Rh4AG084900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000127
Physical Location & Seq
Forward (+)
17766651 .. 17772920
6270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG084900.1

Sequence Viewer

Length: 567 bp
ATGGCAGCTGAAAATGCCAAGAGAGGGATAAAGAGGTTCTTAGAACCATCTACCGGTGACAGAATTGATCAAGAAAAATCTGAATATGGTCATGTCAGATCAAAAAGATTGAAAAGAATGTTTCATCCAGAAATTGCTGGAGGATCTAATGAATGTCAGAATGAAATGCAGTTGAAAGGTGATGATGAAAACGCTACTGAAGGGATGGCAGCTAAGGATGCCAAGAAAGGAAAAAAAAGATTGTCAAAAGAATCCACTACTAAGAGAGAGTTAATCAAGGAAAAACTGAACGTAGTCATGAATAACAACCAAGGATGTCAACAGAGGAAAGAAAAGTGTTTTGCCGAGAGATTGATGAAAAAGATAATCAGTGTCAGATTGAGACCGAATTCAGAGAACCCATTTGTTCTCTTCAGACTTGTGTTTTCCATGATGCAAGGGTCAGTTGTATGCTTCAACAAAAAACAACCAAGAACTCTGGATCAGATTACCACCACCTCCAGCTCCGGCTCCGGCTCTCTCCATGACTGTGACCATCAAAGCCACTTTGGACTCCGTCACGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

21.42

Weight (kDa)

9.65

Isoelectric Point (pI)

41.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000127)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02381 FvH4_1g19463 FvH4_1g28433 FvH4_2g16143 FvH4_2g18491 FvH4_2g27711 FvH4_3g19631 FvH4_3g23573 FvH4_4g35743 FvH4_5g23701 FvH4_6g19603 FvH4_6g39781 FvH4_6g40561 FvH4_7g02563 FvH4_7g11472 FvH4_7g17530
rosa_chinensis RchiOBHm_Chr1g0315991 RchiOBHm_Chr1g0318371 RchiOBHm_Chr1g0328341 RchiOBHm_Chr1g0331431 RchiOBHm_Chr1g0344801 RchiOBHm_Chr1g0371461 RchiOBHm_Chr1g0379261 RchiOBHm_Chr2g0117661 RchiOBHm_Chr5g0011791 RchiOBHm_Chr5g0020991 RchiOBHm_Chr5g0060631 RchiOBHm_Chr5g0064181 RchiOBHm_Chr5g0080181 RchiOBHm_Chr6g0254691 RchiOBHm_Chr6g0260101 RchiOBHm_Chr6g0290901 RchiOBHm_Chr7g0201691
rosa_laevigata RLG00000003529 RLG00000009370 RLG00000013568
rosa_multiflora Rmu_co8437743.1_g000001 Rmu_sc0000063.1_g000028 Rmu_sc0000098.1_g000004 Rmu_sc0000166.1_g000028 Rmu_sc0000258.1_g000102 Rmu_sc0000288.1_g000018 Rmu_sc0000333.1_g000043 Rmu_sc0000451.1_g000011 Rmu_sc0000455.1_g000003 Rmu_sc0000479.1_g000002 Rmu_sc0000687.1_g000014 Rmu_sc0000733.1_g000024 Rmu_sc0000736.1_g000001 Rmu_sc0000745.1_g000017 Rmu_sc0000760.1_g000031 Rmu_sc0000776.1_g000044 Rmu_sc0000828.1_g000011 Rmu_sc0000830.1_g000027 Rmu_sc0000857.1_g000025 Rmu_sc0000864.1_g000013 Rmu_sc0001016.1_g000034 Rmu_sc0001016.1_g000035 Rmu_sc0001036.1_g000015 Rmu_sc0001096.1_g000020 Rmu_sc0001145.1_g000023 Rmu_sc0001167.1_g000057 Rmu_sc0001173.1_g000030 Rmu_sc0001260.1_g000006 Rmu_sc0001266.1_g000016 Rmu_sc0001346.1_g000003 Rmu_sc0001346.1_g000004 Rmu_sc0001386.1_g000005 Rmu_sc0001501.1_g000057 Rmu_sc0001565.1_g000058 Rmu_sc0001634.1_g000047 Rmu_sc0001699.1_g000018 Rmu_sc0001700.1_g000041 Rmu_sc0001700.1_g000055 Rmu_sc0001725.1_g000005 Rmu_sc0001823.1_g000005 Rmu_sc0001877.1_g000014 Rmu_sc0001942.1_g000059 Rmu_sc0001966.1_g000033 Rmu_sc0001998.1_g000009 Rmu_sc0002011.1_g000030 Rmu_sc0002147.1_g000007 Rmu_sc0002176.1_g000005 Rmu_sc0002235.1_g000097 Rmu_sc0002324.1_g000002 Rmu_sc0002352.1_g000011 Rmu_sc0002365.1_g000022 Rmu_sc0002548.1_g000007 Rmu_sc0002890.1_g000008 Rmu_sc0002936.1_g000003 Rmu_sc0002955.1_g000016 Rmu_sc0003160.1_g000032 Rmu_sc0003452.1_g000010 Rmu_sc0003490.1_g000023 Rmu_sc0003541.1_g000014 Rmu_sc0003555.1_g000014 Rmu_sc0003759.1_g000008 Rmu_sc0003843.1_g000001 Rmu_sc0003846.1_g000005 Rmu_sc0003890.1_g000019 Rmu_sc0003953.1_g000016 Rmu_sc0003967.1_g000001 Rmu_sc0004068.1_g000002 Rmu_sc0004101.1_g000004 Rmu_sc0004298.1_g000010 Rmu_sc0004507.1_g000008 Rmu_sc0004649.1_g000015 Rmu_sc0004719.1_g000006 Rmu_sc0004751.1_g000012 Rmu_sc0004821.1_g000005 Rmu_sc0004868.1_g000003 Rmu_sc0004876.1_g000023 Rmu_sc0004932.1_g000020 Rmu_sc0005093.1_g000020 Rmu_sc0005132.1_g000019 Rmu_sc0005274.1_g000001 Rmu_sc0005381.1_g000013 Rmu_sc0005693.1_g000009 Rmu_sc0005708.1_g000011 Rmu_sc0005834.1_g000016 Rmu_sc0005966.1_g000017 Rmu_sc0006173.1_g000033 Rmu_sc0006175.1_g000012 Rmu_sc0006590.1_g000004 Rmu_sc0006695.1_g000044 Rmu_sc0007061.1_g000002 Rmu_sc0007069.1_g000023 Rmu_sc0007216.1_g000006 Rmu_sc0008124.1_g000026 Rmu_sc0008148.1_g000028 Rmu_sc0008198.1_g000004 Rmu_sc0008423.1_g000003 Rmu_sc0008441.1_g000011 Rmu_sc0008707.1_g000005 Rmu_sc0009101.1_g000008 Rmu_sc0009240.1_g000039 Rmu_sc0009414.1_g000002 Rmu_sc0009628.1_g000001 Rmu_sc0010048.1_g000007 Rmu_sc0010275.1_g000001 Rmu_sc0010338.1_g000004 Rmu_sc0010659.1_g000005 Rmu_sc0010691.1_g000001 Rmu_sc0011023.1_g000006 Rmu_sc0011533.1_g000001 Rmu_sc0011901.1_g000001 Rmu_sc0012746.1_g000042 Rmu_sc0012773.1_g000005 Rmu_sc0012952.1_g000005 Rmu_sc0014568.1_g000002 Rmu_sc0014568.1_g000003 Rmu_sc0015188.1_g000004 Rmu_sc0019714.1_g000001 Rmu_sc0020148.1_g000003 Rmu_sc0020260.1_g000003 Rmu_sc0021213.1_g000002 Rmu_sc0022616.1_g000001 Rmu_ssc0000084.1_g000006 Rmu_ssc0000116.1_g000017 Rmu_ssc0000116.1_g000018 Rmu_ssc0000189.1_g000037 Rmu_ssc0000330.1_g000009 Rmu_ssc0000359.1_g000004 Rmu_ssc0000366.1_g000031 Rmu_ssc0000386.1_g000056 Rmu_ssc0000387.1_g000006 Rmu_ssc0000400.1_g000065 Rmu_ssc0000440.1_g000006 Rmu_ssc0000452.1_g000014
rosa_roxburghii Rroxscaffold_1G00020180 Rroxscaffold_2G00089580 Rroxscaffold_2G00143500 Rroxscaffold_3G00264360 Rroxscaffold_4G00316450 Rroxscaffold_4G00327050 Rroxscaffold_5G00350260 Rroxscaffold_5G00351750 Rroxscaffold_5G00364680 Rroxscaffold_5G00376220 Rroxscaffold_6G00391720
rosa_rugosa Rorug04G0096700 Rorug05G0284300 Rorug06G0059800 Rorug06G0059900 Rorug06G0060000 Rorug06G0060100 Rorug06G0060200 Rorug06G0127700 Rorug06G0243400
rosa_samantha Rh1AG033000 Rh1AG274600 Rh1DG069700 Rh2DG069900 Rh2DG210700 Rh2DG560100 Rh3AG245500 Rh3BG095400 Rh4AG018100 Rh4AG084900 Rh4AG177900 Rh4CG092300 Rh4CG194700 Rh5BG350600 Rh6BG362400 Rh7DG198200 Rh7DG403500
rosa_wichuraiana Rw1G008260 Rw1G035940 Rw2G027180 Rw4G003470 Rw4G010610 Rw5G037240 Rw6G036490 Rw7G015690 Rw7G028950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 151, 489
AcsI RAATTY 1 cut(s) 388
AcuI CTGAAG 2 cut(s) 219, 397
AfiI CCNNNNNNNGG 2 cut(s) 24, 53
AgeI ACCGGT 1 cut(s) 53
AgsI TTSAA 3 cut(s) 112, 175, 457
AluBI AGCT 3 cut(s) 8, 212, 504
AluI AGCT 3 cut(s) 8, 212, 504
Alw26I GTCTC 1 cut(s) 376
AlwI GGATC 2 cut(s) 151, 489
ApeKI GCWGC 2 cut(s) 5, 209
ApoI RAATTY 1 cut(s) 388
AsiGI ACCGGT 1 cut(s) 53
AsuHPI GGTGA 2 cut(s) 68, 191
BbvI GCAGC 2 cut(s) 17, 221
BccI CCATC 3 cut(s) 55, 199, 543
BclI TGATCA 1 cut(s) 67
BcoDI GTCTC 1 cut(s) 376
BisI GCNGC 2 cut(s) 6, 210
BlsI GCNGC 2 cut(s) 7, 211
BmiI GGNNCC 1 cut(s) 511
BmsI GCATC 2 cut(s) 208, 423
BpmI CTGGAG 2 cut(s) 159, 484
Bpu10I CCTNAGC 1 cut(s) 213
BsaI GGTCTC 1 cut(s) 376
BsaJI CCNNGG 1 cut(s) 310
BsaWI WCCGGW 1 cut(s) 53
Bsc4I CCNNNNNNNGG 2 cut(s) 24, 53
Bse118I RCCGGY 1 cut(s) 53
BseDI CCNNGG 1 cut(s) 310
BseGI GGATG 4 cut(s) 124, 210, 223, 320
BseLI CCNNNNNNNGG 2 cut(s) 24, 53
BseXI GCAGC 2 cut(s) 17, 221
BshTI ACCGGT 1 cut(s) 53
BsiSI CCGG 3 cut(s) 54, 507, 513
BslI CCNNNNNNNGG 2 cut(s) 24, 53
BsmAI GTCTC 1 cut(s) 376
Bso31I GGTCTC 1 cut(s) 376
Bsp143I GATC 4 cut(s) 67, 98, 143, 481
BspHI TCATGA 1 cut(s) 297
BspLI GGNNCC 1 cut(s) 511
BspPI GGATC 2 cut(s) 151, 489
BspTNI GGTCTC 1 cut(s) 376
BsrFI RCCGGY 1 cut(s) 53
BssAI RCCGGY 1 cut(s) 53
BssECI CCNNGG 1 cut(s) 310
BssMI GATC 4 cut(s) 67, 98, 143, 481
BssT1I CCWWGG 1 cut(s) 310
Bst4CI ACNGT 1 cut(s) 530
Bst6I CTCTTC 1 cut(s) 416
BstDEI CTNAG 3 cut(s) 40, 213, 261
BstF5I GGATG 4 cut(s) 124, 210, 223, 320
BstKTI GATC 4 cut(s) 70, 101, 146, 484
BstMAI GTCTC 1 cut(s) 376
BstMBI GATC 4 cut(s) 67, 98, 143, 481
BstMWI GCNNNNNNNGC 2 cut(s) 14, 218
BstV1I GCAGC 2 cut(s) 17, 221
BstX2I RGATCY 1 cut(s) 143
BstYI RGATCY 1 cut(s) 143
BtsCI GGATG 4 cut(s) 124, 210, 223, 320
BtsIMutI CAGTG 1 cut(s) 376
CciI TCATGA 1 cut(s) 297
Cfr10I RCCGGY 1 cut(s) 53
CspAI ACCGGT 1 cut(s) 53
CviAII CATG 4 cut(s) 92, 298, 430, 524
CviJI RGCY 6 cut(s) 8, 212, 504, 510, 516, 543
CviKI_1 RGCY 6 cut(s) 8, 212, 504, 510, 516, 543
DdeI CTNAG 3 cut(s) 40, 213, 261
DpnI GATC 4 cut(s) 69, 100, 145, 483
DpnII GATC 4 cut(s) 67, 98, 143, 481
Eam1104I CTCTTC 1 cut(s) 416
EarI CTCTTC 1 cut(s) 416
Eco130I CCWWGG 1 cut(s) 310
Eco31I GGTCTC 1 cut(s) 376
Eco57I CTGAAG 2 cut(s) 219, 397
EcoRI GAATTC 1 cut(s) 388
EcoT14I CCWWGG 1 cut(s) 310
ErhI CCWWGG 1 cut(s) 310
FaeI CATG 4 cut(s) 95, 301, 433, 527
FaiI YATR 6 cut(s) 87, 93, 299, 431, 451, 525
FalI AAGNNNNNCTT 2 cut(s) 23, 55
FatI CATG 4 cut(s) 91, 297, 429, 523
FbaI TGATCA 1 cut(s) 67
Fnu4HI GCNGC 2 cut(s) 6, 210
FokI GGATG 4 cut(s) 111, 217, 230, 327
Fsp4HI GCNGC 2 cut(s) 6, 210
GluI GCNGC 2 cut(s) 6, 210
GsuI CTGGAG 2 cut(s) 159, 484
HapII CCGG 3 cut(s) 54, 507, 513
Hin1II CATG 4 cut(s) 95, 301, 433, 527
HincII GTYRAC 1 cut(s) 320
HindII GTYRAC 1 cut(s) 320
HinfI GANTC 2 cut(s) 251, 552
HpaII CCGG 3 cut(s) 54, 507, 513
HphI GGTGA 2 cut(s) 68, 191
Hpy166II GTNNAC 1 cut(s) 320
Hpy188I TCNGA 7 cut(s) 82, 98, 159, 377, 394, 416, 486
Hpy188III TCNNGA 5 cut(s) 71, 128, 298, 479, 560
Hpy8I GTNNAC 1 cut(s) 320
HpyAV CCTTC 1 cut(s) 194
HpyCH4III ACNGT 1 cut(s) 530
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 2 cut(s) 169, 436
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 218
HpyF3I CTNAG 3 cut(s) 40, 213, 261
HpySE526I ACGT 1 cut(s) 291
Hsp92II CATG 4 cut(s) 95, 301, 433, 527
Ksp22I TGATCA 1 cut(s) 67
Kzo9I GATC 4 cut(s) 67, 98, 143, 481
LmnI GCTCC 2 cut(s) 509, 515
LpnPI CCDG 7 cut(s) 67, 123, 141, 464, 514, 520, 526
Lsp1109I GCAGC 2 cut(s) 17, 221
LweI GCATC 2 cut(s) 208, 423
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 3 cut(s) 56, 530, 557
MalI GATC 4 cut(s) 69, 100, 145, 483
MboI GATC 4 cut(s) 67, 98, 143, 481
MboII GAAGA 1 cut(s) 403
MflI RGATCY 1 cut(s) 143
MluCI AATT 3 cut(s) 63, 132, 388
MlyI GAGTC 1 cut(s) 546
MnlI CCTC 5 cut(s) 17, 27, 134, 318, 508
MseI TTAA 2 cut(s) 272, 565
MslI CAYNNNNRTG 1 cut(s) 528
MspA1I CMGCKG 1 cut(s) 8
MspI CCGG 3 cut(s) 54, 507, 513
MwoI GCNNNNNNNGC 2 cut(s) 14, 218
NdeII GATC 4 cut(s) 67, 98, 143, 481
NlaIII CATG 4 cut(s) 95, 301, 433, 527
NlaIV GGNNCC 1 cut(s) 511
NmeAIII GCCGAG 1 cut(s) 370
NmuCI GTSAC 3 cut(s) 56, 530, 557
PagI TCATGA 1 cut(s) 297
PfeI GAWTC 1 cut(s) 251
PflFI GACNNNGTC 1 cut(s) 555
PinAI ACCGGT 1 cut(s) 53
PkrI GCNGC 2 cut(s) 7, 211
PleI GAGTC 1 cut(s) 546
PpsI GAGTC 1 cut(s) 546
PspN4I GGNNCC 1 cut(s) 511
PsuI RGATCY 1 cut(s) 143
PsyI GACNNNGTC 1 cut(s) 555
PvuII CAGCTG 1 cut(s) 8
RseI CAYNNNNRTG 1 cut(s) 528
SaqAI TTAA 2 cut(s) 272, 565
SatI GCNGC 2 cut(s) 6, 210
Sau3AI GATC 4 cut(s) 67, 98, 143, 481
SchI GAGTC 1 cut(s) 546
SetI ASST 7 cut(s) 10, 38, 181, 214, 294, 500, 506
SfaNI GCATC 2 cut(s) 208, 423
SmiMI CAYNNNNRTG 1 cut(s) 528
Sse9I AATT 3 cut(s) 63, 132, 388
StyI CCWWGG 1 cut(s) 310
TaaI ACNGT 1 cut(s) 530
TaiI ACGT 1 cut(s) 294
TaqII GACCGA 1 cut(s) 400
TasI AATT 3 cut(s) 63, 132, 388
TfiI GAWTC 1 cut(s) 251
Tru1I TTAA 2 cut(s) 272, 565
Tru9I TTAA 2 cut(s) 272, 565
TscAI CASTG 1 cut(s) 376
TseFI GTSAC 3 cut(s) 56, 530, 557
TseI GCWGC 2 cut(s) 5, 209
Tsp45I GTSAC 3 cut(s) 56, 530, 557
TspDTI ATGAA 6 cut(s) 113, 165, 177, 201, 314, 371
TspGWI ACGGA 1 cut(s) 545
TspRI CASTG 1 cut(s) 376
Tth111I GACNNNGTC 1 cut(s) 555
XapI RAATTY 1 cut(s) 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.