RchiOBHm_Chr6g0254691

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000127
Physical Location & Seq
Reverse (-)
9636135 .. 9638172
2038 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22845

Sequence Viewer

Length: 756 bp
ATGGCCGAACAAAGGAGAAACACACGTCCAGTGGCCGAACAAGAGAGAGATCAAAATGAAGATGAGGTTACCCAAGACAAAAGGAGATGGACGGATGAGGAAGATGTTCAATTGTGCAAGTCTTGGAAAGTTGTAGGCCAATGTCCGGCTGTGGGCACAAATCAGAAAAAAAACGACTTATGGTTGCGCGTGAAGCGACACTTTGACGCAAATTGGCCCAAGAGCCGATCAGCCCAATCTTTGCAGGGAAGGTGGAAAATTTTGAAGATAGAACTCTTTGAGTGGCATTGTGCATTAAGGCAAGCGAAACATTGGTACAAAAGCGGTTCGAATGCGGTTGATGAGCAAGATGAAGCACATAAATTGTGGCATGCCGGGATGAAGAGAAAAACTGGGAAGGACAAAAGACACAATTTTCAGAGCTTTGATAGTTACGTTGCTGTGGAGGGCTTTGCACAATTTAAAGACATCCCTAGCCATACATCCGGAGGAACATCAAATGAAGCAAATCAACATATGCGCACACAACCAATTGCTGAAAATTCCCCCATCAACTTAGATATGGATGTAGATGAGGTAATTGCAGGTGAAACTGCAGATCCTAATGTGAGGCCTCAAGGAAGGAAGGCTGCGAAAGAAGCAATACGGAAAGGAAAGAAGGCAGCTAAAGATCAAAGTCCTTTGTCAAGCAGTCTCGAGAGTATAGCGAACAACCAAATAGAGGCAACCAAGGGCAAGAAAAAACTCGATGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

251

Amino Acids

28.71

Weight (kDa)

9.11

Isoelectric Point (pI)

54.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000127)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02381 FvH4_1g19463 FvH4_1g28433 FvH4_2g16143 FvH4_2g18491 FvH4_2g27711 FvH4_3g19631 FvH4_3g23573 FvH4_4g35743 FvH4_5g23701 FvH4_6g19603 FvH4_6g39781 FvH4_6g40561 FvH4_7g02563 FvH4_7g11472 FvH4_7g17530
rosa_chinensis RchiOBHm_Chr1g0315991 RchiOBHm_Chr1g0318371 RchiOBHm_Chr1g0328341 RchiOBHm_Chr1g0331431 RchiOBHm_Chr1g0344801 RchiOBHm_Chr1g0371461 RchiOBHm_Chr1g0379261 RchiOBHm_Chr2g0117661 RchiOBHm_Chr5g0011791 RchiOBHm_Chr5g0020991 RchiOBHm_Chr5g0060631 RchiOBHm_Chr5g0064181 RchiOBHm_Chr5g0080181 RchiOBHm_Chr6g0254691 RchiOBHm_Chr6g0260101 RchiOBHm_Chr6g0290901 RchiOBHm_Chr7g0201691
rosa_laevigata RLG00000003529 RLG00000009370 RLG00000013568
rosa_multiflora Rmu_co8437743.1_g000001 Rmu_sc0000063.1_g000028 Rmu_sc0000098.1_g000004 Rmu_sc0000166.1_g000028 Rmu_sc0000258.1_g000102 Rmu_sc0000288.1_g000018 Rmu_sc0000333.1_g000043 Rmu_sc0000451.1_g000011 Rmu_sc0000455.1_g000003 Rmu_sc0000479.1_g000002 Rmu_sc0000687.1_g000014 Rmu_sc0000733.1_g000024 Rmu_sc0000736.1_g000001 Rmu_sc0000745.1_g000017 Rmu_sc0000760.1_g000031 Rmu_sc0000776.1_g000044 Rmu_sc0000828.1_g000011 Rmu_sc0000830.1_g000027 Rmu_sc0000857.1_g000025 Rmu_sc0000864.1_g000013 Rmu_sc0001016.1_g000034 Rmu_sc0001016.1_g000035 Rmu_sc0001036.1_g000015 Rmu_sc0001096.1_g000020 Rmu_sc0001145.1_g000023 Rmu_sc0001167.1_g000057 Rmu_sc0001173.1_g000030 Rmu_sc0001260.1_g000006 Rmu_sc0001266.1_g000016 Rmu_sc0001346.1_g000003 Rmu_sc0001346.1_g000004 Rmu_sc0001386.1_g000005 Rmu_sc0001501.1_g000057 Rmu_sc0001565.1_g000058 Rmu_sc0001634.1_g000047 Rmu_sc0001699.1_g000018 Rmu_sc0001700.1_g000041 Rmu_sc0001700.1_g000055 Rmu_sc0001725.1_g000005 Rmu_sc0001823.1_g000005 Rmu_sc0001877.1_g000014 Rmu_sc0001942.1_g000059 Rmu_sc0001966.1_g000033 Rmu_sc0001998.1_g000009 Rmu_sc0002011.1_g000030 Rmu_sc0002147.1_g000007 Rmu_sc0002176.1_g000005 Rmu_sc0002235.1_g000097 Rmu_sc0002324.1_g000002 Rmu_sc0002352.1_g000011 Rmu_sc0002365.1_g000022 Rmu_sc0002548.1_g000007 Rmu_sc0002890.1_g000008 Rmu_sc0002936.1_g000003 Rmu_sc0002955.1_g000016 Rmu_sc0003160.1_g000032 Rmu_sc0003452.1_g000010 Rmu_sc0003490.1_g000023 Rmu_sc0003541.1_g000014 Rmu_sc0003555.1_g000014 Rmu_sc0003759.1_g000008 Rmu_sc0003843.1_g000001 Rmu_sc0003846.1_g000005 Rmu_sc0003890.1_g000019 Rmu_sc0003953.1_g000016 Rmu_sc0003967.1_g000001 Rmu_sc0004068.1_g000002 Rmu_sc0004101.1_g000004 Rmu_sc0004298.1_g000010 Rmu_sc0004507.1_g000008 Rmu_sc0004649.1_g000015 Rmu_sc0004719.1_g000006 Rmu_sc0004751.1_g000012 Rmu_sc0004821.1_g000005 Rmu_sc0004868.1_g000003 Rmu_sc0004876.1_g000023 Rmu_sc0004932.1_g000020 Rmu_sc0005093.1_g000020 Rmu_sc0005132.1_g000019 Rmu_sc0005274.1_g000001 Rmu_sc0005381.1_g000013 Rmu_sc0005693.1_g000009 Rmu_sc0005708.1_g000011 Rmu_sc0005834.1_g000016 Rmu_sc0005966.1_g000017 Rmu_sc0006173.1_g000033 Rmu_sc0006175.1_g000012 Rmu_sc0006590.1_g000004 Rmu_sc0006695.1_g000044 Rmu_sc0007061.1_g000002 Rmu_sc0007069.1_g000023 Rmu_sc0007216.1_g000006 Rmu_sc0008124.1_g000026 Rmu_sc0008148.1_g000028 Rmu_sc0008198.1_g000004 Rmu_sc0008423.1_g000003 Rmu_sc0008441.1_g000011 Rmu_sc0008707.1_g000005 Rmu_sc0009101.1_g000008 Rmu_sc0009240.1_g000039 Rmu_sc0009414.1_g000002 Rmu_sc0009628.1_g000001 Rmu_sc0010048.1_g000007 Rmu_sc0010275.1_g000001 Rmu_sc0010338.1_g000004 Rmu_sc0010659.1_g000005 Rmu_sc0010691.1_g000001 Rmu_sc0011023.1_g000006 Rmu_sc0011533.1_g000001 Rmu_sc0011901.1_g000001 Rmu_sc0012746.1_g000042 Rmu_sc0012773.1_g000005 Rmu_sc0012952.1_g000005 Rmu_sc0014568.1_g000002 Rmu_sc0014568.1_g000003 Rmu_sc0015188.1_g000004 Rmu_sc0019714.1_g000001 Rmu_sc0020148.1_g000003 Rmu_sc0020260.1_g000003 Rmu_sc0021213.1_g000002 Rmu_sc0022616.1_g000001 Rmu_ssc0000084.1_g000006 Rmu_ssc0000116.1_g000017 Rmu_ssc0000116.1_g000018 Rmu_ssc0000189.1_g000037 Rmu_ssc0000330.1_g000009 Rmu_ssc0000359.1_g000004 Rmu_ssc0000366.1_g000031 Rmu_ssc0000386.1_g000056 Rmu_ssc0000387.1_g000006 Rmu_ssc0000400.1_g000065 Rmu_ssc0000440.1_g000006 Rmu_ssc0000452.1_g000014
rosa_roxburghii Rroxscaffold_1G00020180 Rroxscaffold_2G00089580 Rroxscaffold_2G00143500 Rroxscaffold_3G00264360 Rroxscaffold_4G00316450 Rroxscaffold_4G00327050 Rroxscaffold_5G00350260 Rroxscaffold_5G00351750 Rroxscaffold_5G00364680 Rroxscaffold_5G00376220 Rroxscaffold_6G00391720
rosa_rugosa Rorug04G0096700 Rorug05G0284300 Rorug06G0059800 Rorug06G0059900 Rorug06G0060000 Rorug06G0060100 Rorug06G0060200 Rorug06G0127700 Rorug06G0243400
rosa_samantha Rh1AG033000 Rh1AG274600 Rh1DG069700 Rh2DG069900 Rh2DG210700 Rh2DG560100 Rh3AG245500 Rh3BG095400 Rh4AG018100 Rh4AG084900 Rh4AG177900 Rh4CG092300 Rh4CG194700 Rh5BG350600 Rh6BG362400 Rh7DG198200 Rh7DG403500
rosa_wichuraiana Rw1G008260 Rw1G035940 Rw2G027180 Rw4G003470 Rw4G010610 Rw5G037240 Rw6G036490 Rw7G015690 Rw7G028950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 575
Acc16I TGCGCA 1 cut(s) 521
Acc36I ACCTGC 1 cut(s) 575
AccII CGCG 1 cut(s) 189
AccIII TCCGGA 1 cut(s) 485
AciI CCGC 2 cut(s) 324, 335
AclWI GGATC 1 cut(s) 593
AcoI YGGCCR 2 cut(s) 3, 33
AcsI RAATTY 2 cut(s) 258, 541
AfaI GTAC 1 cut(s) 317
AfiI CCNNNNNNNGG 4 cut(s) 12, 145, 152, 721
AflIII ACRYGT 1 cut(s) 23
AgsI TTSAA 2 cut(s) 110, 265
AjiI CACGTC 1 cut(s) 26
AluBI AGCT 2 cut(s) 423, 665
AluI AGCT 2 cut(s) 423, 665
Alw26I GTCTC 1 cut(s) 698
AlwI GGATC 1 cut(s) 593
Ama87I CYCGRG 1 cut(s) 695
Aor13HI TCCGGA 1 cut(s) 485
AoxI GGCC 5 cut(s) 3, 33, 136, 215, 611
ApeKI GCWGC 2 cut(s) 629, 662
ApoI RAATTY 2 cut(s) 258, 541
Asp700I GAANNNNTTC 1 cut(s) 105
AspLEI GCGC 2 cut(s) 189, 522
AspS9I GGNCC 1 cut(s) 216
AsuC2I CCSGG 1 cut(s) 376
AsuHPI GGTGA 1 cut(s) 599
AsuII TTCGAA 1 cut(s) 329
AvaI CYCGRG 1 cut(s) 695
BaeGI GKGCMC 1 cut(s) 158
BbvI GCAGC 2 cut(s) 616, 674
BccI CCATC 2 cut(s) 81, 557
BcnI CCSGG 1 cut(s) 376
BcoDI GTCTC 1 cut(s) 698
BfaI CTAG 1 cut(s) 474
BfmI CTRYAG 1 cut(s) 594
BfuAI ACCTGC 1 cut(s) 575
BisI GCNGC 2 cut(s) 630, 663
BlsI GCNGC 2 cut(s) 631, 664
Bme1390I CCNGG 1 cut(s) 376
BmeT110I CYCGRG 1 cut(s) 695
BmgBI CACGTC 1 cut(s) 26
BmgT120I GGNCC 1 cut(s) 216
BmrFI CCNGG 1 cut(s) 376
BmrI ACTGGG 1 cut(s) 402
BmuI ACTGGG 1 cut(s) 402
Bpu14I TTCGAA 1 cut(s) 329
BpuEI CTTGAG 1 cut(s) 600
BpuMI CCSGG 1 cut(s) 376
BsaJI CCNNGG 1 cut(s) 729
BsaWI WCCGGW 1 cut(s) 485
Bsc4I CCNNNNNNNGG 4 cut(s) 12, 145, 152, 721
Bse1I ACTGG 2 cut(s) 29, 397
BseAI TCCGGA 1 cut(s) 485
BseDI CCNNGG 1 cut(s) 729
BseGI GGATG 5 cut(s) 100, 384, 468, 482, 571
BseLI CCNNNNNNNGG 4 cut(s) 12, 145, 152, 721
BseNI ACTGG 2 cut(s) 29, 397
BseSI GKGCMC 1 cut(s) 158
BseXI GCAGC 2 cut(s) 616, 674
Bsh1236I CGCG 1 cut(s) 189
BshFI GGCC 5 cut(s) 5, 35, 138, 217, 613
BsiHKCI CYCGRG 1 cut(s) 695
BsiSI CCGG 3 cut(s) 146, 375, 486
BslI CCNNNNNNNGG 4 cut(s) 12, 145, 152, 721
BsmAI GTCTC 1 cut(s) 698
BsmI GAATGC 1 cut(s) 337
BsnI GGCC 5 cut(s) 5, 35, 138, 217, 613
BsoBI CYCGRG 1 cut(s) 695
Bsp119I TTCGAA 1 cut(s) 329
Bsp1286I GDGCHC 1 cut(s) 158
Bsp13I TCCGGA 1 cut(s) 485
Bsp143I GATC 4 cut(s) 49, 227, 598, 670
BspACI CCGC 2 cut(s) 324, 335
BspANI GGCC 5 cut(s) 5, 35, 138, 217, 613
BspEI TCCGGA 1 cut(s) 485
BspFNI CGCG 1 cut(s) 189
BspMAI CTGCAG 1 cut(s) 598
BspMI ACCTGC 1 cut(s) 575
BspPI GGATC 1 cut(s) 593
BspT104I TTCGAA 1 cut(s) 329
BsrI ACTGG 2 cut(s) 29, 397
BssECI CCNNGG 1 cut(s) 729
BssMI GATC 4 cut(s) 49, 227, 598, 670
BssT1I CCWWGG 1 cut(s) 729
Bst6I CTCTTC 1 cut(s) 377
BstBI TTCGAA 1 cut(s) 329
BstC8I GCNNGC 2 cut(s) 303, 372
BstDEI CTNAG 1 cut(s) 556
BstEII GGTNACC 1 cut(s) 67
BstF5I GGATG 5 cut(s) 100, 384, 468, 482, 571
BstFNI CGCG 1 cut(s) 189
BstHHI GCGC 2 cut(s) 189, 522
BstKTI GATC 4 cut(s) 52, 230, 601, 673
BstMAI GTCTC 1 cut(s) 698
BstMBI GATC 4 cut(s) 49, 227, 598, 670
BstMWI GCNNNNNNNGC 2 cut(s) 193, 638
BstNSI RCATGY 1 cut(s) 374
BstPI GGTNACC 1 cut(s) 67
BstSCI CCNGG 1 cut(s) 374
BstSFI CTRYAG 1 cut(s) 594
BstSLI GKGCMC 1 cut(s) 158
BstUI CGCG 1 cut(s) 189
BstV1I GCAGC 2 cut(s) 616, 674
BstX2I RGATCY 1 cut(s) 598
BstYI RGATCY 1 cut(s) 598
BsuRI GGCC 5 cut(s) 5, 35, 138, 217, 613
BtrI CACGTC 1 cut(s) 26
BtsCI GGATG 5 cut(s) 100, 384, 468, 482, 571
BtsIMutI CAGTG 1 cut(s) 36
BveI ACCTGC 1 cut(s) 575
Cac8I GCNNGC 2 cut(s) 303, 372
CfoI GCGC 2 cut(s) 189, 522
Cfr13I GGNCC 1 cut(s) 216
CseI GACGC 1 cut(s) 215
Csp6I GTAC 1 cut(s) 316
CviAII CATG 1 cut(s) 371
CviQI GTAC 1 cut(s) 316
DdeI CTNAG 1 cut(s) 556
DpnI GATC 4 cut(s) 51, 229, 600, 672
DpnII GATC 4 cut(s) 49, 227, 598, 670
DraI TTTAAA 1 cut(s) 463
EaeI YGGCCR 2 cut(s) 3, 33
Eam1104I CTCTTC 1 cut(s) 377
EarI CTCTTC 1 cut(s) 377
Eco130I CCWWGG 1 cut(s) 729
Eco147I AGGCCT 1 cut(s) 613
Eco88I CYCGRG 1 cut(s) 695
Eco91I GGTNACC 1 cut(s) 67
EcoO65I GGTNACC 1 cut(s) 67
EcoT14I CCWWGG 1 cut(s) 729
ErhI CCWWGG 1 cut(s) 729
FaeI CATG 1 cut(s) 374
FaiI YATR 8 cut(s) 181, 360, 372, 480, 516, 518, 563, 704
FalI AAGNNNNNCTT 2 cut(s) 185, 217
FatI CATG 1 cut(s) 370
FauNDI CATATG 1 cut(s) 516
Fnu4HI GCNGC 2 cut(s) 630, 663
FokI GGATG 5 cut(s) 107, 391, 455, 469, 578
Fsp4HI GCNGC 2 cut(s) 630, 663
FspAI RTGCGCAY 1 cut(s) 521
FspBI CTAG 1 cut(s) 474
FspI TGCGCA 1 cut(s) 521
GlaI GCGC 2 cut(s) 188, 521
GluI GCNGC 2 cut(s) 630, 663
HaeIII GGCC 5 cut(s) 5, 35, 138, 217, 613
HapII CCGG 3 cut(s) 146, 375, 486
HgaI GACGC 1 cut(s) 215
HhaI GCGC 2 cut(s) 189, 522
Hin1II CATG 1 cut(s) 374
Hin6I GCGC 2 cut(s) 187, 520
HinP1I GCGC 2 cut(s) 187, 520
HpaII CCGG 3 cut(s) 146, 375, 486
HphI GGTGA 1 cut(s) 599
Hpy188I TCNGA 2 cut(s) 165, 420
Hpy188III TCNNGA 3 cut(s) 486, 695, 697
HpyAV CCTTC 5 cut(s) 243, 391, 615, 619, 652
HpyCH4IV ACGT 2 cut(s) 25, 435
HpyCH4V TGCA 6 cut(s) 117, 244, 293, 455, 584, 596
HpyF10VI GCNNNNNNNGC 2 cut(s) 193, 638
HpyF3I CTNAG 1 cut(s) 556
HpySE526I ACGT 2 cut(s) 25, 435
Hsp92II CATG 1 cut(s) 374
HspAI GCGC 2 cut(s) 187, 520
Kpn2I TCCGGA 1 cut(s) 485
Kzo9I GATC 4 cut(s) 49, 227, 598, 670
LpnPI CCDG 7 cut(s) 42, 159, 230, 378, 388, 499, 570
Lsp1109I GCAGC 2 cut(s) 616, 674
MaeI CTAG 1 cut(s) 474
MaeII ACGT 2 cut(s) 25, 435
MaeIII GTNAC 2 cut(s) 67, 431
MalI GATC 4 cut(s) 51, 229, 600, 672
MboI GATC 4 cut(s) 49, 227, 598, 670
MboII GAAGA 4 cut(s) 71, 113, 277, 394
MfeI CAATTG 2 cut(s) 110, 531
MflI RGATCY 1 cut(s) 598
MhlI GDGCHC 1 cut(s) 158
MluCI AATT 9 cut(s) 110, 211, 258, 362, 412, 458, 531, 541, 579
MnlI CCTC 8 cut(s) 58, 91, 439, 482, 568, 603, 624, 715
MroI TCCGGA 1 cut(s) 485
MroXI GAANNNNTTC 1 cut(s) 105
MseI TTAA 2 cut(s) 296, 462
MspI CCGG 3 cut(s) 146, 375, 486
MspR9I CCNGG 1 cut(s) 376
MunI CAATTG 2 cut(s) 110, 531
Mva1269I GAATGC 1 cut(s) 337
MvnI CGCG 1 cut(s) 189
MwoI GCNNNNNNNGC 2 cut(s) 193, 638
NciI CCSGG 1 cut(s) 376
NdeI CATATG 1 cut(s) 516
NdeII GATC 4 cut(s) 49, 227, 598, 670
NlaIII CATG 1 cut(s) 374
NsbI TGCGCA 1 cut(s) 521
NspI RCATGY 1 cut(s) 374
NspV TTCGAA 1 cut(s) 329
PaeI GCATGC 1 cut(s) 374
PaeR7I CTCGAG 1 cut(s) 695
PaqCI CACCTGC 1 cut(s) 575
PceI AGGCCT 1 cut(s) 613
PctI GAATGC 1 cut(s) 337
PdmI GAANNNNTTC 1 cut(s) 105
PkrI GCNGC 2 cut(s) 631, 664
PspEI GGTNACC 1 cut(s) 67
PspPI GGNCC 1 cut(s) 216
PstI CTGCAG 1 cut(s) 598
PsuI RGATCY 1 cut(s) 598
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
SaqAI TTAA 2 cut(s) 296, 462
SatI GCNGC 2 cut(s) 630, 663
Sau3AI GATC 4 cut(s) 49, 227, 598, 670
Sau96I GGNCC 1 cut(s) 216
ScrFI CCNGG 1 cut(s) 376
SduI GDGCHC 1 cut(s) 158
SetI ASST 8 cut(s) 28, 69, 254, 425, 438, 579, 589, 667
SfcI CTRYAG 1 cut(s) 594
Sfr274I CTCGAG 1 cut(s) 695
SfuI TTCGAA 1 cut(s) 329
SlaI CTCGAG 1 cut(s) 695
SmlI CTYRAG 2 cut(s) 615, 695
SmoI CTYRAG 2 cut(s) 615, 695
SphI GCATGC 1 cut(s) 374
Sse9I AATT 9 cut(s) 110, 211, 258, 362, 412, 458, 531, 541, 579
SseBI AGGCCT 1 cut(s) 613
SsiI CCGC 2 cut(s) 324, 335
SspMI CTAG 1 cut(s) 474
StuI AGGCCT 1 cut(s) 613
StyD4I CCNGG 1 cut(s) 374
StyI CCWWGG 1 cut(s) 729
TaiI ACGT 2 cut(s) 28, 438
TaqI TCGA 3 cut(s) 329, 696, 747
TasI AATT 9 cut(s) 110, 211, 258, 362, 412, 458, 531, 541, 579
Tru1I TTAA 2 cut(s) 296, 462
Tru9I TTAA 2 cut(s) 296, 462
TscAI CASTG 1 cut(s) 36
TseI GCWGC 2 cut(s) 629, 662
TspDTI ATGAA 4 cut(s) 72, 366, 395, 516
TspGWI ACGGA 2 cut(s) 107, 661
TspRI CASTG 1 cut(s) 36
XapI RAATTY 2 cut(s) 258, 541
XceI RCATGY 1 cut(s) 374
XhoI CTCGAG 1 cut(s) 695
XmnI GAANNNNTTC 1 cut(s) 105
XspI CTAG 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.