Rmu_sc0001725.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001725.1
OG0000127
Physical Location & Seq
Reverse (-)
19482 .. 20467
986 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001725.1_g000005.1.cds

Sequence Viewer

Length: 897 bp
atgaagagaaaaactaggaaggccaaaagacacaattttcagagctttgatagttatgctgttgtggagggctttgcacaatttaaagacatccctagccatacatccggaggaacatcaaatgtaggaagtcaacatacgcacacacaaccaattgctgaaaattcccccatcaacttggtcatggatgtagatgaggtaattgtaggtgaaactgcagatcctaatgtgaggcctcaaggaaggaaggctgcgaaagaagcaatacggaaaggaaagaaggcagcgaacaatcaaagtcctttgtcatgcagtctcgagagtatagcgaacaaccaaatagaggcaaccaagggcaagaaaaaactctatgacgaattcactcgaagtctccaagaggaagagaaaagagcatatagggaagagcgtattatggagattgatacaagaaaaatgacgccaaataaaaagcgttattggtcaagaaaacaaaagaagatagcggagaaagaagatcttgacgagcagccgccaccttctatgggtggatactatcagcaacccaatgttggtggtgcattcccacaaccaaattttggtggtgcatacccacaacctccttaccccagtgcatactcacaaccaccttaccccgatgccttcccacaatctcccttaaccggtggattcccaccacctcccttcaccggtgccttcccacaacccccttaccccggtggatactatccgcaaccaccttaccccggaggatatcctacacaaccacaattttcacctttctctacgggtcattccaccaaccataaccctaatgatgagccttcaaacacaaattggatttctagagaggatgaggattatgatttgaataattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

298

Amino Acids

33.4

Weight (kDa)

8.37

Isoelectric Point (pI)

65.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000127)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02381 FvH4_1g19463 FvH4_1g28433 FvH4_2g16143 FvH4_2g18491 FvH4_2g27711 FvH4_3g19631 FvH4_3g23573 FvH4_4g35743 FvH4_5g23701 FvH4_6g19603 FvH4_6g39781 FvH4_6g40561 FvH4_7g02563 FvH4_7g11472 FvH4_7g17530
rosa_chinensis RchiOBHm_Chr1g0315991 RchiOBHm_Chr1g0318371 RchiOBHm_Chr1g0328341 RchiOBHm_Chr1g0331431 RchiOBHm_Chr1g0344801 RchiOBHm_Chr1g0371461 RchiOBHm_Chr1g0379261 RchiOBHm_Chr2g0117661 RchiOBHm_Chr5g0011791 RchiOBHm_Chr5g0020991 RchiOBHm_Chr5g0060631 RchiOBHm_Chr5g0064181 RchiOBHm_Chr5g0080181 RchiOBHm_Chr6g0254691 RchiOBHm_Chr6g0260101 RchiOBHm_Chr6g0290901 RchiOBHm_Chr7g0201691
rosa_laevigata RLG00000003529 RLG00000009370 RLG00000013568
rosa_multiflora Rmu_co8437743.1_g000001 Rmu_sc0000063.1_g000028 Rmu_sc0000098.1_g000004 Rmu_sc0000166.1_g000028 Rmu_sc0000258.1_g000102 Rmu_sc0000288.1_g000018 Rmu_sc0000333.1_g000043 Rmu_sc0000451.1_g000011 Rmu_sc0000455.1_g000003 Rmu_sc0000479.1_g000002 Rmu_sc0000687.1_g000014 Rmu_sc0000733.1_g000024 Rmu_sc0000736.1_g000001 Rmu_sc0000745.1_g000017 Rmu_sc0000760.1_g000031 Rmu_sc0000776.1_g000044 Rmu_sc0000828.1_g000011 Rmu_sc0000830.1_g000027 Rmu_sc0000857.1_g000025 Rmu_sc0000864.1_g000013 Rmu_sc0001016.1_g000034 Rmu_sc0001016.1_g000035 Rmu_sc0001036.1_g000015 Rmu_sc0001096.1_g000020 Rmu_sc0001145.1_g000023 Rmu_sc0001167.1_g000057 Rmu_sc0001173.1_g000030 Rmu_sc0001260.1_g000006 Rmu_sc0001266.1_g000016 Rmu_sc0001346.1_g000003 Rmu_sc0001346.1_g000004 Rmu_sc0001386.1_g000005 Rmu_sc0001501.1_g000057 Rmu_sc0001565.1_g000058 Rmu_sc0001634.1_g000047 Rmu_sc0001699.1_g000018 Rmu_sc0001700.1_g000041 Rmu_sc0001700.1_g000055 Rmu_sc0001725.1_g000005 Rmu_sc0001823.1_g000005 Rmu_sc0001877.1_g000014 Rmu_sc0001942.1_g000059 Rmu_sc0001966.1_g000033 Rmu_sc0001998.1_g000009 Rmu_sc0002011.1_g000030 Rmu_sc0002147.1_g000007 Rmu_sc0002176.1_g000005 Rmu_sc0002235.1_g000097 Rmu_sc0002324.1_g000002 Rmu_sc0002352.1_g000011 Rmu_sc0002365.1_g000022 Rmu_sc0002548.1_g000007 Rmu_sc0002890.1_g000008 Rmu_sc0002936.1_g000003 Rmu_sc0002955.1_g000016 Rmu_sc0003160.1_g000032 Rmu_sc0003452.1_g000010 Rmu_sc0003490.1_g000023 Rmu_sc0003541.1_g000014 Rmu_sc0003555.1_g000014 Rmu_sc0003759.1_g000008 Rmu_sc0003843.1_g000001 Rmu_sc0003846.1_g000005 Rmu_sc0003890.1_g000019 Rmu_sc0003953.1_g000016 Rmu_sc0003967.1_g000001 Rmu_sc0004068.1_g000002 Rmu_sc0004101.1_g000004 Rmu_sc0004298.1_g000010 Rmu_sc0004507.1_g000008 Rmu_sc0004649.1_g000015 Rmu_sc0004719.1_g000006 Rmu_sc0004751.1_g000012 Rmu_sc0004821.1_g000005 Rmu_sc0004868.1_g000003 Rmu_sc0004876.1_g000023 Rmu_sc0004932.1_g000020 Rmu_sc0005093.1_g000020 Rmu_sc0005132.1_g000019 Rmu_sc0005274.1_g000001 Rmu_sc0005381.1_g000013 Rmu_sc0005693.1_g000009 Rmu_sc0005708.1_g000011 Rmu_sc0005834.1_g000016 Rmu_sc0005966.1_g000017 Rmu_sc0006173.1_g000033 Rmu_sc0006175.1_g000012 Rmu_sc0006590.1_g000004 Rmu_sc0006695.1_g000044 Rmu_sc0007061.1_g000002 Rmu_sc0007069.1_g000023 Rmu_sc0007216.1_g000006 Rmu_sc0008124.1_g000026 Rmu_sc0008148.1_g000028 Rmu_sc0008198.1_g000004 Rmu_sc0008423.1_g000003 Rmu_sc0008441.1_g000011 Rmu_sc0008707.1_g000005 Rmu_sc0009101.1_g000008 Rmu_sc0009240.1_g000039 Rmu_sc0009414.1_g000002 Rmu_sc0009628.1_g000001 Rmu_sc0010048.1_g000007 Rmu_sc0010275.1_g000001 Rmu_sc0010338.1_g000004 Rmu_sc0010659.1_g000005 Rmu_sc0010691.1_g000001 Rmu_sc0011023.1_g000006 Rmu_sc0011533.1_g000001 Rmu_sc0011901.1_g000001 Rmu_sc0012746.1_g000042 Rmu_sc0012773.1_g000005 Rmu_sc0012952.1_g000005 Rmu_sc0014568.1_g000002 Rmu_sc0014568.1_g000003 Rmu_sc0015188.1_g000004 Rmu_sc0019714.1_g000001 Rmu_sc0020148.1_g000003 Rmu_sc0020260.1_g000003 Rmu_sc0021213.1_g000002 Rmu_sc0022616.1_g000001 Rmu_ssc0000084.1_g000006 Rmu_ssc0000116.1_g000017 Rmu_ssc0000116.1_g000018 Rmu_ssc0000189.1_g000037 Rmu_ssc0000330.1_g000009 Rmu_ssc0000359.1_g000004 Rmu_ssc0000366.1_g000031 Rmu_ssc0000386.1_g000056 Rmu_ssc0000387.1_g000006 Rmu_ssc0000400.1_g000065 Rmu_ssc0000440.1_g000006 Rmu_ssc0000452.1_g000014
rosa_roxburghii Rroxscaffold_1G00020180 Rroxscaffold_2G00089580 Rroxscaffold_2G00143500 Rroxscaffold_3G00264360 Rroxscaffold_4G00316450 Rroxscaffold_4G00327050 Rroxscaffold_5G00350260 Rroxscaffold_5G00351750 Rroxscaffold_5G00364680 Rroxscaffold_5G00376220 Rroxscaffold_6G00391720
rosa_rugosa Rorug04G0096700 Rorug05G0284300 Rorug06G0059800 Rorug06G0059900 Rorug06G0060000 Rorug06G0060100 Rorug06G0060200 Rorug06G0127700 Rorug06G0243400
rosa_samantha Rh1AG033000 Rh1AG274600 Rh1DG069700 Rh2DG069900 Rh2DG210700 Rh2DG560100 Rh3AG245500 Rh3BG095400 Rh4AG018100 Rh4AG084900 Rh4AG177900 Rh4CG092300 Rh4CG194700 Rh5BG350600 Rh6BG362400 Rh7DG198200 Rh7DG403500
rosa_wichuraiana Rw1G008260 Rw1G035940 Rw2G027180 Rw4G003470 Rw4G010610 Rw5G037240 Rw6G036490 Rw7G015690 Rw7G028950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 710
AccB7I CCANNNNNTGG 1 cut(s) 596
AccIII TCCGGA 1 cut(s) 107
AciI CCGC 3 cut(s) 503, 530, 749
AclWI GGATC 1 cut(s) 215
AcsI RAATTY 3 cut(s) 163, 377, 592
AcyI GRCGYC 1 cut(s) 458
AfiI CCNNNNNNNGG 8 cut(s) 343, 542, 569, 596, 680, 707, 734, 764
AgeI ACCGGT 2 cut(s) 680, 707
AgsI TTSAA 2 cut(s) 846, 889
AluBI AGCT 1 cut(s) 45
AluI AGCT 1 cut(s) 45
Alw26I GTCTC 2 cut(s) 320, 395
AlwI GGATC 1 cut(s) 215
Ama87I CYCGRG 1 cut(s) 317
Aor13HI TCCGGA 1 cut(s) 107
AoxI GGCC 2 cut(s) 21, 233
ApeKI GCWGC 3 cut(s) 251, 284, 526
ApoI RAATTY 3 cut(s) 163, 377, 592
AsiGI ACCGGT 2 cut(s) 680, 707
AsuC2I CCSGG 2 cut(s) 735, 765
AsuHPI GGTGA 3 cut(s) 221, 697, 786
AvaI CYCGRG 1 cut(s) 317
BanI GGYRCC 1 cut(s) 710
BarI GAAGNNNNNNTAC 2 cut(s) 121, 153
BbvI GCAGC 3 cut(s) 238, 296, 538
BccI CCATC 1 cut(s) 179
BciVI GTATCC 2 cut(s) 542, 734
BcnI CCSGG 2 cut(s) 735, 765
BcoDI GTCTC 2 cut(s) 320, 395
BfaI CTAG 3 cut(s) 15, 96, 864
BfmI CTRYAG 1 cut(s) 216
BfuI GTATCC 2 cut(s) 542, 734
BglII AGATCT 1 cut(s) 514
BisI GCNGC 4 cut(s) 252, 285, 527, 530
BlsI GCNGC 4 cut(s) 253, 286, 528, 531
Bme1390I CCNGG 2 cut(s) 735, 765
BmeT110I CYCGRG 1 cut(s) 317
BmiI GGNNCC 1 cut(s) 712
BmrFI CCNGG 2 cut(s) 735, 765
BmrI ACTGGG 1 cut(s) 621
BmsI GCATC 1 cut(s) 646
BmuI ACTGGG 1 cut(s) 621
BpuEI CTTGAG 1 cut(s) 222
BpuMI CCSGG 2 cut(s) 735, 765
BsaHI GRCGYC 1 cut(s) 458
BsaJI CCNNGG 3 cut(s) 351, 733, 763
BsaWI WCCGGW 3 cut(s) 107, 680, 707
Bsc4I CCNNNNNNNGG 8 cut(s) 343, 542, 569, 596, 680, 707, 734, 764
Bse118I RCCGGY 2 cut(s) 680, 707
Bse1I ACTGG 1 cut(s) 627
BseAI TCCGGA 1 cut(s) 107
BseDI CCNNGG 3 cut(s) 351, 733, 763
BseGI GGATG 4 cut(s) 90, 104, 193, 877
BseLI CCNNNNNNNGG 8 cut(s) 343, 542, 569, 596, 680, 707, 734, 764
BseNI ACTGG 1 cut(s) 627
BseXI GCAGC 3 cut(s) 238, 296, 538
BshFI GGCC 2 cut(s) 23, 235
BshNI GGYRCC 1 cut(s) 710
BshTI ACCGGT 2 cut(s) 680, 707
BsiHKCI CYCGRG 1 cut(s) 317
BsiSI CCGG 5 cut(s) 108, 681, 708, 735, 765
BslI CCNNNNNNNGG 8 cut(s) 343, 542, 569, 596, 680, 707, 734, 764
BsmAI GTCTC 2 cut(s) 320, 395
BsmI GAATGC 1 cut(s) 578
BsnI GGCC 2 cut(s) 23, 235
BsoBI CYCGRG 1 cut(s) 317
Bsp13I TCCGGA 1 cut(s) 107
Bsp143I GATC 2 cut(s) 220, 514
BspACI CCGC 3 cut(s) 503, 530, 749
BspANI GGCC 2 cut(s) 23, 235
BspEI TCCGGA 1 cut(s) 107
BspLI GGNNCC 1 cut(s) 712
BspMAI CTGCAG 1 cut(s) 220
BspPI GGATC 1 cut(s) 215
BspQI GCTCTTC 1 cut(s) 417
BspT107I GGYRCC 1 cut(s) 710
BsrFI RCCGGY 2 cut(s) 680, 707
BsrI ACTGG 1 cut(s) 627
BssAI RCCGGY 2 cut(s) 680, 707
BssECI CCNNGG 3 cut(s) 351, 733, 763
BssMI GATC 2 cut(s) 220, 514
BssNI GRCGYC 1 cut(s) 458
BssT1I CCWWGG 1 cut(s) 351
Bst6I CTCTTC 2 cut(s) 396, 417
BstACI GRCGYC 1 cut(s) 458
BstF5I GGATG 4 cut(s) 90, 104, 193, 877
BstKTI GATC 2 cut(s) 223, 517
BstMAI GTCTC 2 cut(s) 320, 395
BstMBI GATC 2 cut(s) 220, 514
BstMWI GCNNNNNNNGC 1 cut(s) 260
BstSCI CCNGG 2 cut(s) 733, 763
BstSFI CTRYAG 1 cut(s) 216
BstV1I GCAGC 3 cut(s) 238, 296, 538
BstX2I RGATCY 2 cut(s) 220, 514
BstXI CCANNNNNNTGG 1 cut(s) 178
BstYI RGATCY 2 cut(s) 220, 514
BsuI GTATCC 2 cut(s) 542, 734
BsuRI GGCC 2 cut(s) 23, 235
BtsCI GGATG 4 cut(s) 90, 104, 193, 877
BtsIMutI CAGTG 1 cut(s) 634
Cfr10I RCCGGY 2 cut(s) 680, 707
CseI GACGC 1 cut(s) 466
CspAI ACCGGT 2 cut(s) 680, 707
CspCI CAANNNNNGTGG 2 cut(s) 553, 588
CviAII CATG 2 cut(s) 184, 309
CviJI RGCY 8 cut(s) 23, 45, 72, 99, 235, 251, 529, 841
CviKI_1 RGCY 8 cut(s) 23, 45, 72, 99, 235, 251, 529, 841
DpnI GATC 2 cut(s) 222, 516
DpnII GATC 2 cut(s) 220, 514
DraI TTTAAA 1 cut(s) 85
Eam1104I CTCTTC 2 cut(s) 396, 417
EarI CTCTTC 2 cut(s) 396, 417
Eco130I CCWWGG 1 cut(s) 351
Eco147I AGGCCT 1 cut(s) 235
Eco32I GATATC 1 cut(s) 773
Eco88I CYCGRG 1 cut(s) 317
EcoRI GAATTC 1 cut(s) 377
EcoRV GATATC 1 cut(s) 773
EcoT14I CCWWGG 1 cut(s) 351
ErhI CCWWGG 1 cut(s) 351
FaeI CATG 2 cut(s) 187, 312
FalI AAGNNNNNCTT 2 cut(s) 501, 533
FatI CATG 2 cut(s) 183, 308
Fnu4HI GCNGC 4 cut(s) 252, 285, 527, 530
FokI GGATG 4 cut(s) 77, 91, 200, 884
Fsp4HI GCNGC 4 cut(s) 252, 285, 527, 530
FspBI CTAG 3 cut(s) 15, 96, 864
GluI GCNGC 4 cut(s) 252, 285, 527, 530
HaeIII GGCC 2 cut(s) 23, 235
HapII CCGG 5 cut(s) 108, 681, 708, 735, 765
HgaI GACGC 1 cut(s) 466
Hin1I GRCGYC 1 cut(s) 458
Hin1II CATG 2 cut(s) 187, 312
HincII GTYRAC 1 cut(s) 134
HindII GTYRAC 1 cut(s) 134
HinfI GANTC 1 cut(s) 687
HpaII CCGG 5 cut(s) 108, 681, 708, 735, 765
HphI GGTGA 3 cut(s) 221, 697, 786
Hpy166II GTNNAC 1 cut(s) 134
Hpy188I TCNGA 1 cut(s) 42
Hpy188III TCNNGA 6 cut(s) 108, 317, 319, 483, 518, 864
Hpy8I GTNNAC 1 cut(s) 134
HpyAV CCTTC 9 cut(s) 13, 237, 241, 274, 546, 670, 712, 724, 852
HpyCH4V TGCA 6 cut(s) 77, 218, 312, 578, 605, 632
HpyF10VI GCNNNNNNNGC 1 cut(s) 260
Hsp92I GRCGYC 1 cut(s) 458
Hsp92II CATG 2 cut(s) 187, 312
Kpn2I TCCGGA 1 cut(s) 107
Kzo9I GATC 2 cut(s) 220, 514
LguI GCTCTTC 1 cut(s) 417
LpnPI CCDG 6 cut(s) 121, 640, 694, 721, 748, 778
Lsp1109I GCAGC 3 cut(s) 238, 296, 538
LweI GCATC 1 cut(s) 646
MaeI CTAG 3 cut(s) 15, 96, 864
MalI GATC 2 cut(s) 222, 516
MboI GATC 2 cut(s) 220, 514
MboII GAAGA 5 cut(s) 16, 413, 434, 508, 524
MfeI CAATTG 1 cut(s) 153
MflI RGATCY 2 cut(s) 220, 514
MroI TCCGGA 1 cut(s) 107
MseI TTAA 2 cut(s) 84, 677
MspI CCGG 5 cut(s) 108, 681, 708, 735, 765
MspR9I CCNGG 2 cut(s) 735, 765
MunI CAATTG 1 cut(s) 153
Mva1269I GAATGC 1 cut(s) 578
MwoI GCNNNNNNNGC 1 cut(s) 260
NciI CCSGG 2 cut(s) 735, 765
NdeII GATC 2 cut(s) 220, 514
NlaIII CATG 2 cut(s) 187, 312
NlaIV GGNNCC 1 cut(s) 712
PaeR7I CTCGAG 1 cut(s) 317
PceI AGGCCT 1 cut(s) 235
PciSI GCTCTTC 1 cut(s) 417
PctI GAATGC 1 cut(s) 578
PfeI GAWTC 1 cut(s) 687
PflMI CCANNNNNTGG 1 cut(s) 596
PinAI ACCGGT 2 cut(s) 680, 707
PkrI GCNGC 4 cut(s) 253, 286, 528, 531
PspN4I GGNNCC 1 cut(s) 712
PstI CTGCAG 1 cut(s) 220
PsuI RGATCY 2 cut(s) 220, 514
SapI GCTCTTC 1 cut(s) 417
SaqAI TTAA 2 cut(s) 84, 677
SatI GCNGC 4 cut(s) 252, 285, 527, 530
Sau3AI GATC 2 cut(s) 220, 514
ScrFI CCNGG 2 cut(s) 735, 765
SetI ASST 9 cut(s) 47, 201, 211, 538, 619, 649, 700, 760, 799
SfaNI GCATC 1 cut(s) 646
SfcI CTRYAG 1 cut(s) 216
Sfr274I CTCGAG 1 cut(s) 317
SgrAI CRCCGGYG 1 cut(s) 707
SlaI CTCGAG 1 cut(s) 317
SmlI CTYRAG 2 cut(s) 237, 317
SmoI CTYRAG 2 cut(s) 237, 317
SseBI AGGCCT 1 cut(s) 235
SsiI CCGC 3 cut(s) 503, 530, 749
SspMI CTAG 3 cut(s) 15, 96, 864
StuI AGGCCT 1 cut(s) 235
StyD4I CCNGG 2 cut(s) 733, 763
StyI CCWWGG 1 cut(s) 351
TaqI TCGA 2 cut(s) 318, 385
TauI GCSGC 1 cut(s) 532
TfiI GAWTC 1 cut(s) 687
Tru1I TTAA 2 cut(s) 84, 677
Tru9I TTAA 2 cut(s) 84, 677
TscAI CASTG 1 cut(s) 634
TseI GCWGC 3 cut(s) 251, 284, 526
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 283
TspRI CASTG 1 cut(s) 634
Van91I CCANNNNNTGG 1 cut(s) 596
XapI RAATTY 3 cut(s) 163, 377, 592
XbaI TCTAGA 1 cut(s) 863
XhoI CTCGAG 1 cut(s) 317
XspI CTAG 3 cut(s) 15, 96, 864
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.