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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 194 |
| Acc36I | ACCTGC | 1 cut(s) | 194 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 155, 656, 782 |
| AciI | CCGC | 6 cut(s) | 617, 644, 716, 743, 770, 965 |
| AcsI | RAATTY | 4 cut(s) | 160, 374, 778, 805 |
| AcyI | GRCGYC | 1 cut(s) | 545 |
| AgsI | TTSAA | 3 cut(s) | 74, 458, 1061 |
| AjnI | CCWGG | 2 cut(s) | 154, 685 |
| Alw26I | GTCTC | 2 cut(s) | 317, 392 |
| Ama87I | CYCGRG | 2 cut(s) | 314, 980 |
| AoxI | GGCC | 1 cut(s) | 230 |
| ApeKI | GCWGC | 4 cut(s) | 248, 281, 613, 739 |
| ApoI | RAATTY | 4 cut(s) | 160, 374, 778, 805 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1060, 1092 |
| AspLEI | GCGC | 1 cut(s) | 818 |
| AsuC2I | CCSGG | 2 cut(s) | 981, 982 |
| AsuHPI | GGTGA | 4 cut(s) | 218, 910, 963, 1002 |
| AvaI | CYCGRG | 2 cut(s) | 314, 980 |
| BbvI | GCAGC | 4 cut(s) | 235, 293, 625, 751 |
| BccI | CCATC | 2 cut(s) | 863, 1040 |
| BciT130I | CCWGG | 2 cut(s) | 156, 687 |
| BciVI | GTATCC | 4 cut(s) | 425, 629, 755, 950 |
| BcnI | CCSGG | 2 cut(s) | 981, 982 |
| BcoDI | GTCTC | 2 cut(s) | 317, 392 |
| BfaI | CTAG | 3 cut(s) | 48, 93, 1079 |
| BfuAI | ACCTGC | 1 cut(s) | 194 |
| BfuI | GTATCC | 4 cut(s) | 425, 629, 755, 950 |
| BglII | AGATCT | 2 cut(s) | 601, 727 |
| BisI | GCNGC | 6 cut(s) | 249, 282, 614, 617, 740, 743 |
| BlsI | GCNGC | 6 cut(s) | 250, 283, 615, 618, 741, 744 |
| Bme1390I | CCNGG | 4 cut(s) | 156, 687, 981, 982 |
| BmeT110I | CYCGRG | 2 cut(s) | 314, 980 |
| BmiI | GGNNCC | 1 cut(s) | 18 |
| BmrFI | CCNGG | 4 cut(s) | 156, 687, 981, 982 |
| BmrI | ACTGGG | 1 cut(s) | 834 |
| BmuI | ACTGGG | 1 cut(s) | 834 |
| BpmI | CTGGAG | 1 cut(s) | 126 |
| BpuEI | CTTGAG | 1 cut(s) | 219 |
| BpuMI | CCSGG | 2 cut(s) | 981, 982 |
| BsaHI | GRCGYC | 1 cut(s) | 545 |
| BsaJI | CCNNGG | 5 cut(s) | 348, 685, 979, 980, 981 |
| Bse118I | RCCGGY | 1 cut(s) | 812 |
| Bse1I | ACTGG | 2 cut(s) | 840, 921 |
| BseBI | CCWGG | 2 cut(s) | 156, 687 |
| BseDI | CCNNGG | 5 cut(s) | 348, 685, 979, 980, 981 |
| BseGI | GGATG | 2 cut(s) | 190, 1079 |
| BseMII | CTCAG | 1 cut(s) | 179 |
| BseNI | ACTGG | 2 cut(s) | 840, 921 |
| BseXI | GCAGC | 4 cut(s) | 235, 293, 625, 751 |
| BshFI | GGCC | 1 cut(s) | 232 |
| BsiHKCI | CYCGRG | 2 cut(s) | 314, 980 |
| BsiSI | CCGG | 2 cut(s) | 813, 981 |
| BsmAI | GTCTC | 2 cut(s) | 317, 392 |
| BsmI | GAATGC | 1 cut(s) | 791 |
| BsnI | GGCC | 1 cut(s) | 232 |
| BsoBI | CYCGRG | 2 cut(s) | 314, 980 |
| Bsp143I | GATC | 5 cut(s) | 168, 289, 469, 601, 727 |
| BspACI | CCGC | 6 cut(s) | 617, 644, 716, 743, 770, 965 |
| BspANI | GGCC | 1 cut(s) | 232 |
| BspCNI | CTCAG | 1 cut(s) | 178 |
| BspHI | TCATGA | 1 cut(s) | 1047 |
| BspLI | GGNNCC | 1 cut(s) | 18 |
| BspMI | ACCTGC | 1 cut(s) | 194 |
| BspQI | GCTCTTC | 2 cut(s) | 483, 504 |
| BsrFI | RCCGGY | 1 cut(s) | 812 |
| BsrI | ACTGG | 2 cut(s) | 840, 921 |
| BssAI | RCCGGY | 1 cut(s) | 812 |
| BssECI | CCNNGG | 5 cut(s) | 348, 685, 979, 980, 981 |
| BssMI | GATC | 5 cut(s) | 168, 289, 469, 601, 727 |
| BssNI | GRCGYC | 1 cut(s) | 545 |
| BssT1I | CCWWGG | 1 cut(s) | 348 |
| Bst2UI | CCWGG | 2 cut(s) | 156, 687 |
| Bst4CI | ACNGT | 1 cut(s) | 311 |
| Bst6I | CTCTTC | 4 cut(s) | 393, 483, 504, 689 |
| BstACI | GRCGYC | 1 cut(s) | 545 |
| BstC8I | GCNNGC | 1 cut(s) | 814 |
| BstDEI | CTNAG | 1 cut(s) | 165 |
| BstF5I | GGATG | 2 cut(s) | 190, 1079 |
| BstHHI | GCGC | 1 cut(s) | 818 |
| BstKTI | GATC | 5 cut(s) | 171, 292, 472, 604, 730 |
| BstMAI | GTCTC | 2 cut(s) | 317, 392 |
| BstMBI | GATC | 5 cut(s) | 168, 289, 469, 601, 727 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 53, 257 |
| BstNI | CCWGG | 2 cut(s) | 156, 687 |
| BstNSI | RCATGY | 1 cut(s) | 414 |
| BstSCI | CCNGG | 4 cut(s) | 154, 685, 979, 980 |
| BstV1I | GCAGC | 4 cut(s) | 235, 293, 625, 751 |
| BstX2I | RGATCY | 2 cut(s) | 601, 727 |
| BstYI | RGATCY | 2 cut(s) | 601, 727 |
| BsuI | GTATCC | 4 cut(s) | 425, 629, 755, 950 |
| BsuRI | GGCC | 1 cut(s) | 232 |
| BtsCI | GGATG | 2 cut(s) | 190, 1079 |
| BtsIMutI | CAGTG | 2 cut(s) | 847, 928 |
| BveI | ACCTGC | 1 cut(s) | 194 |
| Cac8I | GCNNGC | 1 cut(s) | 814 |
| CciI | TCATGA | 1 cut(s) | 1047 |
| CfoI | GCGC | 1 cut(s) | 818 |
| Cfr10I | RCCGGY | 1 cut(s) | 812 |
| Cfr9I | CCCGGG | 1 cut(s) | 980 |
| CseI | GACGC | 1 cut(s) | 553 |
| CviAII | CATG | 3 cut(s) | 181, 411, 1048 |
| CviJI | RGCY | 5 cut(s) | 19, 232, 248, 616, 742 |
| CviKI_1 | RGCY | 5 cut(s) | 19, 232, 248, 616, 742 |
| DdeI | CTNAG | 1 cut(s) | 165 |
| DpnI | GATC | 5 cut(s) | 170, 291, 471, 603, 729 |
| DpnII | GATC | 5 cut(s) | 168, 289, 469, 601, 727 |
| DraI | TTTAAA | 1 cut(s) | 82 |
| Eam1104I | CTCTTC | 4 cut(s) | 393, 483, 504, 689 |
| EarI | CTCTTC | 4 cut(s) | 393, 483, 504, 689 |
| Eco130I | CCWWGG | 1 cut(s) | 348 |
| Eco147I | AGGCCT | 1 cut(s) | 232 |
| Eco32I | GATATC | 1 cut(s) | 989 |
| Eco88I | CYCGRG | 2 cut(s) | 314, 980 |
| EcoRI | GAATTC | 1 cut(s) | 374 |
| EcoRII | CCWGG | 2 cut(s) | 154, 685 |
| EcoRV | GATATC | 1 cut(s) | 989 |
| EcoT14I | CCWWGG | 1 cut(s) | 348 |
| ErhI | CCWWGG | 1 cut(s) | 348 |
| FaeI | CATG | 3 cut(s) | 184, 414, 1051 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 588, 620, 714, 746 |
| FatI | CATG | 3 cut(s) | 180, 410, 1047 |
| Fnu4HI | GCNGC | 6 cut(s) | 249, 282, 614, 617, 740, 743 |
| FokI | GGATG | 2 cut(s) | 197, 1086 |
| Fsp4HI | GCNGC | 6 cut(s) | 249, 282, 614, 617, 740, 743 |
| FspBI | CTAG | 3 cut(s) | 48, 93, 1079 |
| GlaI | GCGC | 1 cut(s) | 817 |
| GluI | GCNGC | 6 cut(s) | 249, 282, 614, 617, 740, 743 |
| GsuI | CTGGAG | 1 cut(s) | 126 |
| HaeIII | GGCC | 1 cut(s) | 232 |
| HapII | CCGG | 2 cut(s) | 813, 981 |
| HgaI | GACGC | 1 cut(s) | 553 |
| HhaI | GCGC | 1 cut(s) | 818 |
| Hin1I | GRCGYC | 1 cut(s) | 545 |
| Hin1II | CATG | 3 cut(s) | 184, 414, 1051 |
| Hin6I | GCGC | 1 cut(s) | 816 |
| HinP1I | GCGC | 1 cut(s) | 816 |
| HinfI | GANTC | 3 cut(s) | 873, 900, 927 |
| HpaII | CCGG | 2 cut(s) | 813, 981 |
| HphI | GGTGA | 4 cut(s) | 218, 910, 963, 1002 |
| Hpy188I | TCNGA | 2 cut(s) | 39, 168 |
| Hpy188III | TCNNGA | 9 cut(s) | 105, 314, 316, 458, 570, 605, 731, 1048, 1079 |
| HpyAV | CCTTC | 7 cut(s) | 116, 234, 238, 271, 633, 759, 925 |
| HpyCH4III | ACNGT | 1 cut(s) | 311 |
| HpyCH4V | TGCA | 6 cut(s) | 203, 215, 424, 665, 791, 845 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 53, 257 |
| HpyF3I | CTNAG | 1 cut(s) | 165 |
| Hsp92I | GRCGYC | 1 cut(s) | 545 |
| Hsp92II | CATG | 3 cut(s) | 184, 414, 1051 |
| HspAI | GCGC | 1 cut(s) | 816 |
| KroI | GCCGGC | 1 cut(s) | 812 |
| KroNI | GCCGGC | 1 cut(s) | 814 |
| Kzo9I | GATC | 5 cut(s) | 168, 289, 469, 601, 727 |
| LguI | GCTCTTC | 2 cut(s) | 483, 504 |
| LmnI | GCTCC | 1 cut(s) | 16 |
| Lsp1109I | GCAGC | 4 cut(s) | 235, 293, 625, 751 |
| MaeI | CTAG | 3 cut(s) | 48, 93, 1079 |
| MaeIII | GTNAC | 1 cut(s) | 50 |
| MalI | GATC | 5 cut(s) | 170, 291, 471, 603, 729 |
| MboI | GATC | 5 cut(s) | 168, 289, 469, 601, 727 |
| MboII | GAAGA | 9 cut(s) | 16, 410, 500, 521, 595, 611, 706, 737, 1096 |
| MflI | RGATCY | 2 cut(s) | 601, 727 |
| MroNI | GCCGGC | 1 cut(s) | 812 |
| MseI | TTAA | 3 cut(s) | 81, 477, 890 |
| MspI | CCGG | 2 cut(s) | 813, 981 |
| MspR9I | CCNGG | 4 cut(s) | 156, 687, 981, 982 |
| Mva1269I | GAATGC | 1 cut(s) | 791 |
| MvaI | CCWGG | 2 cut(s) | 156, 687 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 53, 257 |
| NaeI | GCCGGC | 1 cut(s) | 814 |
| NciI | CCSGG | 2 cut(s) | 981, 982 |
| NdeII | GATC | 5 cut(s) | 168, 289, 469, 601, 727 |
| NgoMIV | GCCGGC | 1 cut(s) | 812 |
| NlaIII | CATG | 3 cut(s) | 184, 414, 1051 |
| NlaIV | GGNNCC | 1 cut(s) | 18 |
| NspI | RCATGY | 1 cut(s) | 414 |
| PaeR7I | CTCGAG | 1 cut(s) | 314 |
| PagI | TCATGA | 1 cut(s) | 1047 |
| PaqCI | CACCTGC | 1 cut(s) | 194 |
| PceI | AGGCCT | 1 cut(s) | 232 |
| PciSI | GCTCTTC | 2 cut(s) | 483, 504 |
| PctI | GAATGC | 1 cut(s) | 791 |
| PdiI | GCCGGC | 1 cut(s) | 814 |
| PfeI | GAWTC | 3 cut(s) | 873, 900, 927 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 155, 656, 782 |
| PfoI | TCCNGGA | 1 cut(s) | 154 |
| PkrI | GCNGC | 6 cut(s) | 250, 283, 615, 618, 741, 744 |
| Psp6I | CCWGG | 2 cut(s) | 154, 685 |
| PspGI | CCWGG | 2 cut(s) | 154, 685 |
| PspN4I | GGNNCC | 1 cut(s) | 18 |
| PsuI | RGATCY | 2 cut(s) | 601, 727 |
| SapI | GCTCTTC | 2 cut(s) | 483, 504 |
| SaqAI | TTAA | 3 cut(s) | 81, 477, 890 |
| SatI | GCNGC | 6 cut(s) | 249, 282, 614, 617, 740, 743 |
| Sau3AI | GATC | 5 cut(s) | 168, 289, 469, 601, 727 |
| ScrFI | CCNGG | 4 cut(s) | 156, 687, 981, 982 |
| Sfr274I | CTCGAG | 1 cut(s) | 314 |
| SlaI | CTCGAG | 1 cut(s) | 314 |
| SmaI | CCCGGG | 1 cut(s) | 982 |
| SmlI | CTYRAG | 2 cut(s) | 234, 314 |
| SmoI | CTYRAG | 2 cut(s) | 234, 314 |
| SseBI | AGGCCT | 1 cut(s) | 232 |
| SsiI | CCGC | 6 cut(s) | 617, 644, 716, 743, 770, 965 |
| SspMI | CTAG | 3 cut(s) | 48, 93, 1079 |
| StuI | AGGCCT | 1 cut(s) | 232 |
| StyD4I | CCNGG | 4 cut(s) | 154, 685, 979, 980 |
| StyI | CCWWGG | 1 cut(s) | 348 |
| TaaI | ACNGT | 1 cut(s) | 311 |
| TaqI | TCGA | 5 cut(s) | 315, 366, 382, 429, 472 |
| TauI | GCSGC | 2 cut(s) | 619, 745 |
| TfiI | GAWTC | 3 cut(s) | 873, 900, 927 |
| Tru1I | TTAA | 3 cut(s) | 81, 477, 890 |
| Tru9I | TTAA | 3 cut(s) | 81, 477, 890 |
| TscAI | CASTG | 2 cut(s) | 847, 928 |
| TseI | GCWGC | 4 cut(s) | 248, 281, 613, 739 |
| TspDTI | ATGAA | 2 cut(s) | 17, 135 |
| TspGWI | ACGGA | 1 cut(s) | 280 |
| TspMI | CCCGGG | 1 cut(s) | 980 |
| TspRI | CASTG | 2 cut(s) | 847, 928 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 155, 656, 782 |
| XapI | RAATTY | 4 cut(s) | 160, 374, 778, 805 |
| XbaI | TCTAGA | 1 cut(s) | 1078 |
| XceI | RCATGY | 1 cut(s) | 414 |
| XhoI | CTCGAG | 1 cut(s) | 314 |
| XmaI | CCCGGG | 1 cut(s) | 980 |
| XspI | CTAG | 3 cut(s) | 48, 93, 1079 |