Rmu_sc0011901.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011901.1
OG0000127
Physical Location & Seq
Forward (+)
59 .. 930
872 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011901.1_g000001.1.cds

Sequence Viewer

Length: 828 bp
atgaccaaatcgaaaggaaaacaaaaaaaaggagatttcattagtttagaatgttacgagattgttaaggggtttcaacaatttgatgacattccaaatcattcctcttcggctggaggaacctccaggggaggaactcaacggatgcacacacaacaatccactcctgattctcgtgtccagttggacatagatgcagatgaggtaaacgccgatgcaactccaaatccttcggtgaggcctcaaggaaagaaagctgccaaagaagctcttcggaaaggaaagaaagcatctaatgattccagtcctctgacagccgctgtggagactatagcaaccaaccaaacatcaatgatgtctgccaaggagaaacgtgatgaggaatatgctcgacatctccgtgaccaacaacaacgagattatatacgcttgcaaatggatatgcgaaacgaggcattcaaaattcaagagagggaagagcatgaggtaaacgtcgatgcaactccaaatccttcggtgaggcctcaaggaaagaaagctgccaaagaagctcttcggaaaggaaagaaagcatctaatgattccagtcctctgacagccgctgtggagactatagcaaccaaccaaacatcaatgatgtctgccaaggagaaacgtgatgaggaatatgctcgacatctccgtgaccaacaacaacgagattatatacgcttgcaaatggatatgcgaaacgaggcattcaaaattcaagagagggaagagcgtattatggagatggacacaagtaagatgacgccaaccaaaaagaattactggcaaagaaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

275

Amino Acids

31.44

Weight (kDa)

9.35

Isoelectric Point (pI)

44.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000127)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02381 FvH4_1g19463 FvH4_1g28433 FvH4_2g16143 FvH4_2g18491 FvH4_2g27711 FvH4_3g19631 FvH4_3g23573 FvH4_4g35743 FvH4_5g23701 FvH4_6g19603 FvH4_6g39781 FvH4_6g40561 FvH4_7g02563 FvH4_7g11472 FvH4_7g17530
rosa_chinensis RchiOBHm_Chr1g0315991 RchiOBHm_Chr1g0318371 RchiOBHm_Chr1g0328341 RchiOBHm_Chr1g0331431 RchiOBHm_Chr1g0344801 RchiOBHm_Chr1g0371461 RchiOBHm_Chr1g0379261 RchiOBHm_Chr2g0117661 RchiOBHm_Chr5g0011791 RchiOBHm_Chr5g0020991 RchiOBHm_Chr5g0060631 RchiOBHm_Chr5g0064181 RchiOBHm_Chr5g0080181 RchiOBHm_Chr6g0254691 RchiOBHm_Chr6g0260101 RchiOBHm_Chr6g0290901 RchiOBHm_Chr7g0201691
rosa_laevigata RLG00000003529 RLG00000009370 RLG00000013568
rosa_multiflora Rmu_co8437743.1_g000001 Rmu_sc0000063.1_g000028 Rmu_sc0000098.1_g000004 Rmu_sc0000166.1_g000028 Rmu_sc0000258.1_g000102 Rmu_sc0000288.1_g000018 Rmu_sc0000333.1_g000043 Rmu_sc0000451.1_g000011 Rmu_sc0000455.1_g000003 Rmu_sc0000479.1_g000002 Rmu_sc0000687.1_g000014 Rmu_sc0000733.1_g000024 Rmu_sc0000736.1_g000001 Rmu_sc0000745.1_g000017 Rmu_sc0000760.1_g000031 Rmu_sc0000776.1_g000044 Rmu_sc0000828.1_g000011 Rmu_sc0000830.1_g000027 Rmu_sc0000857.1_g000025 Rmu_sc0000864.1_g000013 Rmu_sc0001016.1_g000034 Rmu_sc0001016.1_g000035 Rmu_sc0001036.1_g000015 Rmu_sc0001096.1_g000020 Rmu_sc0001145.1_g000023 Rmu_sc0001167.1_g000057 Rmu_sc0001173.1_g000030 Rmu_sc0001260.1_g000006 Rmu_sc0001266.1_g000016 Rmu_sc0001346.1_g000003 Rmu_sc0001346.1_g000004 Rmu_sc0001386.1_g000005 Rmu_sc0001501.1_g000057 Rmu_sc0001565.1_g000058 Rmu_sc0001634.1_g000047 Rmu_sc0001699.1_g000018 Rmu_sc0001700.1_g000041 Rmu_sc0001700.1_g000055 Rmu_sc0001725.1_g000005 Rmu_sc0001823.1_g000005 Rmu_sc0001877.1_g000014 Rmu_sc0001942.1_g000059 Rmu_sc0001966.1_g000033 Rmu_sc0001998.1_g000009 Rmu_sc0002011.1_g000030 Rmu_sc0002147.1_g000007 Rmu_sc0002176.1_g000005 Rmu_sc0002235.1_g000097 Rmu_sc0002324.1_g000002 Rmu_sc0002352.1_g000011 Rmu_sc0002365.1_g000022 Rmu_sc0002548.1_g000007 Rmu_sc0002890.1_g000008 Rmu_sc0002936.1_g000003 Rmu_sc0002955.1_g000016 Rmu_sc0003160.1_g000032 Rmu_sc0003452.1_g000010 Rmu_sc0003490.1_g000023 Rmu_sc0003541.1_g000014 Rmu_sc0003555.1_g000014 Rmu_sc0003759.1_g000008 Rmu_sc0003843.1_g000001 Rmu_sc0003846.1_g000005 Rmu_sc0003890.1_g000019 Rmu_sc0003953.1_g000016 Rmu_sc0003967.1_g000001 Rmu_sc0004068.1_g000002 Rmu_sc0004101.1_g000004 Rmu_sc0004298.1_g000010 Rmu_sc0004507.1_g000008 Rmu_sc0004649.1_g000015 Rmu_sc0004719.1_g000006 Rmu_sc0004751.1_g000012 Rmu_sc0004821.1_g000005 Rmu_sc0004868.1_g000003 Rmu_sc0004876.1_g000023 Rmu_sc0004932.1_g000020 Rmu_sc0005093.1_g000020 Rmu_sc0005132.1_g000019 Rmu_sc0005274.1_g000001 Rmu_sc0005381.1_g000013 Rmu_sc0005693.1_g000009 Rmu_sc0005708.1_g000011 Rmu_sc0005834.1_g000016 Rmu_sc0005966.1_g000017 Rmu_sc0006173.1_g000033 Rmu_sc0006175.1_g000012 Rmu_sc0006590.1_g000004 Rmu_sc0006695.1_g000044 Rmu_sc0007061.1_g000002 Rmu_sc0007069.1_g000023 Rmu_sc0007216.1_g000006 Rmu_sc0008124.1_g000026 Rmu_sc0008148.1_g000028 Rmu_sc0008198.1_g000004 Rmu_sc0008423.1_g000003 Rmu_sc0008441.1_g000011 Rmu_sc0008707.1_g000005 Rmu_sc0009101.1_g000008 Rmu_sc0009240.1_g000039 Rmu_sc0009414.1_g000002 Rmu_sc0009628.1_g000001 Rmu_sc0010048.1_g000007 Rmu_sc0010275.1_g000001 Rmu_sc0010338.1_g000004 Rmu_sc0010659.1_g000005 Rmu_sc0010691.1_g000001 Rmu_sc0011023.1_g000006 Rmu_sc0011533.1_g000001 Rmu_sc0011901.1_g000001 Rmu_sc0012746.1_g000042 Rmu_sc0012773.1_g000005 Rmu_sc0012952.1_g000005 Rmu_sc0014568.1_g000002 Rmu_sc0014568.1_g000003 Rmu_sc0015188.1_g000004 Rmu_sc0019714.1_g000001 Rmu_sc0020148.1_g000003 Rmu_sc0020260.1_g000003 Rmu_sc0021213.1_g000002 Rmu_sc0022616.1_g000001 Rmu_ssc0000084.1_g000006 Rmu_ssc0000116.1_g000017 Rmu_ssc0000116.1_g000018 Rmu_ssc0000189.1_g000037 Rmu_ssc0000330.1_g000009 Rmu_ssc0000359.1_g000004 Rmu_ssc0000366.1_g000031 Rmu_ssc0000386.1_g000056 Rmu_ssc0000387.1_g000006 Rmu_ssc0000400.1_g000065 Rmu_ssc0000440.1_g000006 Rmu_ssc0000452.1_g000014
rosa_roxburghii Rroxscaffold_1G00020180 Rroxscaffold_2G00089580 Rroxscaffold_2G00143500 Rroxscaffold_3G00264360 Rroxscaffold_4G00316450 Rroxscaffold_4G00327050 Rroxscaffold_5G00350260 Rroxscaffold_5G00351750 Rroxscaffold_5G00364680 Rroxscaffold_5G00376220 Rroxscaffold_6G00391720
rosa_rugosa Rorug04G0096700 Rorug05G0284300 Rorug06G0059800 Rorug06G0059900 Rorug06G0060000 Rorug06G0060100 Rorug06G0060200 Rorug06G0127700 Rorug06G0243400
rosa_samantha Rh1AG033000 Rh1AG274600 Rh1DG069700 Rh2DG069900 Rh2DG210700 Rh2DG560100 Rh3AG245500 Rh3BG095400 Rh4AG018100 Rh4AG084900 Rh4AG177900 Rh4CG092300 Rh4CG194700 Rh5BG350600 Rh6BG362400 Rh7DG198200 Rh7DG403500
rosa_wichuraiana Rw1G008260 Rw1G035940 Rw2G027180 Rw4G003470 Rw4G010610 Rw5G037240 Rw6G036490 Rw7G015690 Rw7G028950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 318, 600
AcsI RAATTY 2 cut(s) 462, 744
AcyI GRCGYC 1 cut(s) 794
AgsI TTSAA 5 cut(s) 77, 460, 467, 742, 749
AjnI CCWGG 1 cut(s) 125
AluBI AGCT 4 cut(s) 257, 269, 539, 551
AluI AGCT 4 cut(s) 257, 269, 539, 551
Alw26I GTCTC 2 cut(s) 320, 602
AlwNI CAGNNNCTG 2 cut(s) 320, 602
AoxI GGCC 2 cut(s) 239, 521
ApeKI GCWGC 2 cut(s) 257, 539
ApoI RAATTY 2 cut(s) 462, 744
Asp700I GAANNNNTTC 2 cut(s) 270, 552
AsuHPI GGTGA 2 cut(s) 247, 529
BauI CACGAG 1 cut(s) 174
BbvI GCAGC 2 cut(s) 244, 526
BccI CCATC 1 cut(s) 769
BciT130I CCWGG 1 cut(s) 127
BcoDI GTCTC 2 cut(s) 320, 602
BfmI CTRYAG 2 cut(s) 330, 612
BisI GCNGC 4 cut(s) 258, 318, 540, 600
BlsI GCNGC 4 cut(s) 259, 319, 541, 601
Bme1390I CCNGG 1 cut(s) 127
BmiI GGNNCC 1 cut(s) 121
BmrFI CCNGG 1 cut(s) 127
BmsI GCATC 6 cut(s) 135, 184, 205, 299, 487, 581
BpmI CTGGAG 2 cut(s) 109, 135
BpuEI CTTGAG 2 cut(s) 228, 510
BsaHI GRCGYC 1 cut(s) 794
BsaJI CCNNGG 3 cut(s) 126, 363, 645
Bse1I ACTGG 4 cut(s) 181, 303, 585, 818
BseBI CCWGG 1 cut(s) 127
BseDI CCNNGG 3 cut(s) 126, 363, 645
BseGI GGATG 1 cut(s) 150
BseNI ACTGG 4 cut(s) 181, 303, 585, 818
BseXI GCAGC 2 cut(s) 244, 526
BshFI GGCC 2 cut(s) 241, 523
BsmAI GTCTC 2 cut(s) 320, 602
BsmI GAATGC 2 cut(s) 455, 737
BsnI GGCC 2 cut(s) 241, 523
BspACI CCGC 2 cut(s) 318, 600
BspANI GGCC 2 cut(s) 241, 523
BspLI GGNNCC 1 cut(s) 121
BspQI GCTCTTC 4 cut(s) 276, 471, 558, 753
BsrI ACTGG 4 cut(s) 181, 303, 585, 818
BssECI CCNNGG 3 cut(s) 126, 363, 645
BssNI GRCGYC 1 cut(s) 794
BssSI CACGAG 1 cut(s) 174
BssT1I CCWWGG 2 cut(s) 363, 645
Bst2BI CACGAG 1 cut(s) 174
Bst2UI CCWGG 1 cut(s) 127
Bst6I CTCTTC 5 cut(s) 112, 276, 471, 558, 753
BstACI GRCGYC 1 cut(s) 794
BstC8I GCNNGC 2 cut(s) 431, 713
BstF5I GGATG 1 cut(s) 150
BstMAI GTCTC 2 cut(s) 320, 602
BstMWI GCNNNNNNNGC 2 cut(s) 266, 548
BstNI CCWGG 1 cut(s) 127
BstSCI CCNGG 1 cut(s) 125
BstSFI CTRYAG 2 cut(s) 330, 612
BstV1I GCAGC 2 cut(s) 244, 526
BsuRI GGCC 2 cut(s) 241, 523
BtsCI GGATG 1 cut(s) 150
Cac8I GCNNGC 2 cut(s) 431, 713
CaiI CAGNNNCTG 2 cut(s) 320, 602
CseI GACGC 1 cut(s) 802
CviAII CATG 1 cut(s) 482
CviJI RGCY 9 cut(s) 113, 241, 257, 269, 317, 523, 539, 551, 599
CviKI_1 RGCY 9 cut(s) 113, 241, 257, 269, 317, 523, 539, 551, 599
Eam1104I CTCTTC 5 cut(s) 112, 276, 471, 558, 753
EarI CTCTTC 5 cut(s) 112, 276, 471, 558, 753
Eco130I CCWWGG 2 cut(s) 363, 645
Eco147I AGGCCT 2 cut(s) 241, 523
EcoRII CCWGG 1 cut(s) 125
EcoT14I CCWWGG 2 cut(s) 363, 645
ErhI CCWWGG 2 cut(s) 363, 645
FaeI CATG 1 cut(s) 485
FalI AAGNNNNNCTT 4 cut(s) 255, 287, 537, 569
FatI CATG 1 cut(s) 481
Fnu4HI GCNGC 4 cut(s) 258, 318, 540, 600
FokI GGATG 1 cut(s) 157
Fsp4HI GCNGC 4 cut(s) 258, 318, 540, 600
GluI GCNGC 4 cut(s) 258, 318, 540, 600
GsuI CTGGAG 2 cut(s) 109, 135
HaeIII GGCC 2 cut(s) 241, 523
HgaI GACGC 1 cut(s) 802
Hin1I GRCGYC 1 cut(s) 794
Hin1II CATG 1 cut(s) 485
HinfI GANTC 3 cut(s) 170, 299, 581
HphI GGTGA 2 cut(s) 247, 529
Hpy166II GTNNAC 2 cut(s) 208, 490
Hpy188I TCNGA 4 cut(s) 276, 312, 558, 594
Hpy188III TCNNGA 3 cut(s) 167, 467, 749
Hpy8I GTNNAC 2 cut(s) 208, 490
Hpy99I CGWCG 1 cut(s) 497
HpyAV CCTTC 2 cut(s) 240, 522
HpyCH4IV ACGT 3 cut(s) 373, 492, 655
HpyCH4V TGCA 6 cut(s) 148, 197, 218, 433, 500, 715
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 548
HpySE526I ACGT 3 cut(s) 373, 492, 655
Hsp92I GRCGYC 1 cut(s) 794
Hsp92II CATG 1 cut(s) 485
LguI GCTCTTC 4 cut(s) 276, 471, 558, 753
LpnPI CCDG 8 cut(s) 99, 112, 139, 180, 194, 316, 598, 799
Lsp1109I GCAGC 2 cut(s) 244, 526
LweI GCATC 6 cut(s) 135, 184, 205, 299, 487, 581
MaeII ACGT 3 cut(s) 373, 492, 655
MaeIII GTNAC 3 cut(s) 53, 401, 683
MboII GAAGA 5 cut(s) 99, 263, 488, 545, 770
MluCI AATT 4 cut(s) 80, 462, 744, 808
MmeI TCCRAC 1 cut(s) 165
MroXI GAANNNNTTC 2 cut(s) 270, 552
MseI TTAA 1 cut(s) 66
MslI CAYNNNNRTG 2 cut(s) 399, 681
MspA1I CMGCKG 2 cut(s) 320, 602
MspR9I CCNGG 1 cut(s) 127
Mva1269I GAATGC 2 cut(s) 455, 737
MvaI CCWGG 1 cut(s) 127
MwoI GCNNNNNNNGC 2 cut(s) 266, 548
NlaIII CATG 1 cut(s) 485
NlaIV GGNNCC 1 cut(s) 121
NmuCI GTSAC 2 cut(s) 401, 683
PceI AGGCCT 2 cut(s) 241, 523
PciSI GCTCTTC 4 cut(s) 276, 471, 558, 753
PcsI WCGNNNNNNNCGW 2 cut(s) 397, 679
PctI GAATGC 2 cut(s) 455, 737
PdmI GAANNNNTTC 2 cut(s) 270, 552
PfeI GAWTC 3 cut(s) 170, 299, 581
PkrI GCNGC 4 cut(s) 259, 319, 541, 601
Psp6I CCWGG 1 cut(s) 125
PspGI CCWGG 1 cut(s) 125
PspN4I GGNNCC 1 cut(s) 121
PstNI CAGNNNCTG 2 cut(s) 320, 602
RseI CAYNNNNRTG 2 cut(s) 399, 681
SapI GCTCTTC 4 cut(s) 276, 471, 558, 753
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 4 cut(s) 258, 318, 540, 600
ScrFI CCNGG 1 cut(s) 127
SfaNI GCATC 6 cut(s) 135, 184, 205, 299, 487, 581
SfcI CTRYAG 2 cut(s) 330, 612
SmiMI CAYNNNNRTG 2 cut(s) 399, 681
SmlI CTYRAG 2 cut(s) 243, 525
SmoI CTYRAG 2 cut(s) 243, 525
Sse9I AATT 4 cut(s) 80, 462, 744, 808
SseBI AGGCCT 2 cut(s) 241, 523
SsiI CCGC 2 cut(s) 318, 600
StuI AGGCCT 2 cut(s) 241, 523
StyD4I CCNGG 1 cut(s) 125
StyI CCWWGG 2 cut(s) 363, 645
TaiI ACGT 3 cut(s) 376, 495, 658
TaqI TCGA 4 cut(s) 11, 391, 495, 673
TasI AATT 4 cut(s) 80, 462, 744, 808
TauI GCSGC 2 cut(s) 320, 602
TfiI GAWTC 3 cut(s) 170, 299, 581
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TseFI GTSAC 2 cut(s) 401, 683
TseI GCWGC 2 cut(s) 257, 539
Tsp45I GTSAC 2 cut(s) 401, 683
TspDTI ATGAA 1 cut(s) 28
TspGWI ACGGA 3 cut(s) 157, 389, 671
XapI RAATTY 2 cut(s) 462, 744
XmnI GAANNNNTTC 2 cut(s) 270, 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.