Rmu_sc0003890.1_g000019

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003890.1
OG0000127
Physical Location & Seq
Reverse (-)
99138 .. 99941
804 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003890.1_g000019.1.cds

Sequence Viewer

Length: 732 bp
atggatgtagatgaggtaattgcaggtgaaactgcagatcctaatgtgaggcctcaaggaaggaatgctgcgaaagaagcaatacggaaaggaaagaaggcagcgaaagatcaaagtcctttgtcaagcagtctcgagagtatagcgaacaaccaaatagaggcaaccaagggcaagaaaaaactcgatgatgaattcgctcgaagtctccaagaggaagagaaaagagcatgtatcctcttgcaaatcgaaatacaagaagagcaactcctatttcaagaaaggcaagatcgaattaaagagagggaagagcgaaataaagagagagaagagcgtattatggagattgatacaagtaaaatgacgccaaataaaaagcgtggatactatccgcaacccaattttggtggtgcattcccacaacaaaattttggtggtgcatacccacaacctctttaccctggtgcatacccacaaccaccttgccccgatgcattcccacaaccttccttaaccgggggattcccaccacctcccttcaccggtggattcgcacaacccccttaccccggtggatactatccgcaaccaccttaccccggggaatatcctacacaaccacaattttcatatttccctacgggtgattccaccaaccctaaccctaatgatgagccttcaaacacaaattggatttctagagaggatgaggattatgatttgaataattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

243

Amino Acids

27.4

Weight (kDa)

4.77

Isoelectric Point (pI)

70.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000127)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02381 FvH4_1g19463 FvH4_1g28433 FvH4_2g16143 FvH4_2g18491 FvH4_2g27711 FvH4_3g19631 FvH4_3g23573 FvH4_4g35743 FvH4_5g23701 FvH4_6g19603 FvH4_6g39781 FvH4_6g40561 FvH4_7g02563 FvH4_7g11472 FvH4_7g17530
rosa_chinensis RchiOBHm_Chr1g0315991 RchiOBHm_Chr1g0318371 RchiOBHm_Chr1g0328341 RchiOBHm_Chr1g0331431 RchiOBHm_Chr1g0344801 RchiOBHm_Chr1g0371461 RchiOBHm_Chr1g0379261 RchiOBHm_Chr2g0117661 RchiOBHm_Chr5g0011791 RchiOBHm_Chr5g0020991 RchiOBHm_Chr5g0060631 RchiOBHm_Chr5g0064181 RchiOBHm_Chr5g0080181 RchiOBHm_Chr6g0254691 RchiOBHm_Chr6g0260101 RchiOBHm_Chr6g0290901 RchiOBHm_Chr7g0201691
rosa_laevigata RLG00000003529 RLG00000009370 RLG00000013568
rosa_multiflora Rmu_co8437743.1_g000001 Rmu_sc0000063.1_g000028 Rmu_sc0000098.1_g000004 Rmu_sc0000166.1_g000028 Rmu_sc0000258.1_g000102 Rmu_sc0000288.1_g000018 Rmu_sc0000333.1_g000043 Rmu_sc0000451.1_g000011 Rmu_sc0000455.1_g000003 Rmu_sc0000479.1_g000002 Rmu_sc0000687.1_g000014 Rmu_sc0000733.1_g000024 Rmu_sc0000736.1_g000001 Rmu_sc0000745.1_g000017 Rmu_sc0000760.1_g000031 Rmu_sc0000776.1_g000044 Rmu_sc0000828.1_g000011 Rmu_sc0000830.1_g000027 Rmu_sc0000857.1_g000025 Rmu_sc0000864.1_g000013 Rmu_sc0001016.1_g000034 Rmu_sc0001016.1_g000035 Rmu_sc0001036.1_g000015 Rmu_sc0001096.1_g000020 Rmu_sc0001145.1_g000023 Rmu_sc0001167.1_g000057 Rmu_sc0001173.1_g000030 Rmu_sc0001260.1_g000006 Rmu_sc0001266.1_g000016 Rmu_sc0001346.1_g000003 Rmu_sc0001346.1_g000004 Rmu_sc0001386.1_g000005 Rmu_sc0001501.1_g000057 Rmu_sc0001565.1_g000058 Rmu_sc0001634.1_g000047 Rmu_sc0001699.1_g000018 Rmu_sc0001700.1_g000041 Rmu_sc0001700.1_g000055 Rmu_sc0001725.1_g000005 Rmu_sc0001823.1_g000005 Rmu_sc0001877.1_g000014 Rmu_sc0001942.1_g000059 Rmu_sc0001966.1_g000033 Rmu_sc0001998.1_g000009 Rmu_sc0002011.1_g000030 Rmu_sc0002147.1_g000007 Rmu_sc0002176.1_g000005 Rmu_sc0002235.1_g000097 Rmu_sc0002324.1_g000002 Rmu_sc0002352.1_g000011 Rmu_sc0002365.1_g000022 Rmu_sc0002548.1_g000007 Rmu_sc0002890.1_g000008 Rmu_sc0002936.1_g000003 Rmu_sc0002955.1_g000016 Rmu_sc0003160.1_g000032 Rmu_sc0003452.1_g000010 Rmu_sc0003490.1_g000023 Rmu_sc0003541.1_g000014 Rmu_sc0003555.1_g000014 Rmu_sc0003759.1_g000008 Rmu_sc0003843.1_g000001 Rmu_sc0003846.1_g000005 Rmu_sc0003890.1_g000019 Rmu_sc0003953.1_g000016 Rmu_sc0003967.1_g000001 Rmu_sc0004068.1_g000002 Rmu_sc0004101.1_g000004 Rmu_sc0004298.1_g000010 Rmu_sc0004507.1_g000008 Rmu_sc0004649.1_g000015 Rmu_sc0004719.1_g000006 Rmu_sc0004751.1_g000012 Rmu_sc0004821.1_g000005 Rmu_sc0004868.1_g000003 Rmu_sc0004876.1_g000023 Rmu_sc0004932.1_g000020 Rmu_sc0005093.1_g000020 Rmu_sc0005132.1_g000019 Rmu_sc0005274.1_g000001 Rmu_sc0005381.1_g000013 Rmu_sc0005693.1_g000009 Rmu_sc0005708.1_g000011 Rmu_sc0005834.1_g000016 Rmu_sc0005966.1_g000017 Rmu_sc0006173.1_g000033 Rmu_sc0006175.1_g000012 Rmu_sc0006590.1_g000004 Rmu_sc0006695.1_g000044 Rmu_sc0007061.1_g000002 Rmu_sc0007069.1_g000023 Rmu_sc0007216.1_g000006 Rmu_sc0008124.1_g000026 Rmu_sc0008148.1_g000028 Rmu_sc0008198.1_g000004 Rmu_sc0008423.1_g000003 Rmu_sc0008441.1_g000011 Rmu_sc0008707.1_g000005 Rmu_sc0009101.1_g000008 Rmu_sc0009240.1_g000039 Rmu_sc0009414.1_g000002 Rmu_sc0009628.1_g000001 Rmu_sc0010048.1_g000007 Rmu_sc0010275.1_g000001 Rmu_sc0010338.1_g000004 Rmu_sc0010659.1_g000005 Rmu_sc0010691.1_g000001 Rmu_sc0011023.1_g000006 Rmu_sc0011533.1_g000001 Rmu_sc0011901.1_g000001 Rmu_sc0012746.1_g000042 Rmu_sc0012773.1_g000005 Rmu_sc0012952.1_g000005 Rmu_sc0014568.1_g000002 Rmu_sc0014568.1_g000003 Rmu_sc0015188.1_g000004 Rmu_sc0019714.1_g000001 Rmu_sc0020148.1_g000003 Rmu_sc0020260.1_g000003 Rmu_sc0021213.1_g000002 Rmu_sc0022616.1_g000001 Rmu_ssc0000084.1_g000006 Rmu_ssc0000116.1_g000017 Rmu_ssc0000116.1_g000018 Rmu_ssc0000189.1_g000037 Rmu_ssc0000330.1_g000009 Rmu_ssc0000359.1_g000004 Rmu_ssc0000366.1_g000031 Rmu_ssc0000386.1_g000056 Rmu_ssc0000387.1_g000006 Rmu_ssc0000400.1_g000065 Rmu_ssc0000440.1_g000006 Rmu_ssc0000452.1_g000014
rosa_roxburghii Rroxscaffold_1G00020180 Rroxscaffold_2G00089580 Rroxscaffold_2G00143500 Rroxscaffold_3G00264360 Rroxscaffold_4G00316450 Rroxscaffold_4G00327050 Rroxscaffold_5G00350260 Rroxscaffold_5G00351750 Rroxscaffold_5G00364680 Rroxscaffold_5G00376220 Rroxscaffold_6G00391720
rosa_rugosa Rorug04G0096700 Rorug05G0284300 Rorug06G0059800 Rorug06G0059900 Rorug06G0060000 Rorug06G0060100 Rorug06G0060200 Rorug06G0127700 Rorug06G0243400
rosa_samantha Rh1AG033000 Rh1AG274600 Rh1DG069700 Rh2DG069900 Rh2DG210700 Rh2DG560100 Rh3AG245500 Rh3BG095400 Rh4AG018100 Rh4AG084900 Rh4AG177900 Rh4CG092300 Rh4CG194700 Rh5BG350600 Rh6BG362400 Rh7DG198200 Rh7DG403500
rosa_wichuraiana Rw1G008260 Rw1G035940 Rw2G027180 Rw4G003470 Rw4G010610 Rw5G037240 Rw6G036490 Rw7G015690 Rw7G028950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 14
Acc36I ACCTGC 1 cut(s) 14
AciI CCGC 2 cut(s) 392, 584
AclWI GGATC 1 cut(s) 32
AcsI RAATTY 2 cut(s) 194, 427
AcyI GRCGYC 1 cut(s) 365
AfiI CCNNNNNNNGG 6 cut(s) 160, 404, 516, 542, 569, 599
AgeI ACCGGT 1 cut(s) 542
AgsI TTSAA 3 cut(s) 278, 681, 724
AjnI CCWGG 1 cut(s) 460
Alw26I GTCTC 2 cut(s) 137, 212
AlwI GGATC 1 cut(s) 32
Ama87I CYCGRG 2 cut(s) 134, 599
AoxI GGCC 1 cut(s) 50
ApeKI GCWGC 2 cut(s) 68, 101
ApoI RAATTY 2 cut(s) 194, 427
AsiGI ACCGGT 1 cut(s) 542
AsuC2I CCSGG 4 cut(s) 517, 570, 600, 601
AsuHPI GGTGA 3 cut(s) 38, 532, 656
AvaI CYCGRG 2 cut(s) 134, 599
BbvI GCAGC 2 cut(s) 55, 113
BciT130I CCWGG 1 cut(s) 462
BciVI GTATCC 3 cut(s) 245, 377, 569
BcnI CCSGG 4 cut(s) 517, 570, 600, 601
BcoDI GTCTC 2 cut(s) 137, 212
BfaI CTAG 1 cut(s) 699
BfmI CTRYAG 1 cut(s) 33
BfuAI ACCTGC 1 cut(s) 14
BfuI GTATCC 3 cut(s) 245, 377, 569
BisI GCNGC 2 cut(s) 69, 102
BlsI GCNGC 2 cut(s) 70, 103
Bme1390I CCNGG 5 cut(s) 462, 517, 570, 600, 601
BmeT110I CYCGRG 2 cut(s) 134, 599
BmrFI CCNGG 5 cut(s) 462, 517, 570, 600, 601
BmsI GCATC 1 cut(s) 481
BpuEI CTTGAG 1 cut(s) 39
BpuMI CCSGG 4 cut(s) 517, 570, 600, 601
BsaHI GRCGYC 1 cut(s) 365
BsaJI CCNNGG 7 cut(s) 168, 460, 516, 568, 598, 599, 600
BsaWI WCCGGW 1 cut(s) 542
Bsc4I CCNNNNNNNGG 6 cut(s) 160, 404, 516, 542, 569, 599
Bse118I RCCGGY 1 cut(s) 542
BseBI CCWGG 1 cut(s) 462
BseDI CCNNGG 7 cut(s) 168, 460, 516, 568, 598, 599, 600
BseGI GGATG 2 cut(s) 10, 712
BseLI CCNNNNNNNGG 6 cut(s) 160, 404, 516, 542, 569, 599
BseXI GCAGC 2 cut(s) 55, 113
BshFI GGCC 1 cut(s) 52
BshTI ACCGGT 1 cut(s) 542
BsiHKCI CYCGRG 2 cut(s) 134, 599
BsiSI CCGG 4 cut(s) 516, 543, 570, 600
BslI CCNNNNNNNGG 6 cut(s) 160, 404, 516, 542, 569, 599
BsmAI GTCTC 2 cut(s) 137, 212
BsmI GAATGC 3 cut(s) 70, 413, 494
BsnI GGCC 1 cut(s) 52
BsoBI CYCGRG 2 cut(s) 134, 599
Bsp143I GATC 3 cut(s) 37, 109, 289
BspACI CCGC 2 cut(s) 392, 584
BspANI GGCC 1 cut(s) 52
BspMAI CTGCAG 1 cut(s) 37
BspMI ACCTGC 1 cut(s) 14
BspPI GGATC 1 cut(s) 32
BspQI GCTCTTC 3 cut(s) 255, 303, 324
BsrFI RCCGGY 1 cut(s) 542
BssAI RCCGGY 1 cut(s) 542
BssECI CCNNGG 7 cut(s) 168, 460, 516, 568, 598, 599, 600
BssMI GATC 3 cut(s) 37, 109, 289
BssNI GRCGYC 1 cut(s) 365
BssT1I CCWWGG 1 cut(s) 168
Bst2UI CCWGG 1 cut(s) 462
Bst6I CTCTTC 4 cut(s) 213, 255, 303, 324
BstACI GRCGYC 1 cut(s) 365
BstF5I GGATG 2 cut(s) 10, 712
BstKTI GATC 3 cut(s) 40, 112, 292
BstMAI GTCTC 2 cut(s) 137, 212
BstMBI GATC 3 cut(s) 37, 109, 289
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstNI CCWGG 1 cut(s) 462
BstNSI RCATGY 1 cut(s) 234
BstSCI CCNGG 5 cut(s) 460, 515, 568, 598, 599
BstSFI CTRYAG 1 cut(s) 33
BstV1I GCAGC 2 cut(s) 55, 113
BstX2I RGATCY 1 cut(s) 37
BstYI RGATCY 1 cut(s) 37
BsuI GTATCC 3 cut(s) 245, 377, 569
BsuRI GGCC 1 cut(s) 52
BtsCI GGATG 2 cut(s) 10, 712
BveI ACCTGC 1 cut(s) 14
Cfr10I RCCGGY 1 cut(s) 542
Cfr9I CCCGGG 1 cut(s) 599
CseI GACGC 1 cut(s) 373
CspAI ACCGGT 1 cut(s) 542
CspCI CAANNNNNGTGG 2 cut(s) 388, 423
CviAII CATG 1 cut(s) 231
CviJI RGCY 2 cut(s) 52, 676
CviKI_1 RGCY 2 cut(s) 52, 676
DpnI GATC 3 cut(s) 39, 111, 291
DpnII GATC 3 cut(s) 37, 109, 289
Eam1104I CTCTTC 4 cut(s) 213, 255, 303, 324
EarI CTCTTC 4 cut(s) 213, 255, 303, 324
Eco130I CCWWGG 1 cut(s) 168
Eco147I AGGCCT 1 cut(s) 52
Eco88I CYCGRG 2 cut(s) 134, 599
EcoRI GAATTC 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 460
EcoT14I CCWWGG 1 cut(s) 168
EcoT22I ATGCAT 1 cut(s) 496
ErhI CCWWGG 1 cut(s) 168
FaeI CATG 1 cut(s) 234
FaiI YATR 7 cut(s) 143, 232, 341, 442, 469, 631, 717
FatI CATG 1 cut(s) 230
Fnu4HI GCNGC 2 cut(s) 69, 102
FokI GGATG 2 cut(s) 17, 719
Fsp4HI GCNGC 2 cut(s) 69, 102
FspBI CTAG 1 cut(s) 699
GluI GCNGC 2 cut(s) 69, 102
HaeIII GGCC 1 cut(s) 52
HapII CCGG 4 cut(s) 516, 543, 570, 600
HgaI GACGC 1 cut(s) 373
Hin1I GRCGYC 1 cut(s) 365
Hin1II CATG 1 cut(s) 234
HinfI GANTC 3 cut(s) 522, 549, 647
HpaII CCGG 4 cut(s) 516, 543, 570, 600
HphI GGTGA 3 cut(s) 38, 532, 656
Hpy188III TCNNGA 4 cut(s) 134, 136, 278, 699
HpyAV CCTTC 5 cut(s) 54, 91, 516, 547, 687
HpyCH4V TGCA 7 cut(s) 23, 35, 244, 413, 440, 467, 494
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
Hsp92I GRCGYC 1 cut(s) 365
Hsp92II CATG 1 cut(s) 234
Kzo9I GATC 3 cut(s) 37, 109, 289
LguI GCTCTTC 3 cut(s) 255, 303, 324
LpnPI CCDG 7 cut(s) 9, 447, 474, 529, 556, 583, 613
Lsp1109I GCAGC 2 cut(s) 55, 113
LweI GCATC 1 cut(s) 481
MaeI CTAG 1 cut(s) 699
MalI GATC 3 cut(s) 39, 111, 291
MboI GATC 3 cut(s) 37, 109, 289
MboII GAAGA 4 cut(s) 230, 272, 320, 341
MflI RGATCY 1 cut(s) 37
MluCI AATT 8 cut(s) 18, 194, 294, 400, 427, 623, 688, 727
Mph1103I ATGCAT 1 cut(s) 496
MseI TTAA 2 cut(s) 297, 512
MspI CCGG 4 cut(s) 516, 543, 570, 600
MspR9I CCNGG 5 cut(s) 462, 517, 570, 600, 601
Mva1269I GAATGC 3 cut(s) 70, 413, 494
MvaI CCWGG 1 cut(s) 462
MwoI GCNNNNNNNGC 1 cut(s) 77
NciI CCSGG 4 cut(s) 517, 570, 600, 601
NdeII GATC 3 cut(s) 37, 109, 289
NlaIII CATG 1 cut(s) 234
NsiI ATGCAT 1 cut(s) 496
NspI RCATGY 1 cut(s) 234
PaeR7I CTCGAG 1 cut(s) 134
PaqCI CACCTGC 1 cut(s) 14
PceI AGGCCT 1 cut(s) 52
PciSI GCTCTTC 3 cut(s) 255, 303, 324
PctI GAATGC 3 cut(s) 70, 413, 494
PfeI GAWTC 3 cut(s) 522, 549, 647
PinAI ACCGGT 1 cut(s) 542
PkrI GCNGC 2 cut(s) 70, 103
Psp6I CCWGG 1 cut(s) 460
PspGI CCWGG 1 cut(s) 460
PstI CTGCAG 1 cut(s) 37
PsuI RGATCY 1 cut(s) 37
SapI GCTCTTC 3 cut(s) 255, 303, 324
SaqAI TTAA 2 cut(s) 297, 512
SatI GCNGC 2 cut(s) 69, 102
Sau3AI GATC 3 cut(s) 37, 109, 289
ScrFI CCNGG 5 cut(s) 462, 517, 570, 600, 601
SetI ASST 7 cut(s) 18, 28, 454, 484, 508, 535, 595
SfaNI GCATC 1 cut(s) 481
SfcI CTRYAG 1 cut(s) 33
Sfr274I CTCGAG 1 cut(s) 134
SgrAI CRCCGGYG 1 cut(s) 542
SlaI CTCGAG 1 cut(s) 134
SmaI CCCGGG 1 cut(s) 601
SmlI CTYRAG 2 cut(s) 54, 134
SmoI CTYRAG 2 cut(s) 54, 134
Sse9I AATT 8 cut(s) 18, 194, 294, 400, 427, 623, 688, 727
SseBI AGGCCT 1 cut(s) 52
SsiI CCGC 2 cut(s) 392, 584
SspMI CTAG 1 cut(s) 699
StuI AGGCCT 1 cut(s) 52
StyD4I CCNGG 5 cut(s) 460, 515, 568, 598, 599
StyI CCWWGG 1 cut(s) 168
TaqI TCGA 5 cut(s) 135, 186, 202, 249, 292
TasI AATT 8 cut(s) 18, 194, 294, 400, 427, 623, 688, 727
TfiI GAWTC 3 cut(s) 522, 549, 647
Tru1I TTAA 2 cut(s) 297, 512
Tru9I TTAA 2 cut(s) 297, 512
TseI GCWGC 2 cut(s) 68, 101
TspDTI ATGAA 2 cut(s) 207, 618
TspGWI ACGGA 1 cut(s) 100
TspMI CCCGGG 1 cut(s) 599
XapI RAATTY 2 cut(s) 194, 427
XbaI TCTAGA 1 cut(s) 698
XceI RCATGY 1 cut(s) 234
XhoI CTCGAG 1 cut(s) 134
XmaI CCCGGG 1 cut(s) 599
XspI CTAG 1 cut(s) 699
Zsp2I ATGCAT 1 cut(s) 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.