Rroxscaffold_5G00376220

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000127
Physical Location & Seq
Reverse (-)
56962554 .. 56963498
945 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00376220.1

Sequence Viewer

Length: 756 bp
ATGAAGAGAAAAGGGAGGACCAAAAGACACATGTTTCAAAGTTTTGATAGTTACGCTGTTGTGGAGGGCTTTGCACAATTTAAAGACATCCATAGCCATACATCCGGAGGAACATCAAATGAAGGAAGTCAACATGTGCACACACAACCAATTGCTGAAAATTCTCCCATCAACTTGGACATGGATGTAGATGAGGTAATTGCCGGTGAAACTGCAGATCCTAATGTGAGGCCTCAAGGAAGGAAGACTGCGAAAGAAGCAATTCGGAAAGGAAAGAAGGCAGCGAAAGATCAAAGTCATTTGTCAAGCGCTGTCGAGAGTTTAGTGAACAACCAAAAGAGGCAACCGCTAGCAAGAAAAAACTGGATGAGGAATTTGCTCGAAGTCTCCAAGAGGAAAATCAACGACAATTGTTATTGGTCAAGAAAGCAAAAGAAGATAGCGGAGAGAGAAGATCTTGTCTATTCCCACGACCTCCTTACCCCGGTGCATACCCACAACCACCTTGCCCCGGTGGATTCCTACAACCTCCATTCACCTGTGGATTCCCACTACCTTCCTTCACCGGTGGATTCCCACAACCCCCTTACCCCTTGTGGATACTATCCGCAACCACCTTACCCAGGGGGATATCCTACACAACCACAATTTTCACCTTTCTCTACGGGTGATTCCACCAACCCTAACCCTAATGATGACCCTTTAAACACAAATTGGATTCATAGAGAGGATGAGGATCATGATTTCAATAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

251

Amino Acids

28.48

Weight (kDa)

6.95

Isoelectric Point (pI)

47.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000127)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02381 FvH4_1g19463 FvH4_1g28433 FvH4_2g16143 FvH4_2g18491 FvH4_2g27711 FvH4_3g19631 FvH4_3g23573 FvH4_4g35743 FvH4_5g23701 FvH4_6g19603 FvH4_6g39781 FvH4_6g40561 FvH4_7g02563 FvH4_7g11472 FvH4_7g17530
rosa_chinensis RchiOBHm_Chr1g0315991 RchiOBHm_Chr1g0318371 RchiOBHm_Chr1g0328341 RchiOBHm_Chr1g0331431 RchiOBHm_Chr1g0344801 RchiOBHm_Chr1g0371461 RchiOBHm_Chr1g0379261 RchiOBHm_Chr2g0117661 RchiOBHm_Chr5g0011791 RchiOBHm_Chr5g0020991 RchiOBHm_Chr5g0060631 RchiOBHm_Chr5g0064181 RchiOBHm_Chr5g0080181 RchiOBHm_Chr6g0254691 RchiOBHm_Chr6g0260101 RchiOBHm_Chr6g0290901 RchiOBHm_Chr7g0201691
rosa_laevigata RLG00000003529 RLG00000009370 RLG00000013568
rosa_multiflora Rmu_co8437743.1_g000001 Rmu_sc0000063.1_g000028 Rmu_sc0000098.1_g000004 Rmu_sc0000166.1_g000028 Rmu_sc0000258.1_g000102 Rmu_sc0000288.1_g000018 Rmu_sc0000333.1_g000043 Rmu_sc0000451.1_g000011 Rmu_sc0000455.1_g000003 Rmu_sc0000479.1_g000002 Rmu_sc0000687.1_g000014 Rmu_sc0000733.1_g000024 Rmu_sc0000736.1_g000001 Rmu_sc0000745.1_g000017 Rmu_sc0000760.1_g000031 Rmu_sc0000776.1_g000044 Rmu_sc0000828.1_g000011 Rmu_sc0000830.1_g000027 Rmu_sc0000857.1_g000025 Rmu_sc0000864.1_g000013 Rmu_sc0001016.1_g000034 Rmu_sc0001016.1_g000035 Rmu_sc0001036.1_g000015 Rmu_sc0001096.1_g000020 Rmu_sc0001145.1_g000023 Rmu_sc0001167.1_g000057 Rmu_sc0001173.1_g000030 Rmu_sc0001260.1_g000006 Rmu_sc0001266.1_g000016 Rmu_sc0001346.1_g000003 Rmu_sc0001346.1_g000004 Rmu_sc0001386.1_g000005 Rmu_sc0001501.1_g000057 Rmu_sc0001565.1_g000058 Rmu_sc0001634.1_g000047 Rmu_sc0001699.1_g000018 Rmu_sc0001700.1_g000041 Rmu_sc0001700.1_g000055 Rmu_sc0001725.1_g000005 Rmu_sc0001823.1_g000005 Rmu_sc0001877.1_g000014 Rmu_sc0001942.1_g000059 Rmu_sc0001966.1_g000033 Rmu_sc0001998.1_g000009 Rmu_sc0002011.1_g000030 Rmu_sc0002147.1_g000007 Rmu_sc0002176.1_g000005 Rmu_sc0002235.1_g000097 Rmu_sc0002324.1_g000002 Rmu_sc0002352.1_g000011 Rmu_sc0002365.1_g000022 Rmu_sc0002548.1_g000007 Rmu_sc0002890.1_g000008 Rmu_sc0002936.1_g000003 Rmu_sc0002955.1_g000016 Rmu_sc0003160.1_g000032 Rmu_sc0003452.1_g000010 Rmu_sc0003490.1_g000023 Rmu_sc0003541.1_g000014 Rmu_sc0003555.1_g000014 Rmu_sc0003759.1_g000008 Rmu_sc0003843.1_g000001 Rmu_sc0003846.1_g000005 Rmu_sc0003890.1_g000019 Rmu_sc0003953.1_g000016 Rmu_sc0003967.1_g000001 Rmu_sc0004068.1_g000002 Rmu_sc0004101.1_g000004 Rmu_sc0004298.1_g000010 Rmu_sc0004507.1_g000008 Rmu_sc0004649.1_g000015 Rmu_sc0004719.1_g000006 Rmu_sc0004751.1_g000012 Rmu_sc0004821.1_g000005 Rmu_sc0004868.1_g000003 Rmu_sc0004876.1_g000023 Rmu_sc0004932.1_g000020 Rmu_sc0005093.1_g000020 Rmu_sc0005132.1_g000019 Rmu_sc0005274.1_g000001 Rmu_sc0005381.1_g000013 Rmu_sc0005693.1_g000009 Rmu_sc0005708.1_g000011 Rmu_sc0005834.1_g000016 Rmu_sc0005966.1_g000017 Rmu_sc0006173.1_g000033 Rmu_sc0006175.1_g000012 Rmu_sc0006590.1_g000004 Rmu_sc0006695.1_g000044 Rmu_sc0007061.1_g000002 Rmu_sc0007069.1_g000023 Rmu_sc0007216.1_g000006 Rmu_sc0008124.1_g000026 Rmu_sc0008148.1_g000028 Rmu_sc0008198.1_g000004 Rmu_sc0008423.1_g000003 Rmu_sc0008441.1_g000011 Rmu_sc0008707.1_g000005 Rmu_sc0009101.1_g000008 Rmu_sc0009240.1_g000039 Rmu_sc0009414.1_g000002 Rmu_sc0009628.1_g000001 Rmu_sc0010048.1_g000007 Rmu_sc0010275.1_g000001 Rmu_sc0010338.1_g000004 Rmu_sc0010659.1_g000005 Rmu_sc0010691.1_g000001 Rmu_sc0011023.1_g000006 Rmu_sc0011533.1_g000001 Rmu_sc0011901.1_g000001 Rmu_sc0012746.1_g000042 Rmu_sc0012773.1_g000005 Rmu_sc0012952.1_g000005 Rmu_sc0014568.1_g000002 Rmu_sc0014568.1_g000003 Rmu_sc0015188.1_g000004 Rmu_sc0019714.1_g000001 Rmu_sc0020148.1_g000003 Rmu_sc0020260.1_g000003 Rmu_sc0021213.1_g000002 Rmu_sc0022616.1_g000001 Rmu_ssc0000084.1_g000006 Rmu_ssc0000116.1_g000017 Rmu_ssc0000116.1_g000018 Rmu_ssc0000189.1_g000037 Rmu_ssc0000330.1_g000009 Rmu_ssc0000359.1_g000004 Rmu_ssc0000366.1_g000031 Rmu_ssc0000386.1_g000056 Rmu_ssc0000387.1_g000006 Rmu_ssc0000400.1_g000065 Rmu_ssc0000440.1_g000006 Rmu_ssc0000452.1_g000014
rosa_roxburghii Rroxscaffold_1G00020180 Rroxscaffold_2G00089580 Rroxscaffold_2G00143500 Rroxscaffold_3G00264360 Rroxscaffold_4G00316450 Rroxscaffold_4G00327050 Rroxscaffold_5G00350260 Rroxscaffold_5G00351750 Rroxscaffold_5G00364680 Rroxscaffold_5G00376220 Rroxscaffold_6G00391720
rosa_rugosa Rorug04G0096700 Rorug05G0284300 Rorug06G0059800 Rorug06G0059900 Rorug06G0060000 Rorug06G0060100 Rorug06G0060200 Rorug06G0127700 Rorug06G0243400
rosa_samantha Rh1AG033000 Rh1AG274600 Rh1DG069700 Rh2DG069900 Rh2DG210700 Rh2DG560100 Rh3AG245500 Rh3BG095400 Rh4AG018100 Rh4AG084900 Rh4AG177900 Rh4CG092300 Rh4CG194700 Rh5BG350600 Rh6BG362400 Rh7DG198200 Rh7DG403500
rosa_wichuraiana Rw1G008260 Rw1G035940 Rw2G027180 Rw4G003470 Rw4G010610 Rw5G037240 Rw6G036490 Rw7G015690 Rw7G028950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 104
AciI CCGC 3 cut(s) 347, 443, 608
AclWI GGATC 2 cut(s) 212, 744
AcsI RAATTY 2 cut(s) 160, 373
AfeI AGCGCT 1 cut(s) 310
AfiI CCNNNNNNNGG 3 cut(s) 484, 511, 623
AflIII ACRYGT 2 cut(s) 30, 133
AgeI ACCGGT 1 cut(s) 565
AgsI TTSAA 2 cut(s) 38, 748
AjnI CCWGG 1 cut(s) 622
Alw21I GWGCWC 1 cut(s) 141
Alw26I GTCTC 1 cut(s) 391
Alw44I GTGCAC 1 cut(s) 137
AlwI GGATC 2 cut(s) 212, 744
Aor13HI TCCGGA 1 cut(s) 104
Aor51HI AGCGCT 1 cut(s) 310
AoxI GGCC 1 cut(s) 230
ApaLI GTGCAC 1 cut(s) 137
ApeKI GCWGC 1 cut(s) 281
ApoI RAATTY 2 cut(s) 160, 373
AsiGI ACCGGT 1 cut(s) 565
Asp700I GAANNNNTTC 1 cut(s) 261
AspLEI GCGC 1 cut(s) 311
AspS9I GGNCC 1 cut(s) 18
AsuC2I CCSGG 2 cut(s) 485, 512
AsuHPI GGTGA 5 cut(s) 218, 528, 555, 645, 680
AsuNHI GCTAGC 1 cut(s) 349
AvaII GGWCC 1 cut(s) 18
BaeGI GKGCMC 1 cut(s) 141
BbsI GAAGAC 1 cut(s) 251
Bbv12I GWGCWC 1 cut(s) 141
BbvI GCAGC 1 cut(s) 293
BccI CCATC 1 cut(s) 176
BciT130I CCWGG 1 cut(s) 624
BciVI GTATCC 1 cut(s) 593
BcnI CCSGG 2 cut(s) 485, 512
BcoDI GTCTC 1 cut(s) 391
BfaI CTAG 1 cut(s) 350
BfmI CTRYAG 1 cut(s) 213
BfoI RGCGCY 1 cut(s) 312
BfuI GTATCC 1 cut(s) 593
BglII AGATCT 1 cut(s) 454
BisI GCNGC 1 cut(s) 282
BlsI GCNGC 1 cut(s) 283
Bme1390I CCNGG 3 cut(s) 485, 512, 624
Bme18I GGWCC 1 cut(s) 18
BmgT120I GGNCC 1 cut(s) 18
BmrFI CCNGG 3 cut(s) 485, 512, 624
BmtI GCTAGC 1 cut(s) 353
BpiI GAAGAC 1 cut(s) 251
BpuEI CTTGAG 1 cut(s) 219
BpuMI CCSGG 2 cut(s) 485, 512
BsaBI GATNNNNATC 1 cut(s) 735
BsaJI CCNNGG 4 cut(s) 483, 510, 622, 623
BsaWI WCCGGW 2 cut(s) 104, 565
Bsc4I CCNNNNNNNGG 3 cut(s) 484, 511, 623
Bse118I RCCGGY 2 cut(s) 203, 565
Bse1I ACTGG 1 cut(s) 368
Bse8I GATNNNNATC 1 cut(s) 735
BseAI TCCGGA 1 cut(s) 104
BseBI CCWGG 1 cut(s) 624
BseDI CCNNGG 4 cut(s) 483, 510, 622, 623
BseGI GGATG 5 cut(s) 87, 101, 190, 372, 736
BseJI GATNNNNATC 1 cut(s) 735
BseLI CCNNNNNNNGG 3 cut(s) 484, 511, 623
BseNI ACTGG 1 cut(s) 368
BseSI GKGCMC 1 cut(s) 141
BseXI GCAGC 1 cut(s) 293
BshFI GGCC 1 cut(s) 232
BshTI ACCGGT 1 cut(s) 565
BsiHKAI GWGCWC 1 cut(s) 141
BsiSI CCGG 5 cut(s) 105, 204, 485, 512, 566
BslI CCNNNNNNNGG 3 cut(s) 484, 511, 623
BsmAI GTCTC 1 cut(s) 391
BsnI GGCC 1 cut(s) 232
Bsp1286I GDGCHC 1 cut(s) 141
Bsp13I TCCGGA 1 cut(s) 104
Bsp143I GATC 4 cut(s) 217, 289, 454, 736
BspACI CCGC 3 cut(s) 347, 443, 608
BspANI GGCC 1 cut(s) 232
BspEI TCCGGA 1 cut(s) 104
BspHI TCATGA 1 cut(s) 739
BspMAI CTGCAG 1 cut(s) 217
BspOI GCTAGC 1 cut(s) 353
BspPI GGATC 2 cut(s) 212, 744
BsrFI RCCGGY 2 cut(s) 203, 565
BsrI ACTGG 1 cut(s) 368
BssAI RCCGGY 2 cut(s) 203, 565
BssECI CCNNGG 4 cut(s) 483, 510, 622, 623
BssMI GATC 4 cut(s) 217, 289, 454, 736
Bst2UI CCWGG 1 cut(s) 624
BstC8I GCNNGC 1 cut(s) 351
BstENI CCTNNNNNAGG 1 cut(s) 621
BstF5I GGATG 5 cut(s) 87, 101, 190, 372, 736
BstH2I RGCGCY 1 cut(s) 312
BstHHI GCGC 1 cut(s) 311
BstKTI GATC 4 cut(s) 220, 292, 457, 739
BstMAI GTCTC 1 cut(s) 391
BstMBI GATC 4 cut(s) 217, 289, 454, 736
BstMWI GCNNNNNNNGC 1 cut(s) 257
BstNI CCWGG 1 cut(s) 624
BstNSI RCATGY 2 cut(s) 34, 137
BstSCI CCNGG 3 cut(s) 483, 510, 622
BstSFI CTRYAG 1 cut(s) 213
BstSLI GKGCMC 1 cut(s) 141
BstV1I GCAGC 1 cut(s) 293
BstV2I GAAGAC 1 cut(s) 251
BstX2I RGATCY 2 cut(s) 217, 454
BstXI CCANNNNNNTGG 1 cut(s) 175
BstYI RGATCY 2 cut(s) 217, 454
BsuI GTATCC 1 cut(s) 593
BsuRI GGCC 1 cut(s) 232
BtsCI GGATG 5 cut(s) 87, 101, 190, 372, 736
Cac8I GCNNGC 1 cut(s) 351
CciI TCATGA 1 cut(s) 739
CfoI GCGC 1 cut(s) 311
Cfr10I RCCGGY 2 cut(s) 203, 565
Cfr13I GGNCC 1 cut(s) 18
CspAI ACCGGT 1 cut(s) 565
CviAII CATG 4 cut(s) 31, 134, 181, 740
CviJI RGCY 3 cut(s) 69, 96, 232
CviKI_1 RGCY 3 cut(s) 69, 96, 232
DpnI GATC 4 cut(s) 219, 291, 456, 738
DpnII GATC 4 cut(s) 217, 289, 454, 736
DraI TTTAAA 2 cut(s) 82, 705
Eco147I AGGCCT 1 cut(s) 232
Eco32I GATATC 1 cut(s) 632
Eco47I GGWCC 1 cut(s) 18
Eco47III AGCGCT 1 cut(s) 310
EcoNI CCTNNNNNAGG 1 cut(s) 621
EcoRII CCWGG 1 cut(s) 622
EcoRV GATATC 1 cut(s) 632
FaeI CATG 4 cut(s) 34, 137, 184, 743
FaiI YATR 8 cut(s) 32, 93, 99, 135, 182, 492, 723, 741
FatI CATG 4 cut(s) 30, 133, 180, 739
Fnu4HI GCNGC 1 cut(s) 282
FokI GGATG 5 cut(s) 74, 88, 197, 379, 743
Fsp4HI GCNGC 1 cut(s) 282
FspBI CTAG 1 cut(s) 350
GlaI GCGC 1 cut(s) 310
GluI GCNGC 1 cut(s) 282
HaeII RGCGCY 1 cut(s) 312
HaeIII GGCC 1 cut(s) 232
HapII CCGG 5 cut(s) 105, 204, 485, 512, 566
HhaI GCGC 1 cut(s) 311
Hin1II CATG 4 cut(s) 34, 137, 184, 743
Hin6I GCGC 1 cut(s) 309
HinP1I GCGC 1 cut(s) 309
HincII GTYRAC 1 cut(s) 131
HindII GTYRAC 1 cut(s) 131
HinfI GANTC 5 cut(s) 518, 545, 572, 671, 718
HpaII CCGG 5 cut(s) 105, 204, 485, 512, 566
HphI GGTGA 5 cut(s) 218, 528, 555, 645, 680
Hpy166II GTNNAC 3 cut(s) 131, 139, 328
Hpy188I TCNGA 1 cut(s) 267
Hpy188III TCNNGA 4 cut(s) 105, 316, 423, 740
Hpy8I GTNNAC 3 cut(s) 131, 139, 328
HpyAV CCTTC 5 cut(s) 116, 234, 271, 566, 570
HpyCH4V TGCA 4 cut(s) 74, 139, 215, 490
HpyF10VI GCNNNNNNNGC 1 cut(s) 257
Hsp92II CATG 4 cut(s) 34, 137, 184, 743
HspAI GCGC 1 cut(s) 309
Kpn2I TCCGGA 1 cut(s) 104
Kzo9I GATC 4 cut(s) 217, 289, 454, 736
LpnPI CCDG 9 cut(s) 118, 217, 349, 498, 525, 552, 579, 609, 636
Lsp1109I GCAGC 1 cut(s) 293
MaeI CTAG 1 cut(s) 350
MaeIII GTNAC 1 cut(s) 50
MalI GATC 4 cut(s) 219, 291, 456, 738
MboI GATC 4 cut(s) 217, 289, 454, 736
MboII GAAGA 4 cut(s) 16, 256, 448, 464
MfeI CAATTG 2 cut(s) 150, 409
MflI RGATCY 2 cut(s) 217, 454
MhlI GDGCHC 1 cut(s) 141
MroI TCCGGA 1 cut(s) 104
MroXI GAANNNNTTC 1 cut(s) 261
MseI TTAA 2 cut(s) 81, 704
MspI CCGG 5 cut(s) 105, 204, 485, 512, 566
MspR9I CCNGG 3 cut(s) 485, 512, 624
MunI CAATTG 2 cut(s) 150, 409
MvaI CCWGG 1 cut(s) 624
MwoI GCNNNNNNNGC 1 cut(s) 257
NciI CCSGG 2 cut(s) 485, 512
NdeII GATC 4 cut(s) 217, 289, 454, 736
NheI GCTAGC 1 cut(s) 349
NlaIII CATG 4 cut(s) 34, 137, 184, 743
NspI RCATGY 2 cut(s) 34, 137
PagI TCATGA 1 cut(s) 739
PasI CCCWGGG 1 cut(s) 623
PceI AGGCCT 1 cut(s) 232
PciI ACATGT 2 cut(s) 30, 133
PdmI GAANNNNTTC 1 cut(s) 261
PfeI GAWTC 5 cut(s) 518, 545, 572, 671, 718
PinAI ACCGGT 1 cut(s) 565
PkrI GCNGC 1 cut(s) 283
PscI ACATGT 2 cut(s) 30, 133
Psp6I CCWGG 1 cut(s) 622
PspGI CCWGG 1 cut(s) 622
PspPI GGNCC 1 cut(s) 18
PstI CTGCAG 1 cut(s) 217
PsuI RGATCY 2 cut(s) 217, 454
SaqAI TTAA 2 cut(s) 81, 704
SatI GCNGC 1 cut(s) 282
Sau3AI GATC 4 cut(s) 217, 289, 454, 736
Sau96I GGNCC 1 cut(s) 18
ScrFI CCNGG 3 cut(s) 485, 512, 624
SduI GDGCHC 1 cut(s) 141
SetI ASST 8 cut(s) 198, 477, 507, 531, 541, 558, 619, 658
SfcI CTRYAG 1 cut(s) 213
SgrAI CRCCGGYG 1 cut(s) 565
SinI GGWCC 1 cut(s) 18
SmlI CTYRAG 1 cut(s) 234
SmoI CTYRAG 1 cut(s) 234
SseBI AGGCCT 1 cut(s) 232
SsiI CCGC 3 cut(s) 347, 443, 608
SspMI CTAG 1 cut(s) 350
StuI AGGCCT 1 cut(s) 232
StyD4I CCNGG 3 cut(s) 483, 510, 622
TaqI TCGA 2 cut(s) 315, 381
TfiI GAWTC 5 cut(s) 518, 545, 572, 671, 718
Tru1I TTAA 2 cut(s) 81, 704
Tru9I TTAA 2 cut(s) 81, 704
TseI GCWGC 1 cut(s) 281
TspDTI ATGAA 3 cut(s) 17, 135, 710
VneI GTGCAC 1 cut(s) 137
VpaK11BI GGWCC 1 cut(s) 18
XagI CCTNNNNNAGG 1 cut(s) 621
XapI RAATTY 2 cut(s) 160, 373
XceI RCATGY 2 cut(s) 34, 137
XmnI GAANNNNTTC 1 cut(s) 261
XspI CTAG 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.