgrBI CCGCGG 1 cut(s) 442
SinI GGWCC 1 cut(s) 43
SmiMI CAYNNNNRTG 2 cut(s) 255, 723
SmlI CTYRAG 1 cut(s) 99
SmoI CTYRAG 1 cut(s) 99
Sse9I AATT 4 cut(s) 318, 382, 408, 742
SseBI AGGCCT 1 cut(s) 97
SsiI CCGC 2 cut(s) 439, 441
SspMI CTAG 1 cut(s) 47
StuI AGGCCT 1 cut(s) 97
StyD4I CCNGG 6 cut(s) 469, 526, 553, 580, 607, 637
StyI CCWWGG 1 cut(s) 219
TaiI ACGT 1 cut(s) 232
TaqI TCGA 1 cut(s) 247
TasI AATT 4 cut(s) 318, 382, 408, 742
TfiI GAWTC 4 cut(s) 26, 155, 701, 748
TseFI GTSAC 1 cut(s) 257
TseI GCWGC 2 cut(s) 113, 173
Tsp45I GTSAC 1 cut(s) 257
TspDTI ATGAA 1 cut(s) 771
TspGWI ACGGA 1 cut(s) 245
VpaK11BI GGWCC 1 cut(s) 43
XapI RAATTY 1 cut(s) 318
XceI RCATGY 1 cut(s) 454
XmnI GAANNNNTTC 1 cut(s) 126
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.