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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 697 |
| Acc36I | ACCTGC | 2 cut(s) | 24, 725 |
| AccI | GTMKAC | 1 cut(s) | 394 |
| AccII | CGCG | 1 cut(s) | 195 |
| AciI | CCGC | 6 cut(s) | 31, 95, 163, 166, 187, 193 |
| AcoI | YGGCCR | 1 cut(s) | 449 |
| AfaI | GTAC | 2 cut(s) | 244, 439 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 177, 735 |
| AgsI | TTSAA | 1 cut(s) | 503 |
| AjnI | CCWGG | 7 cut(s) | 289, 356, 446, 451, 541, 651, 728 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 717, 749 |
| AluBI | AGCT | 5 cut(s) | 19, 218, 583, 679, 770 |
| AluI | AGCT | 5 cut(s) | 19, 218, 583, 679, 770 |
| Alw26I | GTCTC | 2 cut(s) | 42, 741 |
| AoxI | GGCC | 2 cut(s) | 227, 449 |
| ApeKI | GCWGC | 1 cut(s) | 286 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 717, 749 |
| AspLEI | GCGC | 3 cut(s) | 11, 197, 698 |
| AspS9I | GGNCC | 4 cut(s) | 227, 260, 559, 725 |
| AsuC2I | CCSGG | 1 cut(s) | 178 |
| AsuHPI | GGTGA | 1 cut(s) | 116 |
| AvaII | GGWCC | 3 cut(s) | 260, 559, 725 |
| BalI | TGGCCA | 1 cut(s) | 451 |
| BauI | CACGAG | 1 cut(s) | 633 |
| BbvI | GCAGC | 1 cut(s) | 273 |
| BccI | CCATC | 2 cut(s) | 355, 662 |
| BceAI | ACGGC | 2 cut(s) | 105, 163 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 732, 766 |
| BciT130I | CCWGG | 7 cut(s) | 291, 358, 448, 453, 543, 653, 730 |
| BciVI | GTATCC | 1 cut(s) | 732 |
| BcnI | CCSGG | 1 cut(s) | 178 |
| BcoDI | GTCTC | 2 cut(s) | 42, 741 |
| BfaI | CTAG | 1 cut(s) | 309 |
| BfuAI | ACCTGC | 2 cut(s) | 24, 725 |
| BfuI | GTATCC | 1 cut(s) | 732 |
| BisI | GCNGC | 2 cut(s) | 166, 287 |
| BlsI | GCNGC | 2 cut(s) | 167, 288 |
| BmcAI | AGTACT | 1 cut(s) | 439 |
| Bme1390I | CCNGG | 8 cut(s) | 178, 291, 358, 448, 453, 543, 653, 730 |
| Bme18I | GGWCC | 3 cut(s) | 260, 559, 725 |
| BmgT120I | GGNCC | 4 cut(s) | 227, 260, 559, 725 |
| BmiI | GGNNCC | 4 cut(s) | 262, 414, 726, 727 |
| BmrFI | CCNGG | 8 cut(s) | 178, 291, 358, 448, 453, 543, 653, 730 |
| BmsI | GCATC | 5 cut(s) | 20, 190, 498, 520, 638 |
| BpmI | CTGGAG | 2 cut(s) | 525, 674 |
| BpuEI | CTTGAG | 4 cut(s) | 344, 508, 537, 592 |
| BpuMI | CCSGG | 1 cut(s) | 178 |
| BsaI | GGTCTC | 1 cut(s) | 42 |
| BsaJI | CCNNGG | 2 cut(s) | 728, 729 |
| BsaWI | WCCGGW | 1 cut(s) | 102 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 182, 212 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 177, 735 |
| Bse1I | ACTGG | 3 cut(s) | 394, 465, 480 |
| Bse3DI | GCAATG | 1 cut(s) | 371 |
| BseBI | CCWGG | 7 cut(s) | 291, 358, 448, 453, 543, 653, 730 |
| BseDI | CCNNGG | 2 cut(s) | 728, 729 |
| BseGI | GGATG | 2 cut(s) | 513, 673 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 177, 735 |
| BseMI | GCAATG | 1 cut(s) | 371 |
| BseNI | ACTGG | 3 cut(s) | 394, 465, 480 |
| BseRI | GAGGAG | 2 cut(s) | 149, 759 |
| BseXI | GCAGC | 1 cut(s) | 273 |
| Bsh1236I | CGCG | 1 cut(s) | 195 |
| Bsh1285I | CGRYCG | 1 cut(s) | 103 |
| BshFI | GGCC | 2 cut(s) | 229, 451 |
| BsiEI | CGRYCG | 1 cut(s) | 103 |
| BsiSI | CCGG | 3 cut(s) | 103, 178, 230 |
| BslFI | GGGAC | 1 cut(s) | 738 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 177, 735 |
| BsmAI | GTCTC | 2 cut(s) | 42, 741 |
| BsmFI | GGGAC | 1 cut(s) | 738 |
| BsmI | GAATGC | 1 cut(s) | 345 |
| BsnI | GGCC | 2 cut(s) | 229, 451 |
| Bso31I | GGTCTC | 1 cut(s) | 42 |
| Bsp143I | GATC | 2 cut(s) | 70, 154 |
| BspACI | CCGC | 6 cut(s) | 31, 95, 163, 166, 187, 193 |
| BspANI | GGCC | 2 cut(s) | 229, 451 |
| BspFNI | CGCG | 1 cut(s) | 195 |
| BspLI | GGNNCC | 4 cut(s) | 262, 414, 726, 727 |
| BspMI | ACCTGC | 2 cut(s) | 24, 725 |
| BspQI | GCTCTTC | 1 cut(s) | 669 |
| BspTNI | GGTCTC | 1 cut(s) | 42 |
| BsrDI | GCAATG | 1 cut(s) | 371 |
| BsrI | ACTGG | 3 cut(s) | 394, 465, 480 |
| BssECI | CCNNGG | 2 cut(s) | 728, 729 |
| BssMI | GATC | 2 cut(s) | 70, 154 |
| BssSI | CACGAG | 1 cut(s) | 633 |
| Bst2BI | CACGAG | 1 cut(s) | 633 |
| Bst2UI | CCWGG | 7 cut(s) | 291, 358, 448, 453, 543, 653, 730 |
| Bst6I | CTCTTC | 1 cut(s) | 669 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 517 |
| BstC8I | GCNNGC | 2 cut(s) | 306, 689 |
| BstF5I | GGATG | 2 cut(s) | 513, 673 |
| BstFNI | CGCG | 1 cut(s) | 195 |
| BstHHI | GCGC | 3 cut(s) | 11, 197, 698 |
| BstKTI | GATC | 2 cut(s) | 73, 157 |
| BstMAI | GTCTC | 2 cut(s) | 42, 741 |
| BstMBI | GATC | 2 cut(s) | 70, 154 |
| BstMCI | CGRYCG | 1 cut(s) | 103 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 39, 517, 693 |
| BstNI | CCWGG | 7 cut(s) | 291, 358, 448, 453, 543, 653, 730 |
| BstSCI | CCNGG | 8 cut(s) | 176, 289, 356, 446, 451, 541, 651, 728 |
| BstUI | CGCG | 1 cut(s) | 195 |
| BstV1I | GCAGC | 1 cut(s) | 273 |
| BsuI | GTATCC | 1 cut(s) | 732 |
| BsuRI | GGCC | 2 cut(s) | 229, 451 |
| BtsCI | GGATG | 2 cut(s) | 513, 673 |
| BtsIMutI | CAGTG | 2 cut(s) | 472, 487 |
| BveI | ACCTGC | 2 cut(s) | 24, 725 |
| Cac8I | GCNNGC | 2 cut(s) | 306, 689 |
| CfoI | GCGC | 3 cut(s) | 11, 197, 698 |
| Cfr13I | GGNCC | 4 cut(s) | 227, 260, 559, 725 |
| CseI | GACGC | 1 cut(s) | 372 |
| Csp6I | GTAC | 2 cut(s) | 243, 438 |
| CviAII | CATG | 2 cut(s) | 137, 664 |
| CviQI | GTAC | 2 cut(s) | 243, 438 |
| DpnI | GATC | 2 cut(s) | 72, 156 |
| DpnII | GATC | 2 cut(s) | 70, 154 |
| EaeI | YGGCCR | 1 cut(s) | 449 |
| Eam1104I | CTCTTC | 1 cut(s) | 669 |
| EarI | CTCTTC | 1 cut(s) | 669 |
| EciI | GGCGGA | 3 cut(s) | 84, 152, 176 |
| Eco31I | GGTCTC | 1 cut(s) | 42 |
| Eco47I | GGWCC | 3 cut(s) | 260, 559, 725 |
| EcoO109I | RGGNCCY | 2 cut(s) | 559, 725 |
| EcoRII | CCWGG | 7 cut(s) | 289, 356, 446, 451, 541, 651, 728 |
| EcoT22I | ATGCAT | 1 cut(s) | 513 |
| FaeI | CATG | 2 cut(s) | 140, 667 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 546, 578 |
| FaqI | GGGAC | 1 cut(s) | 738 |
| FatI | CATG | 2 cut(s) | 136, 663 |
| FblI | GTMKAC | 1 cut(s) | 394 |
| Fnu4HI | GCNGC | 2 cut(s) | 166, 287 |
| FokI | GGATG | 2 cut(s) | 520, 680 |
| Fsp4HI | GCNGC | 2 cut(s) | 166, 287 |
| FspBI | CTAG | 1 cut(s) | 309 |
| FspI | TGCGCA | 1 cut(s) | 697 |
| GlaI | GCGC | 3 cut(s) | 10, 196, 697 |
| GluI | GCNGC | 2 cut(s) | 166, 287 |
| GsuI | CTGGAG | 2 cut(s) | 525, 674 |
| HaeIII | GGCC | 2 cut(s) | 229, 451 |
| HapII | CCGG | 3 cut(s) | 103, 178, 230 |
| HgaI | GACGC | 1 cut(s) | 372 |
| HhaI | GCGC | 3 cut(s) | 11, 197, 698 |
| Hin1II | CATG | 2 cut(s) | 140, 667 |
| Hin6I | GCGC | 3 cut(s) | 9, 195, 696 |
| HinP1I | GCGC | 3 cut(s) | 9, 195, 696 |
| HincII | GTYRAC | 1 cut(s) | 610 |
| HindII | GTYRAC | 1 cut(s) | 610 |
| HinfI | GANTC | 3 cut(s) | 83, 140, 705 |
| HpaII | CCGG | 3 cut(s) | 103, 178, 230 |
| HphI | GGTGA | 1 cut(s) | 116 |
| Hpy166II | GTNNAC | 2 cut(s) | 395, 610 |
| Hpy188I | TCNGA | 5 cut(s) | 16, 145, 352, 738, 765 |
| Hpy188III | TCNNGA | 2 cut(s) | 554, 633 |
| Hpy8I | GTNNAC | 2 cut(s) | 395, 610 |
| Hpy99I | CGWCG | 2 cut(s) | 149, 366 |
| HpyCH4V | TGCA | 3 cut(s) | 376, 511, 520 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 39, 517, 693 |
| Hsp92II | CATG | 2 cut(s) | 140, 667 |
| HspAI | GCGC | 3 cut(s) | 9, 195, 696 |
| KflI | GGGWCCC | 1 cut(s) | 725 |
| Kzo9I | GATC | 2 cut(s) | 70, 154 |
| LguI | GCTCTTC | 1 cut(s) | 669 |
| LmnI | GCTCC | 5 cut(s) | 16, 208, 215, 232, 418 |
| Lsp1109I | GCAGC | 1 cut(s) | 273 |
| LweI | GCATC | 5 cut(s) | 20, 190, 498, 520, 638 |
| MaeI | CTAG | 1 cut(s) | 309 |
| MaeIII | GTNAC | 3 cut(s) | 122, 482, 785 |
| MalI | GATC | 2 cut(s) | 72, 156 |
| MboI | GATC | 2 cut(s) | 70, 154 |
| MboII | GAAGA | 1 cut(s) | 686 |
| MlsI | TGGCCA | 1 cut(s) | 451 |
| MluCI | AATT | 4 cut(s) | 222, 498, 599, 774 |
| MluNI | TGGCCA | 1 cut(s) | 451 |
| MlyI | GAGTC | 1 cut(s) | 77 |
| MmeI | TCCRAC | 3 cut(s) | 168, 238, 743 |
| Mox20I | TGGCCA | 1 cut(s) | 451 |
| Mph1103I | ATGCAT | 1 cut(s) | 513 |
| MscI | TGGCCA | 1 cut(s) | 451 |
| Msp20I | TGGCCA | 1 cut(s) | 451 |
| MspI | CCGG | 3 cut(s) | 103, 178, 230 |
| MspR9I | CCNGG | 8 cut(s) | 178, 291, 358, 448, 453, 543, 653, 730 |
| Mva1269I | GAATGC | 1 cut(s) | 345 |
| MvaI | CCWGG | 7 cut(s) | 291, 358, 448, 453, 543, 653, 730 |
| MvnI | CGCG | 1 cut(s) | 195 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 39, 517, 693 |
| NciI | CCSGG | 1 cut(s) | 178 |
| NdeII | GATC | 2 cut(s) | 70, 154 |
| NlaIII | CATG | 2 cut(s) | 140, 667 |
| NlaIV | GGNNCC | 4 cut(s) | 262, 414, 726, 727 |
| NmeAIII | GCCGAG | 2 cut(s) | 54, 80 |
| NmuCI | GTSAC | 3 cut(s) | 122, 482, 785 |
| NsbI | TGCGCA | 1 cut(s) | 697 |
| NsiI | ATGCAT | 1 cut(s) | 513 |
| PasI | CCCWGGG | 1 cut(s) | 729 |
| PciSI | GCTCTTC | 1 cut(s) | 669 |
| PctI | GAATGC | 1 cut(s) | 345 |
| PfeI | GAWTC | 2 cut(s) | 140, 705 |
| PkrI | GCNGC | 2 cut(s) | 167, 288 |
| PleI | GAGTC | 1 cut(s) | 77 |
| PpsI | GAGTC | 1 cut(s) | 77 |
| PpuMI | RGGWCCY | 2 cut(s) | 559, 725 |
| Psp5II | RGGWCCY | 2 cut(s) | 559, 725 |
| Psp6I | CCWGG | 7 cut(s) | 289, 356, 446, 451, 541, 651, 728 |
| PspGI | CCWGG | 7 cut(s) | 289, 356, 446, 451, 541, 651, 728 |
| PspN4I | GGNNCC | 4 cut(s) | 262, 414, 726, 727 |
| PspPI | GGNCC | 4 cut(s) | 227, 260, 559, 725 |
| PspPPI | RGGWCCY | 2 cut(s) | 559, 725 |
| RsaI | GTAC | 2 cut(s) | 244, 439 |
| RsaNI | GTAC | 2 cut(s) | 243, 438 |
| SapI | GCTCTTC | 1 cut(s) | 669 |
| SatI | GCNGC | 2 cut(s) | 166, 287 |
| Sau3AI | GATC | 2 cut(s) | 70, 154 |
| Sau96I | GGNCC | 4 cut(s) | 227, 260, 559, 725 |
| ScaI | AGTACT | 1 cut(s) | 439 |
| SchI | GAGTC | 1 cut(s) | 77 |
| ScrFI | CCNGG | 8 cut(s) | 178, 291, 358, 448, 453, 543, 653, 730 |
| SfaNI | GCATC | 5 cut(s) | 20, 190, 498, 520, 638 |
| SinI | GGWCC | 3 cut(s) | 260, 559, 725 |
| SmlI | CTYRAG | 4 cut(s) | 323, 487, 552, 571 |
| SmoI | CTYRAG | 4 cut(s) | 323, 487, 552, 571 |
| Sse9I | AATT | 4 cut(s) | 222, 498, 599, 774 |
| SsiI | CCGC | 6 cut(s) | 31, 95, 163, 166, 187, 193 |
| SspMI | CTAG | 1 cut(s) | 309 |
| StyD4I | CCNGG | 8 cut(s) | 176, 289, 356, 446, 451, 541, 651, 728 |
| TaqI | TCGA | 1 cut(s) | 81 |
| TaqII | GACCGA | 1 cut(s) | 447 |
| TasI | AATT | 4 cut(s) | 222, 498, 599, 774 |
| TatI | WGTACW | 1 cut(s) | 437 |
| TauI | GCSGC | 1 cut(s) | 168 |
| TfiI | GAWTC | 2 cut(s) | 140, 705 |
| TscAI | CASTG | 2 cut(s) | 472, 487 |
| TseFI | GTSAC | 3 cut(s) | 122, 482, 785 |
| TseI | GCWGC | 1 cut(s) | 286 |
| Tsp45I | GTSAC | 3 cut(s) | 122, 482, 785 |
| TspDTI | ATGAA | 3 cut(s) | 153, 438, 652 |
| TspGWI | ACGGA | 1 cut(s) | 221 |
| TspRI | CASTG | 2 cut(s) | 472, 487 |
| VpaK11BI | GGWCC | 3 cut(s) | 260, 559, 725 |
| XmiI | GTMKAC | 1 cut(s) | 394 |
| XspI | CTAG | 1 cut(s) | 309 |
| ZrmI | AGTACT | 1 cut(s) | 439 |
| Zsp2I | ATGCAT | 1 cut(s) | 513 |