Rmu_sc0001386.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001386.1
OG0000127
Physical Location & Seq
Forward (+)
15854 .. 16578
725 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001386.1_g000005.1.cds

Sequence Viewer

Length: 660 bp
atgcacacacaacaatccgttcctgattctcatgtccagttggacatagatgcagataaggtgaatgccaatgcaactcccaatctttcggtgaggcctcaaggaaagaaggctgccaaagaagctcttcggaaaggaaagaaagcatctaatgattccagtcctctggcagccgctgtggagactatagcaaccaaccaaacatcaatgatgtctgccaaagagaaacgtgatgaggaatatgctcgacatctccgtgaccaacaacaacgagattatatacgcttgcaattggatattcaagagagggaattcaaaaatcaagagagggaagagcgtattatggaaatggacacaaaagctgaagatgcaacccgtggatctaacatctcacaaccaccattccccggtgagtattatccacaatctcctttctccggtggctatccacaacctcctttccccggtggctatccacaaccaccattctccggtgggtattatccacaatctcctttcctcggtggcggtggcttcccacaatcaccattcaccggtggtgtcccttccccacctttctcttccggtgaatccacaaaccccaacaatatggatgaccccacaaacacaaattggattcctaataaagatgaggattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

219

Amino Acids

24.23

Weight (kDa)

5.08

Isoelectric Point (pI)

75.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000127)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02381 FvH4_1g19463 FvH4_1g28433 FvH4_2g16143 FvH4_2g18491 FvH4_2g27711 FvH4_3g19631 FvH4_3g23573 FvH4_4g35743 FvH4_5g23701 FvH4_6g19603 FvH4_6g39781 FvH4_6g40561 FvH4_7g02563 FvH4_7g11472 FvH4_7g17530
rosa_chinensis RchiOBHm_Chr1g0315991 RchiOBHm_Chr1g0318371 RchiOBHm_Chr1g0328341 RchiOBHm_Chr1g0331431 RchiOBHm_Chr1g0344801 RchiOBHm_Chr1g0371461 RchiOBHm_Chr1g0379261 RchiOBHm_Chr2g0117661 RchiOBHm_Chr5g0011791 RchiOBHm_Chr5g0020991 RchiOBHm_Chr5g0060631 RchiOBHm_Chr5g0064181 RchiOBHm_Chr5g0080181 RchiOBHm_Chr6g0254691 RchiOBHm_Chr6g0260101 RchiOBHm_Chr6g0290901 RchiOBHm_Chr7g0201691
rosa_laevigata RLG00000003529 RLG00000009370 RLG00000013568
rosa_multiflora Rmu_co8437743.1_g000001 Rmu_sc0000063.1_g000028 Rmu_sc0000098.1_g000004 Rmu_sc0000166.1_g000028 Rmu_sc0000258.1_g000102 Rmu_sc0000288.1_g000018 Rmu_sc0000333.1_g000043 Rmu_sc0000451.1_g000011 Rmu_sc0000455.1_g000003 Rmu_sc0000479.1_g000002 Rmu_sc0000687.1_g000014 Rmu_sc0000733.1_g000024 Rmu_sc0000736.1_g000001 Rmu_sc0000745.1_g000017 Rmu_sc0000760.1_g000031 Rmu_sc0000776.1_g000044 Rmu_sc0000828.1_g000011 Rmu_sc0000830.1_g000027 Rmu_sc0000857.1_g000025 Rmu_sc0000864.1_g000013 Rmu_sc0001016.1_g000034 Rmu_sc0001016.1_g000035 Rmu_sc0001036.1_g000015 Rmu_sc0001096.1_g000020 Rmu_sc0001145.1_g000023 Rmu_sc0001167.1_g000057 Rmu_sc0001173.1_g000030 Rmu_sc0001260.1_g000006 Rmu_sc0001266.1_g000016 Rmu_sc0001346.1_g000003 Rmu_sc0001346.1_g000004 Rmu_sc0001386.1_g000005 Rmu_sc0001501.1_g000057 Rmu_sc0001565.1_g000058 Rmu_sc0001634.1_g000047 Rmu_sc0001699.1_g000018 Rmu_sc0001700.1_g000041 Rmu_sc0001700.1_g000055 Rmu_sc0001725.1_g000005 Rmu_sc0001823.1_g000005 Rmu_sc0001877.1_g000014 Rmu_sc0001942.1_g000059 Rmu_sc0001966.1_g000033 Rmu_sc0001998.1_g000009 Rmu_sc0002011.1_g000030 Rmu_sc0002147.1_g000007 Rmu_sc0002176.1_g000005 Rmu_sc0002235.1_g000097 Rmu_sc0002324.1_g000002 Rmu_sc0002352.1_g000011 Rmu_sc0002365.1_g000022 Rmu_sc0002548.1_g000007 Rmu_sc0002890.1_g000008 Rmu_sc0002936.1_g000003 Rmu_sc0002955.1_g000016 Rmu_sc0003160.1_g000032 Rmu_sc0003452.1_g000010 Rmu_sc0003490.1_g000023 Rmu_sc0003541.1_g000014 Rmu_sc0003555.1_g000014 Rmu_sc0003759.1_g000008 Rmu_sc0003843.1_g000001 Rmu_sc0003846.1_g000005 Rmu_sc0003890.1_g000019 Rmu_sc0003953.1_g000016 Rmu_sc0003967.1_g000001 Rmu_sc0004068.1_g000002 Rmu_sc0004101.1_g000004 Rmu_sc0004298.1_g000010 Rmu_sc0004507.1_g000008 Rmu_sc0004649.1_g000015 Rmu_sc0004719.1_g000006 Rmu_sc0004751.1_g000012 Rmu_sc0004821.1_g000005 Rmu_sc0004868.1_g000003 Rmu_sc0004876.1_g000023 Rmu_sc0004932.1_g000020 Rmu_sc0005093.1_g000020 Rmu_sc0005132.1_g000019 Rmu_sc0005274.1_g000001 Rmu_sc0005381.1_g000013 Rmu_sc0005693.1_g000009 Rmu_sc0005708.1_g000011 Rmu_sc0005834.1_g000016 Rmu_sc0005966.1_g000017 Rmu_sc0006173.1_g000033 Rmu_sc0006175.1_g000012 Rmu_sc0006590.1_g000004 Rmu_sc0006695.1_g000044 Rmu_sc0007061.1_g000002 Rmu_sc0007069.1_g000023 Rmu_sc0007216.1_g000006 Rmu_sc0008124.1_g000026 Rmu_sc0008148.1_g000028 Rmu_sc0008198.1_g000004 Rmu_sc0008423.1_g000003 Rmu_sc0008441.1_g000011 Rmu_sc0008707.1_g000005 Rmu_sc0009101.1_g000008 Rmu_sc0009240.1_g000039 Rmu_sc0009414.1_g000002 Rmu_sc0009628.1_g000001 Rmu_sc0010048.1_g000007 Rmu_sc0010275.1_g000001 Rmu_sc0010338.1_g000004 Rmu_sc0010659.1_g000005 Rmu_sc0010691.1_g000001 Rmu_sc0011023.1_g000006 Rmu_sc0011533.1_g000001 Rmu_sc0011901.1_g000001 Rmu_sc0012746.1_g000042 Rmu_sc0012773.1_g000005 Rmu_sc0012952.1_g000005 Rmu_sc0014568.1_g000002 Rmu_sc0014568.1_g000003 Rmu_sc0015188.1_g000004 Rmu_sc0019714.1_g000001 Rmu_sc0020148.1_g000003 Rmu_sc0020260.1_g000003 Rmu_sc0021213.1_g000002 Rmu_sc0022616.1_g000001 Rmu_ssc0000084.1_g000006 Rmu_ssc0000116.1_g000017 Rmu_ssc0000116.1_g000018 Rmu_ssc0000189.1_g000037 Rmu_ssc0000330.1_g000009 Rmu_ssc0000359.1_g000004 Rmu_ssc0000366.1_g000031 Rmu_ssc0000386.1_g000056 Rmu_ssc0000387.1_g000006 Rmu_ssc0000400.1_g000065 Rmu_ssc0000440.1_g000006 Rmu_ssc0000452.1_g000014
rosa_roxburghii Rroxscaffold_1G00020180 Rroxscaffold_2G00089580 Rroxscaffold_2G00143500 Rroxscaffold_3G00264360 Rroxscaffold_4G00316450 Rroxscaffold_4G00327050 Rroxscaffold_5G00350260 Rroxscaffold_5G00351750 Rroxscaffold_5G00364680 Rroxscaffold_5G00376220 Rroxscaffold_6G00391720
rosa_rugosa Rorug04G0096700 Rorug05G0284300 Rorug06G0059800 Rorug06G0059900 Rorug06G0060000 Rorug06G0060100 Rorug06G0060200 Rorug06G0127700 Rorug06G0243400
rosa_samantha Rh1AG033000 Rh1AG274600 Rh1DG069700 Rh2DG069900 Rh2DG210700 Rh2DG560100 Rh3AG245500 Rh3BG095400 Rh4AG018100 Rh4AG084900 Rh4AG177900 Rh4CG092300 Rh4CG194700 Rh5BG350600 Rh6BG362400 Rh7DG198200 Rh7DG403500
rosa_wichuraiana Rw1G008260 Rw1G035940 Rw2G027180 Rw4G003470 Rw4G010610 Rw5G037240 Rw6G036490 Rw7G015690 Rw7G028950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 174, 528
AclWI GGATC 1 cut(s) 388
AcsI RAATTY 1 cut(s) 311
AcuI CTGAAG 1 cut(s) 384
AfiI CCNNNNNNNGG 6 cut(s) 407, 437, 464, 491, 521, 554
AgeI ACCGGT 1 cut(s) 554
AgsI TTSAA 2 cut(s) 302, 316
AluBI AGCT 2 cut(s) 125, 362
AluI AGCT 2 cut(s) 125, 362
Alw26I GTCTC 1 cut(s) 176
AlwI GGATC 1 cut(s) 388
AlwNI CAGNNNCTG 1 cut(s) 176
AoxI GGCC 1 cut(s) 95
ApeKI GCWGC 2 cut(s) 113, 170
ApoI RAATTY 1 cut(s) 311
AsiGI ACCGGT 1 cut(s) 554
Asp700I GAANNNNTTC 1 cut(s) 126
AsuC2I CCSGG 2 cut(s) 408, 465
AsuHPI GGTGA 6 cut(s) 73, 103, 422, 537, 544, 599
BbvI GCAGC 2 cut(s) 100, 182
BcnI CCSGG 2 cut(s) 408, 465
BcoDI GTCTC 1 cut(s) 176
BfmI CTRYAG 1 cut(s) 186
BisI GCNGC 3 cut(s) 114, 171, 174
BlsI GCNGC 3 cut(s) 115, 172, 175
Bme1390I CCNGG 2 cut(s) 408, 465
BmrFI CCNGG 2 cut(s) 408, 465
BmsI GCATC 3 cut(s) 40, 155, 358
BpuEI CTTGAG 1 cut(s) 84
BpuMI CCSGG 2 cut(s) 408, 465
BsaJI CCNNGG 4 cut(s) 376, 406, 463, 520
BsaWI WCCGGW 4 cut(s) 437, 491, 554, 584
Bsc4I CCNNNNNNNGG 6 cut(s) 407, 437, 464, 491, 521, 554
Bse118I RCCGGY 1 cut(s) 554
Bse1I ACTGG 2 cut(s) 37, 159
BseDI CCNNGG 4 cut(s) 376, 406, 463, 520
BseGI GGATG 1 cut(s) 619
BseLI CCNNNNNNNGG 6 cut(s) 407, 437, 464, 491, 521, 554
BseNI ACTGG 2 cut(s) 37, 159
BseXI GCAGC 2 cut(s) 100, 182
BshFI GGCC 1 cut(s) 97
BshTI ACCGGT 1 cut(s) 554
BsiSI CCGG 6 cut(s) 408, 438, 465, 492, 555, 585
BslFI GGGAC 1 cut(s) 548
BslI CCNNNNNNNGG 6 cut(s) 407, 437, 464, 491, 521, 554
BsmAI GTCTC 1 cut(s) 176
BsmFI GGGAC 1 cut(s) 548
BsmI GAATGC 1 cut(s) 70
BsnI GGCC 1 cut(s) 97
Bsp143I GATC 1 cut(s) 380
BspACI CCGC 2 cut(s) 174, 528
BspANI GGCC 1 cut(s) 97
BspPI GGATC 1 cut(s) 388
BspQI GCTCTTC 2 cut(s) 132, 327
BsrFI RCCGGY 1 cut(s) 554
BsrI ACTGG 2 cut(s) 37, 159
BssAI RCCGGY 1 cut(s) 554
BssECI CCNNGG 4 cut(s) 376, 406, 463, 520
BssMI GATC 1 cut(s) 380
Bst6I CTCTTC 3 cut(s) 132, 327, 586
BstC8I GCNNGC 1 cut(s) 287
BstDSI CCRYGG 1 cut(s) 376
BstF5I GGATG 1 cut(s) 619
BstKTI GATC 1 cut(s) 383
BstMAI GTCTC 1 cut(s) 176
BstMBI GATC 1 cut(s) 380
BstMWI GCNNNNNNNGC 2 cut(s) 122, 368
BstSCI CCNGG 2 cut(s) 406, 463
BstSFI CTRYAG 1 cut(s) 186
BstV1I GCAGC 2 cut(s) 100, 182
BstX2I RGATCY 1 cut(s) 380
BstXI CCANNNNNNTGG 2 cut(s) 166, 610
BstYI RGATCY 1 cut(s) 380
BsuRI GGCC 1 cut(s) 97
BtgI CCRYGG 1 cut(s) 376
BtsCI GGATG 1 cut(s) 619
Cac8I GCNNGC 1 cut(s) 287
CaiI CAGNNNCTG 1 cut(s) 176
Cfr10I RCCGGY 1 cut(s) 554
CspAI ACCGGT 1 cut(s) 554
CviAII CATG 1 cut(s) 32
CviJI RGCY 8 cut(s) 97, 113, 125, 173, 362, 444, 471, 534
CviKI_1 RGCY 8 cut(s) 97, 113, 125, 173, 362, 444, 471, 534
DpnI GATC 1 cut(s) 382
DpnII GATC 1 cut(s) 380
Eam1104I CTCTTC 3 cut(s) 132, 327, 586
EarI CTCTTC 3 cut(s) 132, 327, 586
Eco147I AGGCCT 1 cut(s) 97
Eco57I CTGAAG 1 cut(s) 384
EcoRI GAATTC 1 cut(s) 311
FaeI CATG 1 cut(s) 35
FaiI YATR 8 cut(s) 33, 47, 188, 243, 279, 281, 344, 611
FalI AAGNNNNNCTT 2 cut(s) 111, 143
FaqI GGGAC 1 cut(s) 548
FatI CATG 1 cut(s) 31
Fnu4HI GCNGC 3 cut(s) 114, 171, 174
FokI GGATG 1 cut(s) 626
Fsp4HI GCNGC 3 cut(s) 114, 171, 174
GluI GCNGC 3 cut(s) 114, 171, 174
HaeIII GGCC 1 cut(s) 97
HapII CCGG 6 cut(s) 408, 438, 465, 492, 555, 585
Hin1II CATG 1 cut(s) 35
HinfI GANTC 4 cut(s) 26, 155, 590, 637
HpaII CCGG 6 cut(s) 408, 438, 465, 492, 555, 585
HphI GGTGA 6 cut(s) 73, 103, 422, 537, 544, 599
Hpy188I TCNGA 1 cut(s) 132
Hpy188III TCNNGA 3 cut(s) 23, 302, 323
HpyAV CCTTC 2 cut(s) 103, 576
HpyCH4IV ACGT 1 cut(s) 229
HpyCH4V TGCA 5 cut(s) 4, 53, 74, 289, 371
HpyF10VI GCNNNNNNNGC 2 cut(s) 122, 368
HpySE526I ACGT 1 cut(s) 229
Hsp92II CATG 1 cut(s) 35
Kzo9I GATC 1 cut(s) 380
LguI GCTCTTC 2 cut(s) 132, 327
Lsp1109I GCAGC 2 cut(s) 100, 182
LweI GCATC 3 cut(s) 40, 155, 358
MaeII ACGT 1 cut(s) 229
MaeIII GTNAC 1 cut(s) 257
MalI GATC 1 cut(s) 382
MboI GATC 1 cut(s) 380
MboII GAAGA 4 cut(s) 119, 344, 377, 573
MfeI CAATTG 1 cut(s) 290
MflI RGATCY 1 cut(s) 380
MluCI AATT 3 cut(s) 290, 311, 631
MmeI TCCRAC 1 cut(s) 21
MnlI CCTC 9 cut(s) 87, 108, 174, 229, 300, 321, 465, 530, 646
MroXI GAANNNNTTC 1 cut(s) 126
MslI CAYNNNNRTG 1 cut(s) 255
MspA1I CMGCKG 1 cut(s) 176
MspI CCGG 6 cut(s) 408, 438, 465, 492, 555, 585
MspR9I CCNGG 2 cut(s) 408, 465
MunI CAATTG 1 cut(s) 290
Mva1269I GAATGC 1 cut(s) 70
MwoI GCNNNNNNNGC 2 cut(s) 122, 368
NciI CCSGG 2 cut(s) 408, 465
NdeII GATC 1 cut(s) 380
NlaIII CATG 1 cut(s) 35
NmuCI GTSAC 1 cut(s) 257
PceI AGGCCT 1 cut(s) 97
PciSI GCTCTTC 2 cut(s) 132, 327
PcsI WCGNNNNNNNCGW 1 cut(s) 253
PctI GAATGC 1 cut(s) 70
PdmI GAANNNNTTC 1 cut(s) 126
PfeI GAWTC 4 cut(s) 26, 155, 590, 637
PinAI ACCGGT 1 cut(s) 554
PkrI GCNGC 3 cut(s) 115, 172, 175
PstNI CAGNNNCTG 1 cut(s) 176
PsuI RGATCY 1 cut(s) 380
RseI CAYNNNNRTG 1 cut(s) 255
SapI GCTCTTC 2 cut(s) 132, 327
SatI GCNGC 3 cut(s) 114, 171, 174
Sau3AI GATC 1 cut(s) 380
ScrFI CCNGG 2 cut(s) 408, 465
SetI ASST 6 cut(s) 63, 127, 232, 364, 457, 577
SfaNI GCATC 3 cut(s) 40, 155, 358
SfcI CTRYAG 1 cut(s) 186
SgrAI CRCCGGYG 1 cut(s) 554
SmiMI CAYNNNNRTG 1 cut(s) 255
SmlI CTYRAG 1 cut(s) 99
SmoI CTYRAG 1 cut(s) 99
Sse9I AATT 3 cut(s) 290, 311, 631
SseBI AGGCCT 1 cut(s) 97
SsiI CCGC 2 cut(s) 174, 528
StuI AGGCCT 1 cut(s) 97
StyD4I CCNGG 2 cut(s) 406, 463
TaiI ACGT 1 cut(s) 232
TaqI TCGA 1 cut(s) 247
TasI AATT 3 cut(s) 290, 311, 631
TauI GCSGC 1 cut(s) 176
TfiI GAWTC 4 cut(s) 26, 155, 590, 637
TseFI GTSAC 1 cut(s) 257
TseI GCWGC 2 cut(s) 113, 170
Tsp45I GTSAC 1 cut(s) 257
TspGWI ACGGA 2 cut(s) 7, 245
XapI RAATTY 1 cut(s) 311
XmnI GAANNNNTTC 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.